Rroxscaffold_3G00265210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003699
Physical Location & Seq
Forward (+)
58629945 .. 58645209
15265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00265210.1

Sequence Viewer

Length: 663 bp
ATGATCTACGGGTTCTTCATCAAGCTCGTGGAGAATCAACAAGCACCAAACACATGTGATGGTTCATCCCCTACCAAAGCCGAAGAACACTCGTCACGTGACACCACTCGTGGCCTAAATCCGATCAACATCAAGCTTCTACAGCCCTTGGTCAATCGTCTTCCTCAAATCGTCAACATAGCAAGAAGCGCACACTACAATCGTTCGATTCAAGATCAAGTGCTCGCCACCCTTGGATCAAAACAACGTCGAGAGATCGAATCGAGAGGAGAATTTTGTGAAAGAGCATCTACGAGAGATTCAAAGAAAAGGATTGAAACGAGAGAAAGGAGATCCAAGTTTCAATCCAAAATGAGAGAGAAGAGAAACCCTAGAAAAAGAGAGAAAAGTTTCACGTACCTACGTCGAGCTGCTGTGAAAAAAGAATATTGTGAAAATCTTTGGTGGAGACGTTGGATTTGTTTGGAGCTTTGGTATTTATACCTGAGCCTTTACAATTGTTACGTCCCGAACCTAGAATTAACGATTTACCAATTTTTACTTTTTATTGATGTTTTAGTGGCCCTAAAAGTTGACTTTTTGTTCGGGTCAAAATTTGAGGAAATGTTCTTCATGAAAGTTGTAGGGGACGTTAAACCGAGCGCGTGCATGTGTGGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

220

Amino Acids

26.03

Weight (kDa)

