Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003699

Physical Location & Seq

Genomic Coordinates Reverse (-)

26613302 .. 26627820

Gene Structure 14519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00103630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTGCGGGTCGCCTCATCGAACGGTACAAGAACGATCGGGTTTCGGACCCGAAGAATCGTACCGGAAAGGCCCGAGGAGGCCGATTGCGCTACTATCTCAAGACCGGGATTTGTGGGTGCTGCTCGAGGTGTCGCTCATGGGGTTCAAGAACCCTCCGTGTTCGTTGACCGCCTTTGCTCCGCTTGACCATGCGGTGGAGAATCCTCTCATCGGACCCCTCGTGGTGAATCAACAAGCACCAAATACACGTGCCGATTCATCCCCTACCAAAGCCGAAGAACACCCACTACGTGACACAACTCGTGGCCTAAATCCAATCAAGATCAAGCCTCTACAGCCCTTGGTCAATCGTCTTCCTCAAATCGTCAACATAACAAGAAGTTCACACTACAACCTTTCGATTCAAGATCAGGGACACAATGTTATTGCATCATCAAGAGATAATTCATTCACTCATAAGACAACTATGCTTGTCTCCACTAGCCGAACGGCGGGCACCAACTTCCGGCGCCCTTCAACTCCTCAACTAGCAGAAGCTTCTTCCACCTCAAGCTGCACCATGGCGGTCGAAGCTCGCTTCGATTCCGTCTCCACCGACCTGCACGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

203

Amino Acids

22.36

Weight (kDa)

8.93

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003699)

