Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

283336 .. 283737

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g00390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAATTACTTTCCGGACGAGGTAATCGAGCAGATATTCGAGTCAGTGACCTCGCAGAAGGACCGAAACGCGGTGTCGTTGGTGTGCAAATCGTGGTACAAAATCGAGAGGTTCAGTAGGGAGAGAGTGTTCATCGGGAATTGCTATGCAATCAGTCCGGAGAGAGTGATCGAGAGGTTTCCGGGGCTCAAGTCCCTGACTTTGAAGGGAAAGCCTCACTTCGCCGACTTCAATCTGGTTCCTTACGAGTGGGGCGGCTTTCTGCAACCGTGGATTGAAGCTCTCGCCGACGGCCGGGTTGGCCTGGAGGAGCTCCGCCTCAAGAGGATCGATCGTCTCCGACGAAAGCCTCGAGCTTCTTTCCAGGTCCTTCCCCAATTTCAAGTCTTTGGTTCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0007154 GO:0007165 GO:0007275 GO:0008144 GO:0008150 GO:0009555 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009908 GO:0009987 GO:0010011 GO:0010033 GO:0010035 GO:0010152 GO:0010167 GO:0016020 GO:0019005 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031090 GO:0031461 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048527 GO:0048528 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071249 GO:0071310 GO:0071365 GO:0071495 GO:0080022 GO:0090567 GO:0090696 GO:0098588 GO:0098805 GO:0099402 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like LRR_6

Protein Analysis

134

Amino Acids

15.6

Weight (kDa)

