Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003699

Physical Location & Seq

Genomic Coordinates Reverse (-)

43636871 .. 43647039

Gene Structure 10169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCTGCACCGGATTTTCCTATGATCGGGATGATTCGAACGAGAGAAGAATGGGATGGTGATTCGGGCCCTTCGGTACCTGTGGATGAGAATGATATGGAGGTAGTAGTGGAGGATGGGACAATTGGGGAACCTACCCAAAAACGGAGAAGGTTGGAAGTGGGTAGCCGCATGGTGAGGACAACGGTGGAGGAAGGTTCCAAGGCGGCGAGGAGCTTACGGCGGCGGAGGGGCTTACGGAGGTTCCAATTTTGGATTACTCTTCTTTGGGGGATACAAGAAATTCCAAGTACAAAAACCGATTCTCAATTCAAGGAGAAAATTCGAAAAGTGGATGCGGTGCCCATTCCAAAGCCTCGGGTGATGGGCCCAACCCTATCCCAAAGCAAGTCAAGACCCAAAAAAGGTGGCGTGGACGTGGAAGGGGCGGGGCCCGGACGAACACTTCTACAGTGGGGAGTCGATTGGGGCCGACTCGTCTCCGTCTTTGCAGAGGCCTACGGAGAAGATTCTAGAATATTCCGGAAGTCCGCACCAAACACACGTGCCGGTTTGTCCCCTACCAAAGCCGAAAATCATTCACCACGTGACACAACTCGTGGCCTAAATCCGATCAAGATCAAGCTTCTACAGCAATTGGTCAATCATCTTCCTCAAATCGTCAACATAACAAGAAGTTCACACTACAACCGTTCGATTCAAGATCAAGTGCTTGCCACCCTTGGATCAAATCAACGTCGGAGATCGAATCGGGGAGATTCTTGTGAAAGAGCATCTACGCCTAATGGTGAGGCGACACGAGACGATCTTCAAGCGCATCACTTTGTTGTAGTGAGGTTGGATATCCACATTCACATCGTCCTCTTCAAGGATGAACAAAGAGCCAATGAAGCCTACACCCACGTCAACCAGGTAGCAGATCGTGGTCCTCATAATACTTTAGAAGACCAGTTTGTTGCTCTTGGTTTCGTTCGACGATCGGGGACTCGTCAAGATCCTGTTTATGTTGGACGTAGCACCTTACAGTTTCTTACAGAGATGTGCAACATGCCTCTGCCACCTCACTTGTGCCTTGCAGGCATGCTGTCGCCTCCAGGCGTGAGTGTGACGAAAGTTGAAGAGGTGGCACCGTTTTCTTTGAAGGAGGTCACTGACTTTGGAATCAGCTTCTACAACTATGTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

44.32

Weight (kDa)

9.59

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003699)

