RchiOBHm_Chr7g0242311

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005204
Physical Location & Seq
Forward (+)
68441007 .. 68441381
375 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21718

Sequence Viewer

Length: 273 bp
ATGGACCTGCTGGTGCTGAAGATGTTGCTGTCAGTAGTGGCATCGATTTCGCTGCAGATTCACAGCGATTGCTTGCTTCAGATAGTGAGGACTTGCTATAATATCTATTTGGGGAGTAAGAATATATTGAATAAGACGAAGGGCGAGCGGTCAGTCCTCTCTCTCTTCCGATTTCACCTGCATTGCCCGGTCAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTCGAGAGTGCTTCTCTTCTTGAGATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

90

Amino Acids

10.65

Weight (kDa)

11.22

Isoelectric Point (pI)

72.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCB PF16213 2 - 46 5.4e-06 Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
Acc36I ACCTGC 2 cut(s) 15, 186
AccBSI CCGCTC 1 cut(s) 148
AciI CCGC 1 cut(s) 148
AcuI CTGAAG 2 cut(s) 38, 62
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw21I GWGCWC 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 39
BcgI CGANNNNNNTGC 4 cut(s) 30, 34, 64, 68
BcnI CCSGG 1 cut(s) 188
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 2 cut(s) 15, 186
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 188
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 240, 272
Bpu10I CCTNAGC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 188
Bsa29I ATCGAT 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 44
BseGI GGATG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 39
BshVI ATCGAT 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 1 cut(s) 148
BspDI ATCGAT 1 cut(s) 44
BspHI TCATGA 1 cut(s) 269
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 2 cut(s) 15, 186
BsrBI CCGCTC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 181
BssMI GATC 1 cut(s) 266
Bst6I CTCTTC 2 cut(s) 170, 263
BstC8I GCNNGC 2 cut(s) 74, 146
BstDEI CTNAG 1 cut(s) 236
BstF5I GGATG 1 cut(s) 201
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 201
BveI ACCTGC 2 cut(s) 15, 186
Cac8I GCNNGC 2 cut(s) 74, 146
CciI TCATGA 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 44
CviAII CATG 1 cut(s) 270
CviJI RGCY 2 cut(s) 235, 243
CviKI_1 RGCY 2 cut(s) 235, 243
DdeI CTNAG 1 cut(s) 236
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 170, 263
EarI CTCTTC 2 cut(s) 170, 263
Ecl136II GAGCTC 1 cut(s) 243
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 4
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 38, 62
Eco88I CYCGRG 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 1 cut(s) 273
FaiI YATR 4 cut(s) 99, 125, 224, 271
FatI CATG 1 cut(s) 269
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 208
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 53
GluI GCNGC 1 cut(s) 53
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 273
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 188
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 81, 170
Hpy188III TCNNGA 4 cut(s) 193, 246, 262, 270
HpyAV CCTTC 1 cut(s) 133
HpyCH4V TGCA 2 cut(s) 55, 181
HpyF3I CTNAG 1 cut(s) 236
Hsp92II CATG 1 cut(s) 273
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 4 cut(s) 20, 178, 191, 201
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 50
MalI GATC 1 cut(s) 268
MbiI CCGCTC 1 cut(s) 148
MboI GATC 1 cut(s) 266
MboII GAAGA 3 cut(s) 31, 157, 250
MfeI CAATTG 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 229
MnlI CCTC 4 cut(s) 81, 167, 204, 210
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 229
NciI CCSGG 1 cut(s) 188
NdeII GATC 1 cut(s) 266
NlaIII CATG 1 cut(s) 273
PaeR7I CTCGAG 1 cut(s) 244
PagI TCATGA 1 cut(s) 269
PaqCI CACCTGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 57
SacI GAGCTC 1 cut(s) 245
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 245
SetI ASST 3 cut(s) 9, 180, 245
SfaNI GCATC 1 cut(s) 50
SfcI CTRYAG 1 cut(s) 53
Sfr274I CTCGAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 244
SmlI CTYRAG 2 cut(s) 244, 262
SmoI CTYRAG 2 cut(s) 244, 262
Sse9I AATT 1 cut(s) 229
SsiI CCGC 1 cut(s) 148
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 186
TaqI TCGA 2 cut(s) 44, 245
TasI AATT 1 cut(s) 229
TfiI GAWTC 1 cut(s) 58
TseI GCWGC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 4
XhoI CTCGAG 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.