Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

52022821 .. 52029136

Gene Structure 6316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTTGGGGTGTGCTGCAGCACACCTCAGCCACCCCCTACATCCGTGCCTGGTTTCCAGGCCGAGAAAACGTTACACAAACTCTGTCCAAAACCGTAGGTTGATAGTTATCAATCCAGTTCTGCAGAAAGTTGACAAAAGCTATTCTCCTAGCATCATCTTCATCTTTACCAATGTAGGAGAAAAAAAGCTCATTAAATTCAATGTTTCGCATTTGACGCCATATGTTCTGCCATCTCCTTTTCTCCGAAGCAGTAGCACGACCAGCTCCACAACGCCTCAAATCATTCCGAACCCCACACCTTCGAACCCGGCTCGCTCAACAACTAAGGCTCGGTCGGTACTCCTCGCCGACGCCGAGTCGATTCTCGGCCCCATCATCGGCGCCACCGCGTTGGGAGTGGTGAAGATCACCGATCCCGCCGTTCGATTGCATCCAAAAGCTAATCGCGCATGGCTACCGAGCGGTGAAGCGAAGTTGCCGATGAAATTAATCGAGTCCGTTGTAAATGCCACGATTCGGAGGACGATCGATGGAGCTACCGGTGCCGAAGACGCCGTCGTCGCGGTGACATCGATTTCGCTGCGGATTCACGGCGATTGCTTGCTTCAGATAGTGAGGACTTGCTATAATATCTATTTGGAGAGTAAGAATATATTGAATCGTACGACGGCCGAGCGCTTCATAGAAGTATCCAGCTTGACTATAAGCTTCTCATTTCAGCCACAAGTTGGTTATGTAGGTCTAAACACATTGATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

254

Amino Acids

27.67

Weight (kDa)