9.3

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	4 - 41	9.1e-18	F-box
F-box-like	PF12937	5 - 35	1.3e-06	F-box-like
Transp_inhibit	PF18791	61 - 107	1.1e-22	Transport inhibitor response 1 protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	2 cut(s)	13, 157
AciI	CCGC	3 cut(s)	71, 255, 316
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	292
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	70, 294
AgsI	TTSAA	4 cut(s)	205, 232, 278, 383
AjnI	CCWGG	2 cut(s)	303, 363
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	3 cut(s)	281, 313, 356
AluI	AGCT	3 cut(s)	281, 313, 356
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	351
Aor13HI	TCCGGA	2 cut(s)	13, 157
AoxI	GGCC	2 cut(s)	292, 301
AspS9I	GGNCC	2 cut(s)	61, 367
AsuC2I	CCSGG	2 cut(s)	183, 296
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	2 cut(s)	61, 367
BanII	GRGCYC	2 cut(s)	189, 315
Bbv12I	GWGCWC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	2 cut(s)	305, 365
BcnI	CCSGG	2 cut(s)	183, 296
BcoDI	GTCTC	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	300
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	4 cut(s)	183, 296, 305, 365
Bme18I	GGWCC	2 cut(s)	61, 367
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	61, 367
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	4 cut(s)	183, 296, 305, 365
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	2 cut(s)	173, 305
BpuMI	CCSGG	2 cut(s)	183, 296
Bsa29I	ATCGAT	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	182, 269
BsaWI	WCCGGW	2 cut(s)	13, 157
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 294
BseAI	TCCGGA	2 cut(s)	13, 157
BseBI	CCWGG	2 cut(s)	305, 365
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	182, 269
BseLI	CCNNNNNNNGG	2 cut(s)	70, 294
BseRI	GAGGAG	1 cut(s)	323
BseX3I	CGGCCG	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	295, 334
BshFI	GGCC	2 cut(s)	294, 303
BshVI	ATCGAT	1 cut(s)	330
BsiEI	CGRYCG	2 cut(s)	295, 334
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	4 cut(s)	14, 158, 182, 295
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	70, 294
BsmAI	GTCTC	1 cut(s)	341
BsmBI	CGTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	294, 303
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	2 cut(s)	189, 315
Bsp13I	TCCGGA	2 cut(s)	13, 157
Bsp143I	GATC	3 cut(s)	168, 327, 331
BspACI	CCGC	3 cut(s)	71, 255, 316
BspANI	GGCC	2 cut(s)	294, 303
BspDI	ATCGAT	1 cut(s)	330
BspEI	TCCGGA	2 cut(s)	13, 157
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	182, 269
BssMI	GATC	3 cut(s)	168, 327, 331
Bst2UI	CCWGG	2 cut(s)	305, 365
Bst4CI	ACNGT	1 cut(s)	270
BstDSI	CCRYGG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	3 cut(s)	171, 330, 334
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	168, 327, 331
BstMCI	CGRYCG	2 cut(s)	295, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	2 cut(s)	305, 365
BstSCI	CCNGG	4 cut(s)	181, 294, 303, 363
BstUI	CGCG	1 cut(s)	71
BstZI	CGGCCG	1 cut(s)	292
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	2 cut(s)	294, 303
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	61, 367
ClaI	ATCGAT	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	97
CviJI	RGCY	9 cut(s)	187, 214, 258, 281, 294, 303, 313, 349, 356
CviKI_1	RGCY	9 cut(s)	187, 214, 258, 281, 294, 303, 313, 349, 356
CviQI	GTAC	1 cut(s)	97
DpnI	GATC	3 cut(s)	170, 329, 333
DpnII	GATC	3 cut(s)	168, 327, 331
EaeI	YGGCCR	1 cut(s)	292
EagI	CGGCCG	1 cut(s)	292
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	313
EclXI	CGGCCG	1 cut(s)	292
Eco24I	GRGCYC	2 cut(s)	189, 315
Eco47I	GGWCC	2 cut(s)	61, 367
Eco52I	CGGCCG	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	2 cut(s)	303, 363
EcoT38I	GRGCYC	2 cut(s)	189, 315
Esp3I	CGTCTC	1 cut(s)	341
FaiI	YATR	1 cut(s)	147
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	256
FriOI	GRGCYC	2 cut(s)	189, 315
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	2 cut(s)	294, 303
HapII	CCGG	4 cut(s)	14, 158, 182, 295
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	4 cut(s)	14, 158, 182, 295
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	6 cut(s)	14, 106, 136, 158, 172, 322
Hpy99I	CGWCG	2 cut(s)	293, 345
HpyAV	CCTTC	3 cut(s)	52, 199, 380
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	87, 149, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
Kpn2I	TCCGGA	2 cut(s)	13, 157
Kzo9I	GATC	3 cut(s)	168, 327, 331
LmnI	GCTCC	2 cut(s)	310, 318
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	170, 329, 333
MboI	GATC	3 cut(s)	168, 327, 331
MhlI	GDGCHC	2 cut(s)	189, 315
MluCI	AATT	3 cut(s)	4, 139, 377
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	9 cut(s)	13, 61, 102, 168, 225, 301, 318, 329, 360
MroI	TCCGGA	2 cut(s)	13, 157
MspI	CCGG	4 cut(s)	14, 158, 182, 295
MspR9I	CCNGG	4 cut(s)	183, 296, 305, 365
MvaI	CCWGG	2 cut(s)	305, 365
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	300
NciI	CCSGG	2 cut(s)	183, 296
NdeII	GATC	3 cut(s)	168, 327, 331
NlaIV	GGNNCC	1 cut(s)	240
NmuCI	GTSAC	1 cut(s)	46
PaeR7I	CTCGAG	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 340, 349
PkrI	GCNGC	1 cut(s)	257
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	367
Psp124BI	GAGCTC	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	367
Psp6I	CCWGG	2 cut(s)	303, 363
PspGI	CCWGG	2 cut(s)	303, 363
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	61, 367
PspPPI	RGGWCCY	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	351
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	168, 327, 331
Sau96I	GGNCC	2 cut(s)	61, 367
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	183, 296, 305, 365
SduI	GDGCHC	2 cut(s)	189, 315
SetI	ASST	8 cut(s)	24, 53, 113, 179, 283, 315, 358, 369
SfiI	GGCCNNNNNGGCC	1 cut(s)	300
Sfr274I	CTCGAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	61, 367
SlaI	CTCGAG	1 cut(s)	351
SmlI	CTYRAG	3 cut(s)	188, 320, 351
SmoI	CTYRAG	3 cut(s)	188, 320, 351
Sse9I	AATT	3 cut(s)	4, 139, 377
SsiI	CCGC	3 cut(s)	71, 255, 316
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	4 cut(s)	181, 294, 303, 363
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	6 cut(s)	27, 39, 105, 171, 330, 352
TaqII	GACCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	4, 139, 377
TauI	GCSGC	1 cut(s)	258
TscAI	CASTG	1 cut(s)	51
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	17, 121
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	61, 367
XhoI	CTCGAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.