Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002855.1

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

19832 .. 20670

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002855.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggatggaaccgtggctgcagcacgtgttctcgtttctgcagtcggacagcgatcggaactcgatctcgctgacgttagattcatcatgctcaaagggaagccgcacttcgccgacttcaatctggtgtcggagggctggggtggctacgtgtatccctggatcgccgccatggccggtgcttatccttggctcgaggagatcaggctcaagaggatggtcgtcaccgacgagagcttggagctgattgcaactccgctaggttcatttcgtgtgccgaaccaggcggtgaatttttcgcagaggtggagctcggtaaaggctgtgaatgctcagccgaagaggagagattcgattgtgcctcttgcggccacgattgttgcgcctgaggatgttgagaaagtggaggcagaggactatgagcaattggctaaggagcttgggagtgcttctcttcttgagatcatgacaaggcgcttgagaaattcggcaacgacatggctattgccttcaggtaattcattttttcggttcatttatgtcatttctgcctctgtgctatgttgtttcgatgattattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

193

Amino Acids

21.5

Weight (kDa)

5.29

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	104, 168, 257, 287, 368
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	2 cut(s)	174, 369
AcsI	RAATTY	2 cut(s)	292, 484
AcuI	CTGAAG	1 cut(s)	495
AcvI	CACGTG	1 cut(s)	26
AflIII	ACRYGT	2 cut(s)	25, 150
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	158, 282
AluBI	AGCT	4 cut(s)	237, 244, 312, 439
AluI	AGCT	4 cut(s)	237, 244, 312, 439
Alw21I	GWGCWC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	2 cut(s)	174, 369
ApeKI	GCWGC	2 cut(s)	17, 20
ApoI	RAATTY	2 cut(s)	292, 484
AspLEI	GCGC	2 cut(s)	385, 477
AsuHPI	GGTGA	2 cut(s)	217, 301
AvaI	CYCGRG	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	314
BbrPI	CACGTG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	2 cut(s)	4, 32
BccI	CCATC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	160, 284
BciVI	GTATCC	1 cut(s)	165
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	2 cut(s)	18, 39
BfoI	RGCGCY	1 cut(s)	478
BfuI	GTATCC	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	173
BisI	GCNGC	5 cut(s)	18, 21, 104, 168, 369
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	5 cut(s)	19, 22, 105, 169, 370
Bme1390I	CCNGG	2 cut(s)	160, 284
BmeT110I	CYCGRG	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	160, 284
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu10I	CCTNAGC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	3 cut(s)	194, 479, 499
BsaAI	YACGTR	2 cut(s)	26, 151
BsaJI	CCNNGG	4 cut(s)	12, 158, 171, 188
Bse118I	RCCGGY	1 cut(s)	176
Bse21I	CCTNAGG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	160, 284
BseDI	CCNNGG	4 cut(s)	12, 158, 171, 188
BseGI	GGATG	3 cut(s)	10, 222, 397
BseMII	CTCAG	2 cut(s)	347, 378
BseRI	GAGGAG	2 cut(s)	212, 358
BseXI	GCAGC	2 cut(s)	4, 32
BseYI	CCCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	176, 371
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	314
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	2 cut(s)	176, 371
BsoBI	CYCGRG	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	5 cut(s)	53, 64, 162, 201, 462
Bsp1720I	GCTNAGC	1 cut(s)	333
Bsp19I	CCATGG	1 cut(s)	171
BspACI	CCGC	5 cut(s)	104, 168, 257, 287, 368
BspANI	GGCC	2 cut(s)	176, 371
BspCNI	CTCAG	2 cut(s)	346, 379
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	2 cut(s)	22, 43
BspPI	GGATC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	4 cut(s)	12, 158, 171, 188
BssMI	GATC	5 cut(s)	53, 64, 162, 201, 462
BssT1I	CCWWGG	2 cut(s)	171, 188
Bst2UI	CCWGG	2 cut(s)	160, 284
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	2 cut(s)	335, 459
BstBAI	YACGTR	2 cut(s)	26, 151
BstDEI	CTNAG	3 cut(s)	333, 387, 432
BstDSI	CCRYGG	2 cut(s)	12, 171
BstF5I	GGATG	3 cut(s)	10, 222, 397
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	2 cut(s)	385, 477
BstKTI	GATC	5 cut(s)	56, 67, 165, 204, 465
BstMBI	GATC	5 cut(s)	53, 64, 162, 201, 462
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	144, 173, 329
BstNI	CCWGG	2 cut(s)	160, 284
BstSCI	CCNGG	2 cut(s)	158, 282
BstSFI	CTRYAG	2 cut(s)	18, 39
BstV1I	GCAGC	2 cut(s)	4, 32
Bsu36I	CCTNAGG	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	176, 371
BtgI	CCRYGG	2 cut(s)	12, 171
BtsCI	GGATG	3 cut(s)	10, 222, 397
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	2 cut(s)	385, 477
