Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003699

Physical Location & Seq

Genomic Coordinates Reverse (-)

75108820 .. 75122809

Gene Structure 13990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG437300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGAGAGCGAAAAGGCCTATGATAAGTTTAAGATTACAACAGCCTTGAAGATACAGTTTCTTAATGAAGAAGTTGCTGAGAATTCTTTCCCATGCAAGCTACAAGTGGGACGCATTGATGGAAACAATCCACAAAATAGTAGAGAGGAAGCAGCATTTAACCGGACAGATATGTATGGAAAGGACTCTAATTCGTCTTCTGGATTAGGTAAAATCAGTGAGATGAGCAACAACACGGAGAGTTCAAATCCGAGCCTCCTGACCTTGACTAACAGCAGCAGAGTGACGGCGGTGCCGAGGCAACCACAAGACTTCCGCTTCTCATCGCCGCTCGCCGCTCGCCGTCGACTTGCCACGACGTCATTTCTGCTTCGTGTCTCATTATCGGTGTTTCTCAGCGTTGTCAGTGATAGCCGGAAGGAAGAAGAAGGGAGAGTGGGGGTTTTGGCTTTATGGGACTTGTACGAAGGTGTTGGTGATCGCACCTTGAGTGGTTGTTACATTGGCATATTGAGTGAAGAGGCCTTCAAGGGGCTAGGGGACTTTTCAAAGGAGGAGCTGGACTCGGAGTCAGAGAGTGAGGTGGTTGAGCCGGCTAATGAAGATTTGAAATTATGCTTCAAGGCTTTCCAAAGAGCAAAACATGAGCATGAGGCATTAAAGAGGCAGCTTGAAACTTATTTCCAGTTGAGAAGACAAGCTGGAATGTGGATGAGAGTGAAATGGCAGATATGTCCTAGAGGGCTCAGAGCTTATCGAGAGGAAAGTAGACTTAAAAAGCTTGAAGATTTCATAGAAGTTGAATTCAGGAAGTTTTCCATGAATATATACTACATTACTACACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

282

Amino Acids

32.34

Weight (kDa)

6.79

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003699)