9.66

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 644
AclWI GGATC 2 cut(s) 244, 327
AcsI RAATTY 2 cut(s) 272, 593
AcvI CACGTG 1 cut(s) 98
AfaI GTAC 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 4 cut(s) 212, 303, 317, 344
AluBI AGCT 4 cut(s) 25, 136, 410, 469
AluI AGCT 4 cut(s) 25, 136, 410, 469
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 2 cut(s) 244, 327
AoxI GGCC 2 cut(s) 112, 561
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 272, 593
ArsI GACNNNNNNTTYG 4 cut(s) 441, 473, 566, 598
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 2 cut(s) 191, 644
AspS9I GGNCC 1 cut(s) 562
BauI CACGAG 2 cut(s) 26, 108
BbrPI CACGTG 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 2 cut(s) 372, 515
BfmI CTRYAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 411
BlsI GCNGC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 562
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 152
Bpu10I CCTNAGC 1 cut(s) 485
BsaAI YACGTR 2 cut(s) 98, 396
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 147, 232
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 147, 232
BseGI GGATG 1 cut(s) 65
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 2 cut(s) 114, 563
BsiHKAI GWGCWC 1 cut(s) 225
BslFI GGGAC 2 cut(s) 491, 641
BsmAI GTCTC 1 cut(s) 442
BsmBI CGTCTC 1 cut(s) 442
BsmFI GGGAC 2 cut(s) 491, 641
BsnI GGCC 2 cut(s) 114, 563
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 6 cut(s) 3, 123, 214, 236, 255, 332
BspANI GGCC 2 cut(s) 114, 563
BspCNI CTCAG 1 cut(s) 477
BspFNI CGCG 1 cut(s) 644
BspHI TCATGA 1 cut(s) 612
BspPI GGATC 2 cut(s) 244, 327
BssECI CCNNGG 2 cut(s) 147, 232
BssMI GATC 6 cut(s) 3, 123, 214, 236, 255, 332
BssSI CACGAG 2 cut(s) 26, 108
BssT1I CCWWGG 2 cut(s) 147, 232
Bst2BI CACGAG 2 cut(s) 26, 108
Bst6I CTCTTC 1 cut(s) 356
BstBAI YACGTR 2 cut(s) 98, 396
BstC8I GCNNGC 2 cut(s) 225, 646
BstDEI CTNAG 1 cut(s) 485
BstF5I GGATG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 644
BstHHI GCGC 2 cut(s) 191, 644
BstKTI GATC 6 cut(s) 6, 126, 217, 239, 258, 335
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 6 cut(s) 3, 123, 214, 236, 255, 332
BstMWI GCNNNNNNNGC 2 cut(s) 142, 188
BstNSI RCATGY 2 cut(s) 57, 652
BstSFI CTRYAG 1 cut(s) 140
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 2 cut(s) 114, 563
BtsCI GGATG 1 cut(s) 65
Cac8I GCNNGC 2 cut(s) 225, 646
CciI TCATGA 1 cut(s) 612
CfoI GCGC 2 cut(s) 191, 644
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 1 cut(s) 397
CviAII CATG 3 cut(s) 54, 613, 649
CviJI RGCY 9 cut(s) 25, 80, 114, 136, 145, 410, 469, 489, 563
CviKI_1 RGCY 9 cut(s) 25, 80, 114, 136, 145, 410, 469, 489, 563
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 485
DpnI GATC 6 cut(s) 5, 125, 216, 238, 257, 334
DpnII GATC 6 cut(s) 3, 123, 214, 236, 255, 332
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 147, 232
Eco72I CACGTG 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 147, 232
ErhI CCWWGG 2 cut(s) 147, 232
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 3 cut(s) 57, 616, 652
FaiI YATR 5 cut(s) 55, 179, 481, 614, 650
FaqI GGGAC 2 cut(s) 491, 641
FatI CATG 3 cut(s) 53, 612, 648
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 2 cut(s) 372, 515
GlaI GCGC 2 cut(s) 190, 643
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 2 cut(s) 114, 563
HhaI GCGC 2 cut(s) 191, 644
Hin1II CATG 3 cut(s) 57, 616, 652
Hin6I GCGC 2 cut(s) 189, 642
HinP1I GCGC 2 cut(s) 189, 642
HincII GTYRAC 2 cut(s) 175, 574
HindII GTYRAC 2 cut(s) 175, 574
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 4 cut(s) 34, 208, 260, 299
Hpy166II GTNNAC 2 cut(s) 175, 574
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 5 cut(s) 212, 251, 264, 508, 613
Hpy8I GTNNAC 2 cut(s) 175, 574
Hpy99I CGWCG 2 cut(s) 252, 408
HpyCH4IV ACGT 7 cut(s) 97, 247, 395, 403, 451, 504, 630
HpyCH4V TGCA 1 cut(s) 648
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 188
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 7 cut(s) 97, 247, 395, 403, 451, 504, 630
Hsp92II CATG 3 cut(s) 57, 616, 652
HspAI GCGC 2 cut(s) 189, 642
Kzo9I GATC 6 cut(s) 3, 123, 214, 236, 255, 332
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 1 cut(s) 497
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 1 cut(s) 296
MaeI CTAG 2 cut(s) 372, 515
MaeII ACGT 7 cut(s) 97, 247, 395, 403, 451, 504, 630
MaeIII GTNAC 3 cut(s) 93, 98, 500
MalI GATC 6 cut(s) 5, 125, 216, 238, 257, 334
MboI GATC 6 cut(s) 3, 123, 214, 236, 255, 332
MboII GAAGA 5 cut(s) 7, 95, 152, 373, 601
MfeI CAATTG 1 cut(s) 496
MflI RGATCY 1 cut(s) 332
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 5 cut(s) 272, 496, 518, 533, 593
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 3 cut(s) 174, 260, 592
MroXI GAANNNNTTC 1 cut(s) 389
MseI TTAA 2 cut(s) 521, 633
MunI CAATTG 1 cut(s) 496
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 2 cut(s) 142, 188
NdeII GATC 6 cut(s) 3, 123, 214, 236, 255, 332
NlaIII CATG 3 cut(s) 57, 616, 652
NmuCI GTSAC 2 cut(s) 93, 98
NspI RCATGY 2 cut(s) 57, 652
PagI TCATGA 1 cut(s) 612
PciI ACATGT 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 4 cut(s) 34, 208, 260, 299
PkrI GCNGC 1 cut(s) 412
PmaCI CACGTG 1 cut(s) 98
PmlI CACGTG 1 cut(s) 98
Ppu21I YACGTR 2 cut(s) 98, 396
PscI ACATGT 1 cut(s) 53
PspCI CACGTG 1 cut(s) 98
PspPI GGNCC 1 cut(s) 562
PsuI RGATCY 1 cut(s) 332
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 521, 633
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 6 cut(s) 3, 123, 214, 236, 255, 332
Sau96I GGNCC 1 cut(s) 562
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 140
Sse9I AATT 5 cut(s) 272, 496, 518, 533, 593
SspI AATATT 1 cut(s) 428
SspMI CTAG 2 cut(s) 372, 515
StyI CCWWGG 2 cut(s) 147, 232
TaiI ACGT 7 cut(s) 100, 250, 398, 406, 454, 507, 633
TaqI TCGA 5 cut(s) 206, 250, 258, 263, 406
TasI AATT 5 cut(s) 272, 496, 518, 533, 593
TfiI GAWTC 4 cut(s) 34, 208, 260, 299
Tru1I TTAA 2 cut(s) 521, 633
Tru9I TTAA 2 cut(s) 521, 633
TseFI GTSAC 2 cut(s) 93, 98
TseI GCWGC 1 cut(s) 410
Tsp45I GTSAC 2 cut(s) 93, 98
TspDTI ATGAA 4 cut(s) 7, 54, 601, 629
XapI RAATTY 2 cut(s) 272, 593
XceI RCATGY 2 cut(s) 57, 652
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 2 cut(s) 372, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.