No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1274200.v1.1 |
| pyrus_communis | pycom16g17950 |
| rosa_chinensis | RchiOBHm_Chr6g0280461 |
| rosa_laevigata | RLG00000001370 RLG00000009404 RLG00000030247 |
| rosa_multiflora | Rmu_sc0001643.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840 |
| rosa_samantha | Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 287 |
| AciI | CCGC | 1 cut(s) | 70 |
| AclWI | GGATC | 1 cut(s) | 239 |
| AcsI | RAATTY | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 69 |
| AgsI | TTSAA | 2 cut(s) | 241, 273 |
| AluBI | AGCT | 4 cut(s) | 110, 161, 279, 395 |
| AluI | AGCT | 4 cut(s) | 110, 161, 279, 395 |
| AlwI | GGATC | 1 cut(s) | 239 |
| ApeKI | GCWGC | 3 cut(s) | 107, 110, 392 |
| ApoI | RAATTY | 1 cut(s) | 290 |
| BbvI | GCAGC | 2 cut(s) | 97, 119 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BisI | GCNGC | 3 cut(s) | 108, 111, 393 |
| BlsI | GCNGC | 3 cut(s) | 109, 112, 394 |
| BmrI | ACTGGG | 1 cut(s) | 58 |
| BmuI | ACTGGG | 1 cut(s) | 58 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 69 |
| Bse1I | ACTGG | 1 cut(s) | 64 |
| BseGI | GGATG | 4 cut(s) | 57, 59, 310, 382 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BseNI | ACTGG | 1 cut(s) | 64 |
| BseXI | GCAGC | 2 cut(s) | 97, 119 |
| BsgI | GTGCAG | 2 cut(s) | 126, 319 |
| BslFI | GGGAC | 1 cut(s) | 54 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 69 |
| BsmFI | GGGAC | 1 cut(s) | 54 |
| Bsp143I | GATC | 1 cut(s) | 244 |
| BspACI | CCGC | 1 cut(s) | 70 |
| BspMAI | CTGCAG | 1 cut(s) | 181 |
| BspPI | GGATC | 1 cut(s) | 239 |
| BsrI | ACTGG | 1 cut(s) | 64 |
| BssMI | GATC | 1 cut(s) | 244 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| BstF5I | GGATG | 4 cut(s) | 57, 59, 310, 382 |
| BstKTI | GATC | 1 cut(s) | 247 |
| BstMBI | GATC | 1 cut(s) | 244 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 2 cut(s) | 97, 119 |
| BstX2I | RGATCY | 1 cut(s) | 244 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 255 |
| BstYI | RGATCY | 1 cut(s) | 244 |
| BtsCI | GGATG | 4 cut(s) | 57, 59, 310, 382 |
| BtsI | GCAGTG | 1 cut(s) | 186 |
| BtsIMutI | CAGTG | 3 cut(s) | 71, 186, 378 |
| CviJI | RGCY | 5 cut(s) | 110, 161, 263, 279, 395 |
| CviKI_1 | RGCY | 5 cut(s) | 110, 161, 263, 279, 395 |
| DpnI | GATC | 1 cut(s) | 246 |
| DpnII | GATC | 1 cut(s) | 244 |
| EciI | GGCGGA | 1 cut(s) | 85 |
| FaiI | YATR | 6 cut(s) | 82, 234, 287, 335, 341, 356 |
| FaqI | GGGAC | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 3 cut(s) | 108, 111, 393 |
| FokI | GGATG | 4 cut(s) | 46, 64, 297, 389 |
| Fsp4HI | GCNGC | 3 cut(s) | 108, 111, 393 |
| GluI | GCNGC | 3 cut(s) | 108, 111, 393 |
| HinfI | GANTC | 2 cut(s) | 85, 269 |
| Hpy188I | TCNGA | 1 cut(s) | 90 |
| Hpy188III | TCNNGA | 2 cut(s) | 124, 248 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4V | TGCA | 5 cut(s) | 107, 179, 224, 300, 346 |
| Kzo9I | GATC | 1 cut(s) | 244 |
| LpnPI | CCDG | 3 cut(s) | 77, 261, 352 |
| Lsp1109I | GCAGC | 2 cut(s) | 97, 119 |
| MalI | GATC | 1 cut(s) | 246 |
| MboI | GATC | 1 cut(s) | 244 |
| MflI | RGATCY | 1 cut(s) | 244 |
| MluCI | AATT | 5 cut(s) | 229, 273, 282, 290, 316 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MnlI | CCTC | 1 cut(s) | 177 |
| MseI | TTAA | 1 cut(s) | 227 |
| MslI | CAYNNNNRTG | 1 cut(s) | 64 |
| MspA1I | CMGCKG | 2 cut(s) | 110, 395 |
| NdeII | GATC | 1 cut(s) | 244 |
| PfeI | GAWTC | 1 cut(s) | 269 |
| PkrI | GCNGC | 3 cut(s) | 109, 112, 394 |
| PleI | GAGTC | 1 cut(s) | 93 |
| PpsI | GAGTC | 1 cut(s) | 93 |
| PsiI | TTATAA | 1 cut(s) | 287 |
| PstI | CTGCAG | 1 cut(s) | 181 |
| PsuI | RGATCY | 1 cut(s) | 244 |
| PvuII | CAGCTG | 2 cut(s) | 110, 395 |
| RseI | CAYNNNNRTG | 1 cut(s) | 64 |
| SaqAI | TTAA | 1 cut(s) | 227 |
| SatI | GCNGC | 3 cut(s) | 108, 111, 393 |
| Sau3AI | GATC | 1 cut(s) | 244 |
| SchI | GAGTC | 1 cut(s) | 94 |
| SetI | ASST | 6 cut(s) | 112, 163, 169, 222, 281, 397 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 64 |
| Sse9I | AATT | 5 cut(s) | 229, 273, 282, 290, 316 |
| SsiI | CCGC | 1 cut(s) | 70 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TaqI | TCGA | 1 cut(s) | 216 |
| TasI | AATT | 5 cut(s) | 229, 273, 282, 290, 316 |
| TfiI | GAWTC | 1 cut(s) | 269 |
| Tru1I | TTAA | 1 cut(s) | 227 |
| Tru9I | TTAA | 1 cut(s) | 227 |
| TscAI | CASTG | 3 cut(s) | 71, 186, 378 |
| TseI | GCWGC | 3 cut(s) | 107, 110, 392 |
| TspDTI | ATGAA | 2 cut(s) | 68, 393 |
| TspRI | CASTG | 3 cut(s) | 71, 186, 378 |
| XapI | RAATTY | 1 cut(s) | 290 |