10.02

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AccB1I	GGYRCC	2 cut(s)	383, 545
AccB7I	CCANNNNNTGG	1 cut(s)	731
AccBSI	CCGCTC	1 cut(s)	465
AccII	CGCG	3 cut(s)	392, 450, 566
AciI	CCGC	5 cut(s)	390, 420, 465, 566, 586
AclI	AACGTT	1 cut(s)	70
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	672
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	593
AcyI	GRCGYC	4 cut(s)	218, 354, 384, 555
AfaI	GTAC	2 cut(s)	342, 667
AfeI	AGCGCT	1 cut(s)	680
AfiI	CCNNNNNNNGG	3 cut(s)	380, 519, 731
AgeI	ACCGGT	1 cut(s)	542
AgsI	TTSAA	2 cut(s)	202, 661
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	2 cut(s)	48, 56
AluBI	AGCT	7 cut(s)	141, 190, 267, 443, 539, 699, 711
AluI	AGCT	7 cut(s)	141, 190, 267, 443, 539, 699, 711
AlwI	GGATC	1 cut(s)	410
Aor51HI	AGCGCT	1 cut(s)	680
AoxI	GGCC	3 cut(s)	59, 370, 672
ApeKI	GCWGC	3 cut(s)	14, 17, 583
ApoI	RAATTY	1 cut(s)	197
ArsI	GACNNNNNNTTYG	4 cut(s)	543, 562, 575, 594
AseI	ATTAAT	1 cut(s)	491
AsiGI	ACCGGT	1 cut(s)	542
AspLEI	GCGC	3 cut(s)	386, 452, 681
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	4 cut(s)	403, 415, 479, 580
AsuII	TTCGAA	1 cut(s)	305
BanI	GGYRCC	2 cut(s)	383, 545
BbsI	GAAGAC	1 cut(s)	558
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	29, 570
BccI	CCATC	3 cut(s)	241, 383, 527
BceAI	ACGGC	4 cut(s)	407, 542, 610, 687
BcgI	CGANNNNNNTGC	2 cut(s)	565, 599
BciT130I	CCWGG	2 cut(s)	50, 58
BciVI	GTATCC	1 cut(s)	703
BcnI	CCSGG	1 cut(s)	311
BfaI	CTAG	1 cut(s)	150
BfmI	CTRYAG	2 cut(s)	15, 122
BfoI	RGCGCY	2 cut(s)	387, 682
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	3 cut(s)	15, 18, 584
BlsI	GCNGC	3 cut(s)	16, 19, 585
Bme1390I	CCNGG	3 cut(s)	50, 58, 311
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	3 cut(s)	373, 385, 547
BmrFI	CCNGG	3 cut(s)	50, 58, 311
BmsI	GCATC	2 cut(s)	162, 442
BpiI	GAAGAC	1 cut(s)	558
Bpu10I	CCTNAGC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	311
Bsa29I	ATCGAT	2 cut(s)	531, 575
BsaBI	GATNNNNATC	1 cut(s)	107
BsaHI	GRCGYC	4 cut(s)	218, 354, 384, 555
BsaWI	WCCGGW	1 cut(s)	542
Bsc4I	CCNNNNNNNGG	3 cut(s)	380, 519, 731
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	1 cut(s)	116
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	50, 58
BseCI	ATCGAT	2 cut(s)	531, 575
BseGI	GGATG	2 cut(s)	40, 433
BseJI	GATNNNNATC	1 cut(s)	107
BseLI	CCNNNNNNNGG	3 cut(s)	380, 519, 731
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	1 cut(s)	335
BseX3I	CGGCCG	1 cut(s)	672
BseXI	GCAGC	2 cut(s)	29, 570
Bsh1236I	CGCG	3 cut(s)	392, 450, 566
Bsh1285I	CGRYCG	3 cut(s)	338, 531, 675
BshFI	GGCC	3 cut(s)	61, 372, 674
BshNI	GGYRCC	2 cut(s)	383, 545
BshTI	ACCGGT	1 cut(s)	542
BshVI	ATCGAT	2 cut(s)	531, 575
BsiEI	CGRYCG	3 cut(s)	338, 531, 675
BsiSI	CCGG	2 cut(s)	311, 543
BsiWI	CGTACG	1 cut(s)	665
BslI	CCNNNNNNNGG	3 cut(s)	380, 519, 731
BsnI	GGCC	3 cut(s)	61, 372, 674
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	3 cut(s)	408, 415, 528
BspACI	CCGC	5 cut(s)	390, 420, 465, 566, 586
BspANI	GGCC	3 cut(s)	61, 372, 674
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	2 cut(s)	531, 575
BspFNI	CGCG	3 cut(s)	392, 450, 566