Cfr10I	RCCGGY	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	361, 396
CviAII	CATG	4 cut(s)	88, 172, 466, 498
DdeI	CTNAG	3 cut(s)	333, 387, 432
DpnI	GATC	5 cut(s)	55, 66, 164, 203, 464
DpnII	GATC	5 cut(s)	53, 64, 162, 201, 462
EaeI	YGGCCR	2 cut(s)	174, 369
Eam1104I	CTCTTC	2 cut(s)	335, 459
EarI	CTCTTC	2 cut(s)	335, 459
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	171, 188
Eco24I	GRGCYC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	495
Eco72I	CACGTG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	158, 282
EcoT14I	CCWWGG	2 cut(s)	171, 188
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	171, 188
FaeI	CATG	4 cut(s)	91, 175, 469, 501
FaiI	YATR	7 cut(s)	89, 173, 420, 467, 499, 540, 562
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	4 cut(s)	87, 171, 465, 497
Fnu4HI	GCNGC	5 cut(s)	18, 21, 104, 168, 369
FokI	GGATG	3 cut(s)	17, 229, 404
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	5 cut(s)	18, 21, 104, 168, 369
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	2 cut(s)	384, 476
GluI	GCNGC	5 cut(s)	18, 21, 104, 168, 369
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	2 cut(s)	176, 371
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	2 cut(s)	385, 477
Hin1II	CATG	4 cut(s)	91, 175, 469, 501
Hin6I	GCGC	2 cut(s)	383, 475
HinP1I	GCGC	2 cut(s)	383, 475
HinfI	GANTC	2 cut(s)	81, 350
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	2 cut(s)	217, 301
Hpy188I	TCNGA	3 cut(s)	47, 58, 133
Hpy188III	TCNNGA	3 cut(s)	211, 458, 466
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	519
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	3 cut(s)	25, 75, 150
HpyCH4V	TGCA	3 cut(s)	20, 41, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	144, 173, 329
HpyF3I	CTNAG	3 cut(s)	333, 387, 432
HpySE526I	ACGT	3 cut(s)	25, 75, 150
Hsp92II	CATG	4 cut(s)	91, 175, 469, 501
HspAI	GCGC	2 cut(s)	383, 475
Kzo9I	GATC	5 cut(s)	53, 64, 162, 201, 462
LmnI	GCTCC	3 cut(s)	241, 309, 436
Lsp1109I	GCAGC	2 cut(s)	4, 32
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	3 cut(s)	25, 75, 150
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	5 cut(s)	55, 66, 164, 203, 464
MboI	GATC	5 cut(s)	53, 64, 162, 201, 462
MboII	GAAGA	2 cut(s)	352, 446
MfeI	CAATTG	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	4 cut(s)	292, 425, 484, 517
MmeI	TCCRAC	2 cut(s)	25, 111
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	160, 284
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	2 cut(s)	160, 284
MwoI	GCNNNNNNNGC	3 cut(s)	144, 173, 329
NcoI	CCATGG	1 cut(s)	171
NdeII	GATC	5 cut(s)	53, 64, 162, 201, 462
NlaIII	CATG	4 cut(s)	91, 175, 469, 501
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	465
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	81, 350
PkrI	GCNGC	5 cut(s)	19, 22, 105, 169, 370
Ple19I	CGATCG	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	2 cut(s)	26, 151
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	158, 282
PspCI	CACGTG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	2 cut(s)	158, 282
PspN4I	GGNNCC	1 cut(s)	10
PspXI	VCTCGAGB	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	22, 43
PvuI	CGATCG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	314
SatI	GCNGC	5 cut(s)	18, 21, 104, 168, 369
Sau3AI	GATC	5 cut(s)	53, 64, 162, 201, 462
ScrFI	CCNGG	2 cut(s)	160, 284
SduI	GDGCHC	1 cut(s)	314
SfcI	CTRYAG	2 cut(s)	18, 39
Sfr274I	CTCGAG	1 cut(s)	194
SlaI	CTCGAG	1 cut(s)	194
SmlI	CTYRAG	4 cut(s)	194, 209, 458, 478
SmoI	CTYRAG	4 cut(s)	194, 209, 458, 478
Sse9I	AATT	4 cut(s)	292, 425, 484, 517
SsiI	CCGC	5 cut(s)	104, 168, 257, 287, 368
SspMI	CTAG	1 cut(s)	260
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	158, 282
StyI	CCWWGG	2 cut(s)	171, 188
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	3 cut(s)	28, 78, 153
TaqI	TCGA	4 cut(s)	63, 195, 353, 570
TasI	AATT	4 cut(s)	292, 425, 484, 517
TauI	GCSGC	3 cut(s)	106, 170, 371
TfiI	GAWTC	2 cut(s)	81, 350
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	17, 20
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	4 cut(s)	73, 255, 510, 523
XapI	RAATTY	2 cut(s)	292, 484
XhoI	CTCGAG	1 cut(s)	194
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.