Species	Orthologous Gene IDs
malus_domestica	MD02G1274200.v1.1
pyrus_communis	pycom16g17950
rosa_chinensis	RchiOBHm_Chr6g0280461
rosa_laevigata	RLG00000001370 RLG00000009404 RLG00000030247
rosa_multiflora	Rmu_sc0001643.1_g000028
rosa_roxburghii	Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840
rosa_samantha	Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	3 cut(s)	76, 340, 1126
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	7 cut(s)	169, 206, 223, 226, 338, 428, 531
AclWI	GGATC	2 cut(s)	733, 989
AcsI	RAATTY	2 cut(s)	282, 321
AcvI	CACGTG	2 cut(s)	545, 587
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	78, 292
AfiI	CCNNNNNNNGG	4 cut(s)	26, 144, 404, 868
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	6 cut(s)	313, 701, 812, 868, 1118, 1141
AjiI	CACGTC	2 cut(s)	418, 904
AjnI	CCWGG	2 cut(s)	909, 1093
AluBI	AGCT	3 cut(s)	216, 625, 1167
AluI	AGCT	3 cut(s)	216, 625, 1167
Alw26I	GTCTC	2 cut(s)	484, 795
AlwI	GGATC	2 cut(s)	733, 989
Ama87I	CYCGRG	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	6 cut(s)	67, 367, 431, 469, 495, 601
ApaI	GGGCCC	3 cut(s)	71, 371, 435
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	282, 321
Asp718I	GGTACC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	817
AspS9I	GGNCC	8 cut(s)	67, 68, 367, 368, 431, 432, 469, 926
AsuC2I	CCSGG	1 cut(s)	435
AsuHPI	GGTGA	5 cut(s)	71, 187, 373, 573, 800
AsuII	TTCGAA	2 cut(s)	37, 325
AvaI	CYCGRG	1 cut(s)	357
AvaII	GGWCC	1 cut(s)	926
BaeGI	GKGCMC	4 cut(s)	71, 345, 371, 435
BanI	GGYRCC	3 cut(s)	76, 340, 1126
BanII	GRGCYC	3 cut(s)	71, 371, 435
BauI	CACGAG	2 cut(s)	597, 798
BbrPI	CACGTG	2 cut(s)	545, 587
BbsI	GAAGAC	1 cut(s)	951
BccI	CCATC	3 cut(s)	50, 110, 358
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	2 cut(s)	911, 1095
BciVI	GTATCC	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	484, 795
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	449, 629
BfuI	GTATCC	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	1077
BisI	GCNGC	4 cut(s)	6, 169, 207, 224
BlsI	GCNGC	4 cut(s)	7, 170, 208, 225
Bme1390I	CCNGG	3 cut(s)	435, 911, 1095
Bme18I	GGWCC	1 cut(s)	926
BmeT110I	CYCGRG	1 cut(s)	357
BmgBI	CACGTC	2 cut(s)	418, 904
BmgT120I	GGNCC	8 cut(s)	67, 68, 367, 368, 431, 432, 469, 926
BmrFI	CCNGG	3 cut(s)	435, 911, 1095
BmsI	GCATC	3 cut(s)	325, 782, 826
BpiI	GAAGAC	1 cut(s)	951
BpmI	CTGGAG	1 cut(s)	1077
Bpu14I	TTCGAA	2 cut(s)	37, 325
BpuMI	CCSGG	1 cut(s)	435
BsaAI	YACGTR	2 cut(s)	545, 587
BsaBI	GATNNNNATC	1 cut(s)	617
BsaJI	CCNNGG	3 cut(s)	201, 356, 721
BsaWI	WCCGGW	2 cut(s)	10, 522
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 144, 404, 868