BspLI	GGNNCC	3 cut(s)	373, 385, 547
BspMAI	CTGCAG	2 cut(s)	19, 126
BspPI	GGATC	1 cut(s)	410
BspT104I	TTCGAA	1 cut(s)	305
BspT107I	GGYRCC	2 cut(s)	383, 545
BsrBI	CCGCTC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	542
BssMI	GATC	3 cut(s)	408, 415, 528
BssNI	GRCGYC	4 cut(s)	218, 354, 384, 555
Bst2UI	CCWGG	2 cut(s)	50, 58
Bst4CI	ACNGT	1 cut(s)	95
BstACI	GRCGYC	4 cut(s)	218, 354, 384, 555
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	316, 605
BstDEI	CTNAG	2 cut(s)	26, 327
BstF5I	GGATG	2 cut(s)	40, 433
BstFNI	CGCG	3 cut(s)	392, 450, 566
BstH2I	RGCGCY	2 cut(s)	387, 682
BstHHI	GCGC	3 cut(s)	386, 452, 681
BstKTI	GATC	3 cut(s)	411, 418, 531
BstMBI	GATC	3 cut(s)	408, 415, 528
BstMCI	CGRYCG	3 cut(s)	338, 531, 675
BstMWI	GCNNNNNNNGC	6 cut(s)	217, 264, 449, 545, 554, 563
BstNI	CCWGG	2 cut(s)	50, 58
BstSCI	CCNGG	3 cut(s)	48, 56, 309
BstSFI	CTRYAG	2 cut(s)	15, 122
BstUI	CGCG	3 cut(s)	392, 450, 566
BstV1I	GCAGC	2 cut(s)	29, 570
BstV2I	GAAGAC	1 cut(s)	558
BstXI	CCANNNNNNTGG	1 cut(s)	394
BstZI	CGGCCG	1 cut(s)	672
Bsu15I	ATCGAT	2 cut(s)	531, 575
BsuI	GTATCC	1 cut(s)	703
BsuRI	GGCC	3 cut(s)	61, 372, 674
BsuTUI	ATCGAT	2 cut(s)	531, 575
BtsCI	GGATG	2 cut(s)	40, 433
Cac8I	GCNNGC	2 cut(s)	316, 605
CfoI	GCGC	3 cut(s)	386, 452, 681
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	371
ClaI	ATCGAT	2 cut(s)	531, 575
CseI	GACGC	3 cut(s)	226, 362, 563
Csp6I	GTAC	2 cut(s)	341, 666
CspAI	ACCGGT	1 cut(s)	542
CviAII	CATG	1 cut(s)	453
CviQI	GTAC	2 cut(s)	341, 666
DdeI	CTNAG	2 cut(s)	26, 327
DinI	GGCGCC	1 cut(s)	385
DpnI	GATC	3 cut(s)	410, 417, 530
DpnII	GATC	3 cut(s)	408, 415, 528
DrdI	GACNNNNNNGTC	1 cut(s)	560
DriI	GACNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	560
EaeI	YGGCCR	1 cut(s)	672
EagI	CGGCCG	1 cut(s)	672
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EclXI	CGGCCG	1 cut(s)	672
Eco47III	AGCGCT	1 cut(s)	680
Eco52I	CGGCCG	1 cut(s)	672
Eco57I	CTGAAG	1 cut(s)	593
EcoRII	CCWGG	2 cut(s)	48, 56
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
FaeI	CATG	1 cut(s)	456
FaiI	YATR	8 cut(s)	223, 225, 454, 630, 656, 686, 707, 738
FatI	CATG	1 cut(s)	452
FauI	CCCGC	1 cut(s)	427
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	15, 18, 584
FokI	GGATG	2 cut(s)	27, 420
Fsp4HI	GCNGC	3 cut(s)	15, 18, 584
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	3 cut(s)	385, 451, 680
GluI	GCNGC	3 cut(s)	15, 18, 584
HaeII	RGCGCY	2 cut(s)	387, 682
HaeIII	GGCC	3 cut(s)	61, 372, 674
HapII	CCGG	2 cut(s)	311, 543
HgaI	GACGC	3 cut(s)	226, 362, 563
HhaI	GCGC	3 cut(s)	386, 452, 681
Hin1I	GRCGYC	4 cut(s)	218, 354, 384, 555
Hin1II	CATG	1 cut(s)	456
Hin6I	GCGC	3 cut(s)	384, 450, 679
HinP1I	GCGC	3 cut(s)	384, 450, 679
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	6 cut(s)	359, 364, 497, 517, 589, 661
HpaII	CCGG	2 cut(s)	311, 543
HphI	GGTGA	4 cut(s)	403, 415, 479, 580
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	4 cut(s)	248, 291, 522, 612
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	4 cut(s)	356, 563, 566, 673
HpyAV	CCTTC	1 cut(s)	312
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	17, 124, 433