Species	Orthologous Gene IDs
malus_domestica	MD02G1274200.v1.1
pyrus_communis	pycom16g17950
rosa_chinensis	RchiOBHm_Chr6g0280461
rosa_laevigata	RLG00000001370 RLG00000009404 RLG00000030247
rosa_multiflora	Rmu_sc0001643.1_g000028
rosa_roxburghii	Rroxscaffold_1G00033380 Rroxscaffold_2G00103630 Rroxscaffold_2G00115110 Rroxscaffold_2G00121350 Rroxscaffold_2G00135900 Rroxscaffold_2G00147680 Rroxscaffold_2G00151240 Rroxscaffold_2G00154830 Rroxscaffold_3G00252750 Rroxscaffold_3G00265210 Rroxscaffold_4G00319380 Rroxscaffold_5G00336640 Rroxscaffold_5G00345850 Rroxscaffold_5G00362620 Rroxscaffold_6G00395390 Rroxscaffold_7G00213840
rosa_samantha	Rh2DG086400 Rh2DG086500 Rh3CG266000 Rh5AG437300 Rh5AG440100 Rh5DG008900 Rh5DG439400 Rh6BG460500 Rh6BG487900 Rh6CG493000 Rh7BG326500 Rh7CG102300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	497, 510
AccB7I	CCANNNNNTGG	1 cut(s)	196
AciI	CCGC	6 cut(s)	6, 171, 182, 194, 494, 566
AcvI	CACGTG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	511
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	2 cut(s)	27, 62
AfiI	CCNNNNNNNGG	4 cut(s)	196, 212, 493, 507
AflIII	ACRYGT	1 cut(s)	248
AgsI	TTSAA	3 cut(s)	148, 407, 519
AluBI	AGCT	3 cut(s)	539, 555, 575
AluI	AGCT	3 cut(s)	539, 555, 575
Alw26I	GTCTC	2 cut(s)	481, 595
Ama87I	CYCGRG	2 cut(s)	73, 125
AoxI	GGCC	3 cut(s)	70, 80, 307
ApeKI	GCWGC	2 cut(s)	121, 555
AspLEI	GCGC	2 cut(s)	91, 513
AspS9I	GGNCC	3 cut(s)	47, 71, 215
AsuC2I	CCSGG	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	2 cut(s)	73, 125
AvaII	GGWCC	2 cut(s)	47, 215
BaeGI	GKGCMC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	497, 510
BauI	CACGAG	2 cut(s)	221, 303
BbrPI	CACGTG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	108, 542
BceAI	ACGGC	1 cut(s)	507
BcnI	CCSGG	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	481, 595
BfaI	CTAG	2 cut(s)	483, 530
BfmI	CTRYAG	1 cut(s)	335
BfoI	RGCGCY	1 cut(s)	514
BisI	GCNGC	2 cut(s)	122, 556
BlsI	GCNGC	2 cut(s)	123, 557
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	2 cut(s)	47, 215
BmeT110I	CYCGRG	2 cut(s)	73, 125
BmgT120I	GGNCC	3 cut(s)	47, 71, 215
BmiI	GGNNCC	4 cut(s)	49, 217, 499, 512
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	440
BpiI	GAAGAC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	84, 535
BpuMI	CCSGG	1 cut(s)	107
BsaAI	YACGTR	2 cut(s)	251, 293
BsaHI	GRCGYC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	74, 342, 561
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 212, 493, 507
BseDI	CCNNGG	3 cut(s)	74, 342, 561
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	4 cut(s)	196, 212, 493, 507
BseRI	GAGGAG	2 cut(s)	91, 513
BseSI	GKGCMC	1 cut(s)	500
BseXI	GCAGC	2 cut(s)	108, 542
BsgI	GTGCAG	2 cut(s)	541, 587
Bsh1285I	CGRYCG	2 cut(s)	38, 570
BshFI	GGCC	3 cut(s)	72, 82, 309
BshNI	GGYRCC	2 cut(s)	497, 510
BsiEI	CGRYCG	2 cut(s)	38, 570
BsiHKCI	CYCGRG	2 cut(s)	73, 125
BsiSI	CCGG	3 cut(s)	64, 106, 508
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	4 cut(s)	196, 212, 493, 507
BsmAI	GTCTC	2 cut(s)	481, 595
BsmBI	CGTCTC	1 cut(s)	595
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	3 cut(s)	72, 82, 309
BsoBI	CYCGRG	2 cut(s)	73, 125
Bsp1286I	GDGCHC	1 cut(s)	500
Bsp143I	GATC	3 cut(s)	35, 324, 409
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	6 cut(s)	6, 171, 182, 194, 494, 566
BspANI	GGCC	3 cut(s)	72, 82, 309
BspLI	GGNNCC	4 cut(s)	49, 217, 499, 512
BspT107I	GGYRCC	2 cut(s)	497, 510
BssECI	CCNNGG	3 cut(s)	74, 342, 561
BssMI	GATC	3 cut(s)	35, 324, 409
BssNI	GRCGYC	1 cut(s)	511
BssSI	CACGAG	2 cut(s)	221, 303
BssT1I	CCWWGG	2 cut(s)	342, 561
Bst2BI	CACGAG	2 cut(s)	221, 303
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	511
BstBAI	YACGTR	2 cut(s)	251, 293
BstC8I	GCNNGC	2 cut(s)	496, 577
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	514
BstHHI	GCGC	2 cut(s)	91, 513
BstKTI	GATC	3 cut(s)	38, 327, 412
BstMAI	GTCTC	2 cut(s)	481, 595
BstMBI	GATC	3 cut(s)	35, 324, 409
BstMCI	CGRYCG	2 cut(s)	38, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 337, 572
BstSCI	CCNGG	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	2 cut(s)	108, 542
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	3 cut(s)	72, 82, 309
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	260
Cac8I	GCNNGC	2 cut(s)	496, 577
CfoI	GCGC	2 cut(s)	91, 513
Cfr13I	GGNCC	3 cut(s)	47, 71, 215