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	1 cut(s)	949
Bse8I	GATNNNNATC	1 cut(s)	617
BseAI	TCCGGA	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	911, 1095
BseDI	CCNNGG	3 cut(s)	201, 356, 721
BseGI	GGATG	6 cut(s)	36, 61, 91, 121, 340, 877
BseJI	GATNNNNATC	1 cut(s)	617
BseLI	CCNNNNNNNGG	4 cut(s)	26, 144, 404, 868
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	1 cut(s)	226
BseSI	GKGCMC	4 cut(s)	71, 345, 371, 435
Bsh1285I	CGRYCG	1 cut(s)	980
BshFI	GGCC	6 cut(s)	69, 369, 433, 471, 497, 603
BshNI	GGYRCC	3 cut(s)	76, 340, 1126
BsiEI	CGRYCG	1 cut(s)	980
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	11, 435, 523, 549
BslFI	GGGAC	3 cut(s)	133, 541, 997
BslI	CCNNNNNNNGG	4 cut(s)	26, 144, 404, 868
BsmAI	GTCTC	2 cut(s)	484, 795
BsmBI	CGTCTC	2 cut(s)	484, 795
BsmFI	GGGAC	3 cut(s)	133, 541, 997
BsnI	GGCC	6 cut(s)	69, 369, 433, 471, 497, 603
BsoBI	CYCGRG	1 cut(s)	357
Bsp119I	TTCGAA	2 cut(s)	37, 325
Bsp120I	GGGCCC	3 cut(s)	67, 367, 431
Bsp1286I	GDGCHC	4 cut(s)	71, 345, 371, 435
Bsp13I	TCCGGA	1 cut(s)	522
BspACI	CCGC	7 cut(s)	169, 206, 223, 226, 338, 428, 531
BspANI	GGCC	6 cut(s)	69, 369, 433, 471, 497, 603
BspEI	TCCGGA	1 cut(s)	522
BspPI	GGATC	2 cut(s)	733, 989
BspT104I	TTCGAA	2 cut(s)	37, 325
BspT107I	GGYRCC	3 cut(s)	76, 340, 1126
BsrFI	RCCGGY	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	949
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	3 cut(s)	201, 356, 721
BssSI	CACGAG	2 cut(s)	597, 798
BssT1I	CCWWGG	2 cut(s)	201, 721
Bst2BI	CACGAG	2 cut(s)	597, 798
Bst2UI	CCWGG	2 cut(s)	911, 1095
Bst4CI	ACNGT	5 cut(s)	187, 453, 692, 1026, 1131
Bst6I	CTCTTC	3 cut(s)	267, 869, 1113
BstBAI	YACGTR	2 cut(s)	545, 587
BstBI	TTCGAA	2 cut(s)	37, 325
BstC8I	GCNNGC	3 cut(s)	714, 1078, 1082
BstDEI	CTNAG	1 cut(s)	1185
BstENI	CCTNNNNNAGG	1 cut(s)	866
BstF5I	GGATG	6 cut(s)	36, 61, 91, 121, 340, 877
BstHHI	GCGC	1 cut(s)	817
BstMAI	GTCTC	2 cut(s)	484, 795
BstMCI	CGRYCG	1 cut(s)	980
BstMWI	GCNNNNNNNGC	3 cut(s)	631, 890, 1077
BstNI	CCWGG	2 cut(s)	911, 1095
BstNSI	RCATGY	2 cut(s)	1051, 1084
BstSCI	CCNGG	3 cut(s)	433, 909, 1093
BstSFI	CTRYAG	2 cut(s)	449, 629
BstSLI	GKGCMC	4 cut(s)	71, 345, 371, 435
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	1 cut(s)	994
BstYI	RGATCY	1 cut(s)	994
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	6 cut(s)	69, 369, 433, 471, 497, 603
BtrI	CACGTC	2 cut(s)	418, 904
BtsCI	GGATG	6 cut(s)	36, 61, 91, 121, 340, 877
BtsIMutI	CAGTG	2 cut(s)	458, 1149
Cac8I	GCNNGC	3 cut(s)	714, 1078, 1082
CfoI	GCGC	1 cut(s)	817
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	8 cut(s)	67, 68, 367, 368, 431, 432, 469, 926
