Rroxscaffold_1G00038170

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005204
Physical Location & Seq
Forward (+)
55614200 .. 55615093
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038170.1

Sequence Viewer

Length: 333 bp
ATGCGCCTCCAAGCCGGCCCGCTCCACGACGAAGGCTCCGATCGGTACTTCCTCGCCGACGTCGAGTCGATTCTCGGCCTTATCATCGGCGCCGCCGCATCGGGAGTGGTGAAGATCACCGATCCGGCCGTCGATTGCATCCAAAAGCTAATCGCGCATGGCTACCGCGCGGCGAAGCAAAAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATCATGACAAGGCGCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCGGGTGAAGTAGTGGAGTGTGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

110

Amino Acids

11.94

Weight (kDa)

4.85

Isoelectric Point (pI)

29.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccB1I GGYRCC 1 cut(s) 89
AccBSI CCGCTC 1 cut(s) 22
AccII CGCG 3 cut(s) 155, 168, 170
AciI CCGC 5 cut(s) 20, 93, 96, 166, 170
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 277
AcyI GRCGYC 2 cut(s) 60, 90
AfaI GTAC 1 cut(s) 47
AhdI GACNNNNNGTC 1 cut(s) 64
AluBI AGCT 2 cut(s) 148, 232
AluI AGCT 2 cut(s) 148, 232
AlwI GGATC 1 cut(s) 116
AoxI GGCC 3 cut(s) 16, 76, 126
ApoI RAATTY 1 cut(s) 277
AspLEI GCGC 5 cut(s) 6, 92, 157, 170, 270
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 109, 121, 320
BanI GGYRCC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 113
BfoI RGCGCY 2 cut(s) 93, 271
BisI GCNGC 3 cut(s) 93, 96, 171
BlsI GCNGC 3 cut(s) 94, 97, 172
BmeRI GACNNNNNGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 37, 91
BmsI GCATC 2 cut(s) 107, 147
BplI GAGNNNNNCTC 2 cut(s) 229, 261
Bpu10I CCTNAGC 1 cut(s) 225
BpuEI CTTGAG 3 cut(s) 254, 272, 292
BsaHI GRCGYC 2 cut(s) 60, 90
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bse118I RCCGGY 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 290
BseGI GGATG 2 cut(s) 138, 190
BseMI GCAATG 1 cut(s) 290
BseX3I CGGCCG 1 cut(s) 126
Bsh1236I CGCG 3 cut(s) 155, 168, 170
Bsh1285I CGRYCG 2 cut(s) 43, 129
BshFI GGCC 3 cut(s) 18, 78, 128
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 2 cut(s) 43, 129
BsiSI CCGG 2 cut(s) 15, 125
BsnI GGCC 3 cut(s) 18, 78, 128
Bsp143I GATC 4 cut(s) 40, 114, 121, 255
BspACI CCGC 5 cut(s) 20, 93, 96, 166, 170
BspANI GGCC 3 cut(s) 18, 78, 128
BspFNI CGCG 3 cut(s) 155, 168, 170
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 37, 91
BspPI GGATC 1 cut(s) 116
BspT107I GGYRCC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssMI GATC 4 cut(s) 40, 114, 121, 255
BssNI GRCGYC 2 cut(s) 60, 90
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 2 cut(s) 60, 90
BstC8I GCNNGC 2 cut(s) 16, 20
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 2 cut(s) 138, 190
BstFNI CGCG 3 cut(s) 155, 168, 170
BstH2I RGCGCY 2 cut(s) 93, 271
BstHHI GCGC 5 cut(s) 6, 92, 157, 170, 270
BstKTI GATC 4 cut(s) 43, 117, 124, 258
BstMBI GATC 4 cut(s) 40, 114, 121, 255
BstMCI CGRYCG 2 cut(s) 43, 129
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 331
BstUI CGCG 3 cut(s) 155, 168, 170
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 3 cut(s) 18, 78, 128
BtsCI GGATG 2 cut(s) 138, 190
Cac8I GCNNGC 2 cut(s) 16, 20
CciI TCATGA 1 cut(s) 258
CfoI GCGC 5 cut(s) 6, 92, 157, 170, 270
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 46
CviAII CATG 3 cut(s) 158, 259, 328