Csp6I	GTAC	2 cut(s)	26, 61
CviAII	CATG	3 cut(s)	139, 191, 562
CviQI	GTAC	2 cut(s)	26, 61
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	3 cut(s)	37, 326, 411
DpnII	GATC	3 cut(s)	35, 324, 409
DraIII	CACNNNGTG	1 cut(s)	293
Eco130I	CCWWGG	2 cut(s)	342, 561
Eco47I	GGWCC	2 cut(s)	47, 215
Eco72I	CACGTG	1 cut(s)	251
Eco88I	CYCGRG	2 cut(s)	73, 125
EcoT14I	CCWWGG	2 cut(s)	342, 561
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	342, 561
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	3 cut(s)	142, 194, 565
FaiI	YATR	6 cut(s)	140, 192, 374, 459, 470, 563
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	3 cut(s)	138, 190, 561
FauI	CCCGC	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	122, 556
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	2 cut(s)	122, 556
FspBI	CTAG	2 cut(s)	483, 530
GlaI	GCGC	2 cut(s)	90, 512
GluI	GCNGC	2 cut(s)	122, 556
HaeII	RGCGCY	1 cut(s)	514
HaeIII	GGCC	3 cut(s)	72, 82, 309
HapII	CCGG	3 cut(s)	64, 106, 508
HhaI	GCGC	2 cut(s)	91, 513
Hin1I	GRCGYC	1 cut(s)	511
Hin1II	CATG	3 cut(s)	142, 194, 565
Hin6I	GCGC	2 cut(s)	89, 511
HinP1I	GCGC	2 cut(s)	89, 511
HincII	GTYRAC	2 cut(s)	168, 370
HindII	GTYRAC	2 cut(s)	168, 370
HindIII	AAGCTT	1 cut(s)	537
HinfI	GANTC	6 cut(s)	56, 202, 229, 257, 403, 584
HpaII	CCGG	3 cut(s)	64, 106, 508
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	168, 370, 386
Hpy188I	TCNGA	2 cut(s)	47, 215
Hpy188III	TCNNGA	5 cut(s)	101, 148, 322, 407, 438
Hpy8I	GTNNAC	3 cut(s)	168, 370, 386
HpyAV	CCTTC	1 cut(s)	525
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	250, 292
HpyCH4V	TGCA	3 cut(s)	431, 558, 604
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 337, 572
HpySE526I	ACGT	2 cut(s)	250, 292
Hsp92I	GRCGYC	1 cut(s)	511
Hsp92II	CATG	3 cut(s)	142, 194, 565
HspAI	GCGC	2 cut(s)	89, 511
KasI	GGCGCC	1 cut(s)	510
Kzo9I	GATC	3 cut(s)	35, 324, 409
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	4 cut(s)	77, 119, 398, 521
Lsp1109I	GCAGC	2 cut(s)	108, 542
LweI	GCATC	1 cut(s)	440
MaeI	CTAG	2 cut(s)	483, 530
MaeII	ACGT	2 cut(s)	250, 292
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	3 cut(s)	37, 326, 411
MboI	GATC	3 cut(s)	35, 324, 409
MboII	GAAGA	4 cut(s)	65, 290, 347, 534
MhlI	GDGCHC	1 cut(s)	500
MluCI	AATT	1 cut(s)	445
Mly113I	GGCGCC	1 cut(s)	511
MspI	CCGG	3 cut(s)	64, 106, 508
MspR9I	CCNGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	88, 337, 572
NarI	GGCGCC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	3 cut(s)	35, 324, 409
NlaIII	CATG	3 cut(s)	142, 194, 565
NlaIV	GGNNCC	4 cut(s)	49, 217, 499, 512
NmuCI	GTSAC	1 cut(s)	293
PaeR7I	CTCGAG	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	6 cut(s)	56, 202, 229, 257, 403, 584
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	123, 557
Ple19I	CGATCG	1 cut(s)	38
PluTI	GGCGCC	1 cut(s)	514
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	2 cut(s)	251, 293
PspCI	CACGTG	1 cut(s)	251
PspN4I	GGNNCC	4 cut(s)	49, 217, 499, 512
PspPI	GGNCC	3 cut(s)	47, 71, 215
PspXI	VCTCGAGB	1 cut(s)	125
PsrI	GAACNNNNNNTAC	2 cut(s)	273, 305
PvuI	CGATCG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	27, 62
RsaNI	GTAC	2 cut(s)	26, 61
SatI	GCNGC	2 cut(s)	122, 556
Sau3AI	GATC	3 cut(s)	35, 324, 409
Sau96I	GGNCC	3 cut(s)	47, 71, 215
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	500
SetI	ASST	9 cut(s)	132, 253, 295, 399, 541, 551, 557, 577, 603
SfaNI	GCATC	1 cut(s)	440
SfcI	CTRYAG	1 cut(s)	335
SfoI	GGCGCC	1 cut(s)	512
Sfr274I	CTCGAG	1 cut(s)	125
SinI	GGWCC	2 cut(s)	47, 215
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	3 cut(s)	99, 125, 550
SmoI	CTYRAG	3 cut(s)	99, 125, 550
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	6 cut(s)	6, 171, 182, 194, 494, 566
SspDI	GGCGCC	1 cut(s)	510
SspMI	CTAG	2 cut(s)	483, 530
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	2 cut(s)	342, 561
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	253, 295
TaqI	TCGA	5 cut(s)	19, 126, 401, 570, 582
TasI	AATT	1 cut(s)	445
TfiI	GAWTC	6 cut(s)	56, 202, 229, 257, 403, 584
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	121, 555
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	249, 438
TspGWI	ACGGA	2 cut(s)	147, 577
Van91I	CCANNNNNTGG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	47, 215
XhoI	CTCGAG	1 cut(s)	125
XspI	CTAG	2 cut(s)	483, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.