RchiOBHm_Chr3g0474641

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005204
Physical Location & Seq
Forward (+)
20380562 .. 20380908
347 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44024

Sequence Viewer

Length: 288 bp
ATGGAGCTGCTGGTGCTGAAGACGTTGCTGTCAACAGTGCCATCGATTTCGCTACAGATTCATGGCGATTGCTTGCTTCAGATAGTGAGGACTTGCTATAATATCTATTTGGGGAGTAAGAATATATTGAATCAAATGACGGGCGAGCTGTCAGTCCTCTCTCTCTTCCGATTTCACCTGCATTGCCCCGTTGTTGTGTTAGTGTTTTGTGCTATGGGCTTGGCTATGTTGGATGTTAATTTTGATGAGGAGGTGTATTTGAATGTGCTTGCATTTTGCATCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

95

Amino Acids

10.75

Weight (kDa)

5.36

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCB PF16213 2 - 48 7.5e-07 Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 186
AasI GACNNNNNNGTC 1 cut(s) 28
Acc36I ACCTGC 1 cut(s) 186
AcuI CTGAAG 2 cut(s) 38, 62
AgsI TTSAA 2 cut(s) 130, 262
AluBI AGCT 2 cut(s) 7, 148
AluI AGCT 2 cut(s) 7, 148
ApeKI GCWGC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 26
BccI CCATC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 186
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 44
BseGI GGATG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 263
BshVI ATCGAT 1 cut(s) 44
BspDI ATCGAT 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 74, 146, 270
BstF5I GGATG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 26
Bsu15I ATCGAT 1 cut(s) 44
BsuTUI ATCGAT 1 cut(s) 44
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 42
BveI ACCTGC 1 cut(s) 186
Cac8I GCNNGC 3 cut(s) 74, 146, 270
ClaI ATCGAT 1 cut(s) 44
CviAII CATG 1 cut(s) 62
CviJI RGCY 4 cut(s) 7, 148, 219, 224
CviKI_1 RGCY 4 cut(s) 7, 148, 219, 224
DrdI GACNNNNNNGTC 1 cut(s) 28
DseDI GACNNNNNNGTC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco57I CTGAAG 2 cut(s) 38, 62
FaeI CATG 1 cut(s) 65
FaiI YATR 5 cut(s) 63, 99, 125, 215, 227
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 8
GluI GCNGC 1 cut(s) 8
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 58, 130
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 81, 170
Hpy8I GTNNAC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 3 cut(s) 181, 272, 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 23
Hsp92II CATG 1 cut(s) 65
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 191, 268
MaeII ACGT 1 cut(s) 23
MboII GAAGA 2 cut(s) 31, 157
MluCI AATT 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 4 cut(s) 81, 167, 241, 244
MseI TTAA 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 13
NlaIII CATG 1 cut(s) 65
PaqCI CACCTGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 58, 130
PkrI GCNGC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 8
SetI ASST 5 cut(s) 9, 26, 150, 180, 255
SfcI CTRYAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 238
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 44
TasI AATT 1 cut(s) 238
TfiI GAWTC 2 cut(s) 58, 130
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 1 cut(s) 42
TseI GCWGC 1 cut(s) 7
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.