CsiI	ACCWGGT	1 cut(s)	909
Csp6I	GTAC	2 cut(s)	77, 291
CspCI	CAANNNNNGTGG	4 cut(s)	388, 423, 1047, 1082
CviAII	CATG	3 cut(s)	172, 1048, 1081
CviQI	GTAC	2 cut(s)	77, 291
DdeI	CTNAG	1 cut(s)	1185
DraIII	CACNNNGTG	1 cut(s)	587
Eam1104I	CTCTTC	3 cut(s)	267, 869, 1113
EarI	CTCTTC	3 cut(s)	267, 869, 1113
EciI	GGCGGA	1 cut(s)	241
Eco130I	CCWWGG	2 cut(s)	201, 721
Eco147I	AGGCCT	1 cut(s)	497
Eco24I	GRGCYC	3 cut(s)	71, 371, 435
Eco32I	GATATC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	926
Eco72I	CACGTG	2 cut(s)	545, 587
Eco88I	CYCGRG	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	866
EcoO109I	RGGNCCY	2 cut(s)	68, 431
EcoRII	CCWGG	2 cut(s)	909, 1093
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	2 cut(s)	201, 721
EcoT38I	GRGCYC	3 cut(s)	71, 371, 435
ErhI	CCWWGG	2 cut(s)	201, 721
Esp3I	CGTCTC	2 cut(s)	484, 795
FaeI	CATG	3 cut(s)	175, 1051, 1084
FaiI	YATR	9 cut(s)	23, 98, 173, 668, 933, 1005, 1049, 1082, 1179
FaqI	GGGAC	3 cut(s)	133, 541, 997
FatI	CATG	3 cut(s)	171, 1047, 1080
FauI	CCCGC	1 cut(s)	421
Fnu4HI	GCNGC	4 cut(s)	6, 169, 207, 224
FokI	GGATG	6 cut(s)	43, 68, 98, 128, 347, 884
FriOI	GRGCYC	3 cut(s)	71, 371, 435
Fsp4HI	GCNGC	4 cut(s)	6, 169, 207, 224
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	4 cut(s)	6, 169, 207, 224
GsuI	CTGGAG	1 cut(s)	1077
HaeIII	GGCC	6 cut(s)	69, 369, 433, 471, 497, 603
HapII	CCGG	4 cut(s)	11, 435, 523, 549
HhaI	GCGC	1 cut(s)	817
Hin1II	CATG	3 cut(s)	175, 1051, 1084
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HincII	GTYRAC	2 cut(s)	664, 907
HindII	GTYRAC	2 cut(s)	664, 907
HindIII	AAGCTT	1 cut(s)	623
HpaII	CCGG	4 cut(s)	11, 435, 523, 549
HphI	GGTGA	5 cut(s)	71, 187, 373, 573, 800
Hpy166II	GTNNAC	4 cut(s)	415, 664, 680, 907
Hpy188I	TCNGA	2 cut(s)	612, 741
Hpy188III	TCNNGA	7 cut(s)	28, 393, 513, 523, 616, 701, 992
Hpy8I	GTNNAC	4 cut(s)	415, 664, 680, 907
Hpy99I	CGWCG	2 cut(s)	741, 978
HpyAV	CCTTC	5 cut(s)	81, 144, 188, 416, 1135
HpyCH4III	ACNGT	5 cut(s)	187, 453, 692, 1026, 1131
HpyCH4IV	ACGT	6 cut(s)	417, 544, 586, 736, 903, 1012
HpyCH4V	TGCA	4 cut(s)	8, 491, 1044, 1076
HpyF10VI	GCNNNNNNNGC	3 cut(s)	631, 890, 1077
HpyF3I	CTNAG	1 cut(s)	1185
HpySE526I	ACGT	6 cut(s)	417, 544, 586, 736, 903, 1012
Hsp92II	CATG	3 cut(s)	175, 1051, 1084
HspAI	GCGC	1 cut(s)	815
Kpn2I	TCCGGA	1 cut(s)	522
KpnI	GGTACC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	213
LweI	GCATC	3 cut(s)	325, 782, 826
MabI	ACCWGGT	1 cut(s)	909
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	6 cut(s)	417, 544, 586, 736, 903, 1012
MaeIII	GTNAC	3 cut(s)	587, 1105, 1147
MboII	GAAGA	8 cut(s)	59, 254, 518, 641, 800, 856, 956, 1130
MfeI	CAATTG	2 cut(s)	123, 635
