RchiOBHm_Chr7g0225111

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005204
Physical Location & Seq
Reverse (-)
47559735 .. 47560370
636 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20160

Sequence Viewer

Length: 417 bp
ATGGACCTGCTGGTGCTGAAGAAGTTGCTGTCAGTAGTGGCATCGATTTCGCTGCAGATTCACGACGATTGCTTGCTTCAGATAGTGAGGACTTGCTATAATATCTATTTGGGGAGTAAGAATATATTGAATAAGACGAAGGGCGAGCGGTCAGTCCTCTCTCTCTTCCGATTTCACCTGCATTGCCCCGTCGTTTACTTGCTTAGTGCTTCTTGTCTTGAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTTTCTTCTTGAGATCATGACAAGGCGCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCAGGATATAGATCAAAGAATAGGACTTGGATTTGTAGAACCTATGATGTTGTTATTTTCTTAGTTATTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

138

Amino Acids

15.94

Weight (kDa)

8.62

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCB PF16213 2 - 46 5.8e-06 Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
Acc36I ACCTGC 2 cut(s) 15, 186
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 316
AcuI CTGAAG 3 cut(s) 38, 62, 327
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 316
AspLEI GCGC 1 cut(s) 309
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 39
BcgI CGANNNNNNTGC 4 cut(s) 30, 34, 64, 68
BfmI CTRYAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 310
BfuAI ACCTGC 2 cut(s) 15, 186
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmsI GCATC 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 4 cut(s) 239, 293, 311, 331
Bsa29I ATCGAT 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 352
Bse3DI GCAATG 2 cut(s) 181, 329
Bse8I GATNNNNATC 1 cut(s) 352
BseCI ATCGAT 1 cut(s) 44
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 352
BseMI GCAATG 2 cut(s) 181, 329
BseXI GCAGC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 44
Bsp143I GATC 2 cut(s) 294, 353
BspACI CCGC 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 44
BspHI TCATGA 1 cut(s) 297
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 2 cut(s) 15, 186
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 2 cut(s) 181, 329
BssMI GATC 2 cut(s) 294, 353
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 2 cut(s) 74, 146
BstDEI CTNAG 3 cut(s) 203, 264, 403
BstF5I GGATG 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 1 cut(s) 309
BstKTI GATC 2 cut(s) 297, 356
BstMBI GATC 2 cut(s) 294, 353
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 229
BveI ACCTGC 2 cut(s) 15, 186
Cac8I GCNNGC 2 cut(s) 74, 146
CciI TCATGA 1 cut(s) 297
CfoI GCGC 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 44
CviAII CATG 1 cut(s) 298
CviJI RGCY 2 cut(s) 263, 271
CviKI_1 RGCY 2 cut(s) 263, 271
DdeI CTNAG 3 cut(s) 203, 264, 403
DpnI GATC 2 cut(s) 296, 355
DpnII GATC 2 cut(s) 294, 353
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 3 cut(s) 38, 62, 327
FaeI CATG 1 cut(s) 301
FaiI YATR 6 cut(s) 99, 125, 252, 299, 351, 387
FatI CATG 1 cut(s) 297
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 53
GlaI GCGC 1 cut(s) 308
GluI GCNGC 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 310
HhaI GCGC 1 cut(s) 309
Hin1II CATG 1 cut(s) 301
Hin6I GCGC 1 cut(s) 307
HinP1I GCGC 1 cut(s) 307
HinfI GANTC 1 cut(s) 58
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 81, 170
Hpy188III TCNNGA 5 cut(s) 62, 218, 290, 298, 345
Hpy8I GTNNAC 1 cut(s) 196
Hpy99I CGWCG 2 cut(s) 68, 194
HpyAV CCTTC 2 cut(s) 133, 351
HpyCH4V TGCA 2 cut(s) 55, 181
HpyF3I CTNAG 3 cut(s) 203, 264, 403
Hsp92II CATG 1 cut(s) 301
HspAI GCGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 294, 353
LmnI GCTCC 1 cut(s) 268
LpnPI CCDG 3 cut(s) 20, 191, 330
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 50
MalI GATC 2 cut(s) 296, 355
MbiI CCGCTC 1 cut(s) 148
MboI GATC 2 cut(s) 294, 353
MboII GAAGA 3 cut(s) 31, 157, 278
MfeI CAATTG 1 cut(s) 257
MluCI AATT 2 cut(s) 257, 316
MnlI CCTC 5 cut(s) 81, 167, 214, 232, 238
MunI CAATTG 1 cut(s) 257
NdeII GATC 2 cut(s) 294, 353
NlaIII CATG 1 cut(s) 301
PagI TCATGA 1 cut(s) 297
PaqCI CACCTGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 57
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 2 cut(s) 294, 353
Sau96I GGNCC 1 cut(s) 4
SetI ASST 5 cut(s) 9, 180, 273, 386, 416
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 4 cut(s) 218, 272, 290, 310
SmoI CTYRAG 4 cut(s) 218, 272, 290, 310
Sse9I AATT 2 cut(s) 257, 316
SsiI CCGC 1 cut(s) 148
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 257, 316
TfiI GAWTC 1 cut(s) 58
TseI GCWGC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.