Rh7AG347900

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005204
Physical Location & Seq
Reverse (-)
44094356 .. 44094724
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG347900.1

Sequence Viewer

Length: 369 bp
ATGCCACTGACCAAAATCTCTCTGTTTGCTCTCCGCCGTTTTACCCGTTGGATCCTAATCCAAGTCAGACCCATCGAATCCCTGACCCGACTCGCCTTTGCAAAATGGACGGAACTGCGGCTGCAGCACGTGTTCTCGTTTCTACAGTCGGACGGCGATCGGAACTCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAGGATATTAGTCGGGAACTGCTACGCTGCGTGCCCTAGGATTTTGATCAGTCGGTTCCCAGACGTTAGATTCATCACGCTCAAAGGGAAGCCACACTTCGCCGACTTCAATCTGGTGTCAGAGGGCTGGGGTGGCTACGTGTATCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

122

Amino Acids

14.45

Weight (kDa)

10.12

Isoelectric Point (pI)

69.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 41 - 73 6.8e-15 F-box
Transp_inhibit PF18791 93 - 122 7.5e-14 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AciI CCGC 3 cut(s) 34, 118, 205
AclWI GGATC 2 cut(s) 46, 59
AcvI CACGTG 1 cut(s) 130
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 2 cut(s) 129, 357
AgsI TTSAA 1 cut(s) 328
AlwI GGATC 2 cut(s) 46, 59
ApeKI GCWGC 3 cut(s) 121, 124, 245
AspA2I CCTAGG 1 cut(s) 254
AvrII CCTAGG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 254
BamHI GGATCC 1 cut(s) 51
BbrPI CACGTG 1 cut(s) 130
BbvI GCAGC 3 cut(s) 108, 136, 232
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 21, 169
BclI TGATCA 1 cut(s) 264
BfaI CTAG 2 cut(s) 255, 367
BfmI CTRYAG 2 cut(s) 122, 143
BisI GCNGC 4 cut(s) 119, 122, 125, 246
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 4 cut(s) 120, 123, 126, 247
BmiI GGNNCC 2 cut(s) 53, 275
BsaAI YACGTR 2 cut(s) 130, 358
BsaBI GATNNNNATC 2 cut(s) 56, 263
BsaJI CCNNGG 1 cut(s) 254
Bse8I GATNNNNATC 2 cut(s) 56, 263
BseDI CCNNGG 1 cut(s) 254
BseJI GATNNNNATC 2 cut(s) 56, 263
BseRI GAGGAG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 3 cut(s) 108, 136, 232
BseYI CCCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 232
Bsh1285I CGRYCG 1 cut(s) 160
BsiEI CGRYCG 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 5 cut(s) 51, 157, 168, 198, 264
BspACI CCGC 3 cut(s) 34, 118, 205
BspLI GGNNCC 2 cut(s) 53, 275
BspMAI CTGCAG 1 cut(s) 126
BspPI GGATC 2 cut(s) 46, 59
BsrBI CCGCTC 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 5 cut(s) 51, 157, 168, 198, 264
BssT1I CCWWGG 1 cut(s) 254
Bst4CI ACNGT 1 cut(s) 147
BstBAI YACGTR 2 cut(s) 130, 358
BstC8I GCNNGC 1 cut(s) 250
BstKTI GATC 5 cut(s) 54, 160, 171, 201, 267
BstMBI GATC 5 cut(s) 51, 157, 168, 198, 264
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 2 cut(s) 124, 351
BstSFI CTRYAG 2 cut(s) 122, 143
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 3 cut(s) 108, 136, 232
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 4 cut(s) 121, 310, 345, 354
CviKI_1 RGCY 4 cut(s) 121, 310, 345, 354
CviQI GTAC 1 cut(s) 193
DpnI GATC 5 cut(s) 53, 159, 170, 200, 266
DpnII GATC 5 cut(s) 51, 157, 168, 198, 264
EciI GGCGGA 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 254
Eco72I CACGTG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 119, 122, 125, 246
Fsp4HI GCNGC 4 cut(s) 119, 122, 125, 246
FspBI CTAG 2 cut(s) 255, 367
GluI GCNGC 4 cut(s) 119, 122, 125, 246
GsaI CCCAGC 1 cut(s) 349
HinfI GANTC 3 cut(s) 77, 90, 288
Hpy188I TCNGA 4 cut(s) 68, 151, 162, 340
Hpy188III TCNNGA 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 3 cut(s) 129, 282, 357
HpyCH4V TGCA 4 cut(s) 101, 124, 183, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 351
HpySE526I ACGT 3 cut(s) 129, 282, 357
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 5 cut(s) 51, 157, 168, 198, 264
LpnPI CCDG 6 cut(s) 95, 161, 199, 291, 317, 331
Lsp1109I GCAGC 3 cut(s) 108, 136, 232
MaeI CTAG 2 cut(s) 255, 367
MaeII ACGT 3 cut(s) 129, 282, 357
MalI GATC 5 cut(s) 53, 159, 170, 200, 266
MbiI CCGCTC 1 cut(s) 205
MboI GATC 5 cut(s) 51, 157, 168, 198, 264
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 254
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 29, 129
MnlI CCTC 3 cut(s) 210, 213, 334
MwoI GCNNNNNNNGC 2 cut(s) 124, 351
NdeII GATC 5 cut(s) 51, 157, 168, 198, 264
NlaIV GGNNCC 2 cut(s) 53, 275
PfeI GAWTC 2 cut(s) 77, 288
PkrI GCNGC 4 cut(s) 120, 123, 126, 247
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 84
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 1 cut(s) 84
Ppu21I YACGTR 2 cut(s) 130, 358
PspCI CACGTG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 345
PspN4I GGNNCC 2 cut(s) 53, 275
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 51
PvuI CGATCG 1 cut(s) 160
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SatI GCNGC 4 cut(s) 119, 122, 125, 246
Sau3AI GATC 5 cut(s) 51, 157, 168, 198, 264
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 254
SetI ASST 3 cut(s) 132, 285, 360
SfcI CTRYAG 2 cut(s) 122, 143
SsiI CCGC 3 cut(s) 34, 118, 205
SspMI CTAG 2 cut(s) 255, 367
StyI CCWWGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 3 cut(s) 132, 285, 360
TaqI TCGA 3 cut(s) 75, 167, 201
TauI GCSGC 1 cut(s) 121
TfiI GAWTC 2 cut(s) 77, 288
TscAI CASTG 1 cut(s) 12
TseI GCWGC 3 cut(s) 121, 124, 245
TspDTI ATGAA 1 cut(s) 280
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 12
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 2 cut(s) 255, 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.