Species	Orthologous Gene IDs
malus_domestica	MD02G1274200.v1.1
pyrus_communis	pycom16g17950
rosa_chinensis	RchiOBHm_Chr6g0280461
rosa_laevigata	RLG00000001370 RLG00000009404 RLG00000030247
rosa_multiflora	Rmu_sc0001643.1_g000028
rosa_roxburghii	Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840
rosa_samantha	Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	292
AccBSI	CCGCTC	2 cut(s)	331, 338
AccI	GTMKAC	2 cut(s)	346, 769
AciI	CCGC	4 cut(s)	290, 316, 329, 336
AcsI	RAATTY	2 cut(s)	82, 803
AcyI	GRCGYC	1 cut(s)	359
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	531
AflIII	ACRYGT	1 cut(s)	842
AgsI	TTSAA	9 cut(s)	49, 246, 529, 549, 610, 622, 674, 785, 803
AhdI	GACNNNNNGTC	1 cut(s)	568
AluBI	AGCT	6 cut(s)	100, 559, 670, 701, 752, 781
AluI	AGCT	6 cut(s)	100, 559, 670, 701, 752, 781
Alw26I	GTCTC	1 cut(s)	382
AoxI	GGCC	2 cut(s)	15, 522
ApeKI	GCWGC	3 cut(s)	152, 276, 667
ApoI	RAATTY	2 cut(s)	82, 803
Asp700I	GAANNNNTTC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	189, 700
BbvI	GCAGC	3 cut(s)	164, 288, 679
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	2 cut(s)	303, 327
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	536, 738
BisI	GCNGC	5 cut(s)	153, 277, 329, 336, 668
BlsI	GCNGC	5 cut(s)	154, 278, 330, 337, 669
BmeRI	GACNNNNNGTC	1 cut(s)	568
BmiI	GGNNCC	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	189, 700
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpuEI	CTTGAG	1 cut(s)	508
BsaHI	GRCGYC	1 cut(s)	359
BsaJI	CCNNGG	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse118I	RCCGGY	1 cut(s)	592
Bse1I	ACTGG	1 cut(s)	685
BseDI	CCNNGG	1 cut(s)	296
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	69, 409, 760
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	3 cut(s)	164, 288, 679
BshFI	GGCC	2 cut(s)	17, 524
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	163, 415, 593
BslFI	GGGAC	3 cut(s)	123, 470, 554
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	382
BsmFI	GGGAC	3 cut(s)	123, 470, 554
BsnI	GGCC	2 cut(s)	17, 524
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	4 cut(s)	290, 316, 329, 336
BspANI	GGCC	2 cut(s)	17, 524
BspCNI	CTCAG	3 cut(s)	70, 408, 759
BspLI	GGNNCC	1 cut(s)	294
BspT107I	GGYRCC	1 cut(s)	292
BsrBI	CCGCTC	2 cut(s)	331, 338
BsrFI	RCCGGY	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	685
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	296
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	1 cut(s)	359
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	513
BstACI	GRCGYC	1 cut(s)	359
BstC8I	GCNNGC	4 cut(s)	98, 333, 340, 594
BstDEI	CTNAG	3 cut(s)	78, 395, 746
BstF5I	GGATG	1 cut(s)	717
BstKTI	GATC	1 cut(s)	481
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	478
BstV1I	GCAGC	3 cut(s)	164, 288, 679
BstV2I	GAAGAC	2 cut(s)	189, 700
BsuRI	GGCC	2 cut(s)	17, 524
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	223, 412
Cac8I	GCNNGC	4 cut(s)	98, 333, 340, 594
Cfr10I	RCCGGY	1 cut(s)	592
CseI	GACGC	1 cut(s)	120
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	4 cut(s)	93, 644, 650, 820
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	78, 395, 746
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DriI	GACNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	513
Eam1105I	GACNNNNNGTC	1 cut(s)	568
EarI	CTCTTC	1 cut(s)	513
Eco147I	AGGCCT	2 cut(s)	17, 524
Eco24I	GRGCYC	1 cut(s)	747
EcoRI	GAATTC	2 cut(s)	82, 803
EcoT38I	GRGCYC	1 cut(s)	747
FaeI	CATG	4 cut(s)	96, 647, 653, 823
FaqI	GGGAC	3 cut(s)	123, 470, 554
FatI	CATG	4 cut(s)	92, 643, 649, 819
FblI	GTMKAC	2 cut(s)	346, 769
Fnu4HI	GCNGC	5 cut(s)	153, 277, 329, 336, 668
FokI	GGATG	1 cut(s)	724
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	5 cut(s)	153, 277, 329, 336, 668
FspBI	CTAG	2 cut(s)	536, 738
GluI	GCNGC	5 cut(s)	153, 277, 329, 336, 668
HaeIII	GGCC	2 cut(s)	17, 524
HapII	CCGG	3 cut(s)	163, 415, 593
HgaI	GACGC	1 cut(s)	120
Hin1I	GRCGYC	1 cut(s)	359
Hin1II	CATG	4 cut(s)	96, 647, 653, 823
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	779
HinfI	GANTC	3 cut(s)	185, 563, 569
HpaII	CCGG	3 cut(s)	163, 415, 593
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	347, 770
Hpy188I	TCNGA	4 cut(s)	252, 568, 574, 749
Hpy188III	TCNNGA	4 cut(s)	201, 259, 758, 808
Hpy8I	GTNNAC	2 cut(s)	347, 770
Hpy99I	CGWCG	2 cut(s)	348, 361
HpyAV	CCTTC	4 cut(s)	412, 422, 461, 535
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	359, 844
HpyCH4V	TGCA	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	78, 395, 746
HpySE526I	ACGT	2 cut(s)	359, 844
Hsp92I	GRCGYC	1 cut(s)	359
Hsp92II	CATG	4 cut(s)	96, 647, 653, 823
KroI	GCCGGC	1 cut(s)	592
KroNI	GCCGGC	1 cut(s)	594
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	9 cut(s)	176, 186, 272, 428, 545, 606, 687, 698, 793
Lsp1109I	GCAGC	3 cut(s)	164, 288, 679
MaeI	CTAG	2 cut(s)	536, 738
MaeII	ACGT	2 cut(s)	359, 844
MaeIII	GTNAC	2 cut(s)	283, 497
MalI	GATC	1 cut(s)	480
MbiI	CCGCTC	2 cut(s)	331, 338
MboI	GATC	1 cut(s)	478
MboII	GAAGA	9 cut(s)	61, 80, 189, 434, 437, 530, 614, 705, 797
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	4 cut(s)	82, 190, 611, 803
MlyI	GAGTC	3 cut(s)	179, 557, 578
MroNI	GCCGGC	1 cut(s)	592
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	5 cut(s)	30, 63, 159, 659, 774
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	3 cut(s)	163, 415, 593
NaeI	GCCGGC	1 cut(s)	594
NdeII	GATC	1 cut(s)	478
NgoMIV	GCCGGC	1 cut(s)	592
NlaIII	CATG	4 cut(s)	96, 647, 653, 823
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	283
PceI	AGGCCT	2 cut(s)	17, 524
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	5 cut(s)	154, 278, 330, 337, 669
PleI	GAGTC	3 cut(s)	179, 557, 577
PpsI	GAGTC	3 cut(s)	179, 557, 577
PspN4I	GGNNCC	1 cut(s)	294
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	648
SalI	GTCGAC	1 cut(s)	345
SaqAI	TTAA	5 cut(s)	30, 63, 159, 659, 774
SatI	GCNGC	5 cut(s)	153, 277, 329, 336, 668
Sau3AI	GATC	1 cut(s)	478
SchI	GAGTC	3 cut(s)	179, 557, 578
SduI	GDGCHC	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	4 cut(s)	82, 190, 611, 803
SseBI	AGGCCT	2 cut(s)	17, 524
SsiI	CCGC	4 cut(s)	290, 316, 329, 336
SspMI	CTAG	2 cut(s)	536, 738
StuI	AGGCCT	2 cut(s)	17, 524
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	362, 847
TaqI	TCGA	2 cut(s)	346, 757
TasI	AATT	4 cut(s)	82, 190, 611, 803
TauI	GCSGC	2 cut(s)	331, 338
Tru1I	TTAA	5 cut(s)	30, 63, 159, 659, 774
Tru9I	TTAA	5 cut(s)	30, 63, 159, 659, 774
TscAI	CASTG	2 cut(s)	223, 412
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	3 cut(s)	152, 276, 667
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	81, 615, 781, 836
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	223, 412
XapI	RAATTY	2 cut(s)	82, 803
XmiI	GTMKAC	2 cut(s)	346, 769
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	536, 738
ZraI	GACGTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.