HpyF10VI	GCNNNNNNNGC	6 cut(s)	217, 264, 449, 545, 554, 563
HpyF3I	CTNAG	2 cut(s)	26, 327
HpySE526I	ACGT	1 cut(s)	70
Hsp92I	GRCGYC	4 cut(s)	218, 354, 384, 555
Hsp92II	CATG	1 cut(s)	456
HspAI	GCGC	3 cut(s)	384, 450, 679
KasI	GGCGCC	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	408, 415, 528
LmnI	GCTCC	2 cut(s)	272, 536
LpnPI	CCDG	9 cut(s)	35, 43, 62, 70, 129, 277, 324, 556, 709
Lsp1109I	GCAGC	2 cut(s)	29, 570
LweI	GCATC	2 cut(s)	162, 442
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	71, 568
MalI	GATC	3 cut(s)	410, 417, 530
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	3 cut(s)	408, 415, 528
MboII	GAAGA	3 cut(s)	151, 418, 563
MluCI	AATT	2 cut(s)	197, 488
Mly113I	GGCGCC	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	368, 506
MnlI	CCTC	5 cut(s)	35, 288, 356, 516, 612
MseI	TTAA	3 cut(s)	195, 491, 763
MspI	CCGG	2 cut(s)	311, 543
MspR9I	CCNGG	3 cut(s)	50, 58, 311
MvaI	CCWGG	2 cut(s)	50, 58
MvnI	CGCG	3 cut(s)	392, 450, 566
MwoI	GCNNNNNNNGC	6 cut(s)	217, 264, 449, 545, 554, 563
NarI	GGCGCC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	311
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	3 cut(s)	408, 415, 528
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	3 cut(s)	373, 385, 547
NmeAIII	GCCGAG	4 cut(s)	87, 348, 382, 700
NmuCI	GTSAC	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	364, 517, 589, 661
Pfl23II	CGTACG	1 cut(s)	665
PflFI	GACNNNGTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	731
PinAI	ACCGGT	1 cut(s)	542
PkrI	GCNGC	3 cut(s)	16, 19, 585
Ple19I	CGATCG	1 cut(s)	531
PleI	GAGTC	2 cut(s)	367, 505
PluTI	GGCGCC	1 cut(s)	387
PpsI	GAGTC	2 cut(s)	367, 505
PshBI	ATTAAT	1 cut(s)	491
Psp1406I	AACGTT	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	48, 56
PspGI	CCWGG	2 cut(s)	48, 56
PspLI	CGTACG	1 cut(s)	665
PspN4I	GGNNCC	3 cut(s)	373, 385, 547
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	2 cut(s)	19, 126
PsyI	GACNNNGTC	1 cut(s)	557
PvuI	CGATCG	1 cut(s)	531
RsaI	GTAC	2 cut(s)	342, 667
RsaNI	GTAC	2 cut(s)	341, 666
SaqAI	TTAA	3 cut(s)	195, 491, 763
SatI	GCNGC	3 cut(s)	15, 18, 584
Sau3AI	GATC	3 cut(s)	408, 415, 528
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	368, 506
ScrFI	CCNGG	3 cut(s)	50, 58, 311
SfaNI	GCATC	2 cut(s)	162, 442
SfcI	CTRYAG	2 cut(s)	15, 122
SfoI	GGCGCC	1 cut(s)	385
SfuI	TTCGAA	1 cut(s)	305
Sse9I	AATT	2 cut(s)	197, 488
SsiI	CCGC	5 cut(s)	390, 420, 465, 566, 586
SspDI	GGCGCC	1 cut(s)	383
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	3 cut(s)	48, 56, 309
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	6 cut(s)	305, 362, 427, 495, 531, 575
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	197, 488
TfiI	GAWTC	4 cut(s)	364, 517, 589, 661
Tru1I	TTAA	3 cut(s)	195, 491, 763
Tru9I	TTAA	3 cut(s)	195, 491, 763
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	3 cut(s)	14, 17, 583
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	151, 500, 673
TspGWI	ACGGA	2 cut(s)	33, 490
Tth111I	GACNNNGTC	1 cut(s)	557
Van91I	CCANNNNNTGG	1 cut(s)	731
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.