MflI	RGATCY	1 cut(s)	994
MhlI	GDGCHC	4 cut(s)	71, 345, 371, 435
MluCI	AATT	6 cut(s)	123, 248, 282, 308, 321, 635
MlyI	GAGTC	3 cut(s)	468, 468, 979
MmeI	TCCRAC	4 cut(s)	135, 719, 819, 988
MroI	TCCGGA	1 cut(s)	522
MspI	CCGG	4 cut(s)	11, 435, 523, 549
MspR9I	CCNGG	3 cut(s)	435, 911, 1095
MunI	CAATTG	2 cut(s)	123, 635
MvaI	CCWGG	2 cut(s)	911, 1095
MwoI	GCNNNNNNNGC	3 cut(s)	631, 890, 1077
NciI	CCSGG	1 cut(s)	435
NlaIII	CATG	3 cut(s)	175, 1051, 1084
NmuCI	GTSAC	3 cut(s)	587, 1105, 1147
NspI	RCATGY	2 cut(s)	1051, 1084
NspV	TTCGAA	2 cut(s)	37, 325
PaeI	GCATGC	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	497
PfeI	GAWTC	8 cut(s)	34, 62, 302, 509, 697, 748, 758, 1161
PkrI	GCNGC	4 cut(s)	7, 170, 208, 225
Ple19I	CGATCG	1 cut(s)	980
PleI	GAGTC	3 cut(s)	467, 468, 979
PmaCI	CACGTG	2 cut(s)	545, 587
PmlI	CACGTG	2 cut(s)	545, 587
PpsI	GAGTC	3 cut(s)	467, 468, 979
Ppu21I	YACGTR	2 cut(s)	545, 587
Psp6I	CCWGG	2 cut(s)	909, 1093
PspCI	CACGTG	2 cut(s)	545, 587
PspGI	CCWGG	2 cut(s)	909, 1093
PspOMI	GGGCCC	3 cut(s)	67, 367, 431
PspPI	GGNCC	8 cut(s)	67, 68, 367, 368, 431, 432, 469, 926
PsuI	RGATCY	1 cut(s)	994
PvuI	CGATCG	1 cut(s)	980
RsaI	GTAC	2 cut(s)	78, 292
RsaNI	GTAC	2 cut(s)	77, 291
SatI	GCNGC	4 cut(s)	6, 169, 207, 224
Sau96I	GGNCC	8 cut(s)	67, 68, 367, 368, 431, 432, 469, 926
SchI	GAGTC	3 cut(s)	468, 468, 979
ScrFI	CCNGG	3 cut(s)	435, 911, 1095
SduI	GDGCHC	4 cut(s)	71, 345, 371, 435
SexAI	ACCWGGT	1 cut(s)	909
SfaNI	GCATC	3 cut(s)	325, 782, 826
SfcI	CTRYAG	2 cut(s)	449, 629
SfuI	TTCGAA	2 cut(s)	37, 325
SinI	GGWCC	1 cut(s)	926
SphI	GCATGC	1 cut(s)	1084
Sse9I	AATT	6 cut(s)	123, 248, 282, 308, 321, 635
SseBI	AGGCCT	1 cut(s)	497
SsiI	CCGC	7 cut(s)	169, 206, 223, 226, 338, 428, 531
SspI	AATATT	1 cut(s)	519
SspMI	CTAG	1 cut(s)	513
StuI	AGGCCT	1 cut(s)	497
StyD4I	CCNGG	3 cut(s)	433, 909, 1093
StyI	CCWWGG	2 cut(s)	201, 721
TaaI	ACNGT	5 cut(s)	187, 453, 692, 1026, 1131
TaiI	ACGT	6 cut(s)	420, 547, 589, 739, 906, 1015
TaqI	TCGA	6 cut(s)	37, 325, 462, 695, 746, 973
TasI	AATT	6 cut(s)	123, 248, 282, 308, 321, 635
TatI	WGTACW	1 cut(s)	290
TauI	GCSGC	3 cut(s)	171, 209, 226
TfiI	GAWTC	8 cut(s)	34, 62, 302, 509, 697, 748, 758, 1161
TscAI	CASTG	2 cut(s)	458, 1156
TseFI	GTSAC	3 cut(s)	587, 1105, 1147
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	3 cut(s)	587, 1105, 1147
TspDTI	ATGAA	2 cut(s)	888, 903
TspGWI	ACGGA	4 cut(s)	160, 253, 472, 516
TspRI	CASTG	2 cut(s)	458, 1156
VpaK11BI	GGWCC	1 cut(s)	926
XagI	CCTNNNNNAGG	1 cut(s)	866
XapI	RAATTY	2 cut(s)	282, 321
XbaI	TCTAGA	1 cut(s)	512
XceI	RCATGY	2 cut(s)	1051, 1084
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.