CviJI RGCY 9 cut(s) 14, 18, 36, 78, 128, 148, 162, 224, 232
CviKI_1 RGCY 9 cut(s) 14, 18, 36, 78, 128, 148, 162, 224, 232
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 1 cut(s) 225
DinI GGCGCC 1 cut(s) 91
DpnI GATC 4 cut(s) 42, 116, 123, 257
DpnII GATC 4 cut(s) 40, 114, 121, 255
DriI GACNNNNNGTC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 252
Eam1105I GACNNNNNGTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 252
EclXI CGGCCG 1 cut(s) 126
Eco52I CGGCCG 1 cut(s) 126
EgeI GGCGCC 1 cut(s) 91
EheI GGCGCC 1 cut(s) 91
FaeI CATG 3 cut(s) 161, 262, 331
FaiI YATR 4 cut(s) 159, 213, 260, 329
FatI CATG 3 cut(s) 157, 258, 327
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 3 cut(s) 93, 96, 171
FokI GGATG 2 cut(s) 125, 197
Fsp4HI GCNGC 3 cut(s) 93, 96, 171
GlaI GCGC 5 cut(s) 5, 91, 156, 169, 269
GluI GCNGC 3 cut(s) 93, 96, 171
HaeII RGCGCY 2 cut(s) 93, 271
HaeIII GGCC 3 cut(s) 18, 78, 128
HapII CCGG 2 cut(s) 15, 125
HhaI GCGC 5 cut(s) 6, 92, 157, 170, 270
Hin1I GRCGYC 2 cut(s) 60, 90
Hin1II CATG 3 cut(s) 161, 262, 331
Hin6I GCGC 5 cut(s) 4, 90, 155, 168, 268
HinP1I GCGC 5 cut(s) 4, 90, 155, 168, 268
HinfI GANTC 2 cut(s) 65, 70
HpaII CCGG 2 cut(s) 15, 125
HphI GGTGA 3 cut(s) 109, 121, 320
Hpy188I TCNGA 1 cut(s) 40
Hpy188III TCNNGA 3 cut(s) 102, 251, 259
Hpy99I CGWCG 4 cut(s) 32, 62, 65, 134
HpyAV CCTTC 2 cut(s) 26, 312
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 2 cut(s) 60, 90
Hsp92II CATG 3 cut(s) 161, 262, 331
HspAI GCGC 5 cut(s) 4, 90, 155, 168, 268
KasI GGCGCC 1 cut(s) 89
KroI GCCGGC 1 cut(s) 14
KroNI GCCGGC 1 cut(s) 16
Kzo9I GATC 4 cut(s) 40, 114, 121, 255
LmnI GCTCC 3 cut(s) 27, 41, 229
LpnPI CCDG 2 cut(s) 28, 138
LweI GCATC 2 cut(s) 107, 147
MaeII ACGT 1 cut(s) 60
MalI GATC 4 cut(s) 42, 116, 123, 257
MbiI CCGCTC 1 cut(s) 22
MboI GATC 4 cut(s) 40, 114, 121, 255
MboII GAAGA 2 cut(s) 124, 239
MfeI CAATTG 1 cut(s) 218
MluCI AATT 2 cut(s) 218, 277
Mly113I GGCGCC 1 cut(s) 90
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 4 cut(s) 17, 62, 193, 199
MroNI GCCGGC 1 cut(s) 14
MspI CCGG 2 cut(s) 15, 125
MunI CAATTG 1 cut(s) 218
MvnI CGCG 3 cut(s) 155, 168, 170
MwoI GCNNNNNNNGC 1 cut(s) 154
NaeI GCCGGC 1 cut(s) 16
NarI GGCGCC 1 cut(s) 90
NdeII GATC 4 cut(s) 40, 114, 121, 255
NgoMIV GCCGGC 1 cut(s) 14
NlaIII CATG 3 cut(s) 161, 262, 331
NlaIV GGNNCC 2 cut(s) 37, 91
NmeAIII GCCGAG 1 cut(s) 54
NspI RCATGY 1 cut(s) 331
PagI TCATGA 1 cut(s) 258
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 60
PdiI GCCGGC 1 cut(s) 16
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 3 cut(s) 94, 97, 172
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 37, 91
PspPI GGNCC 1 cut(s) 17
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SatI GCNGC 3 cut(s) 93, 96, 171
Sau3AI GATC 4 cut(s) 40, 114, 121, 255
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 1 cut(s) 74
SetI ASST 3 cut(s) 63, 150, 234
SfaNI GCATC 2 cut(s) 107, 147
SfoI GGCGCC 1 cut(s) 91
SmlI CTYRAG 3 cut(s) 233, 251, 271
SmoI CTYRAG 3 cut(s) 233, 251, 271
Sse9I AATT 2 cut(s) 218, 277
SsiI CCGC 5 cut(s) 20, 93, 96, 166, 170
SspDI GGCGCC 1 cut(s) 89
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 63, 68, 132
TasI AATT 2 cut(s) 218, 277
TauI GCSGC 3 cut(s) 95, 98, 173
TfiI GAWTC 1 cut(s) 70
XapI RAATTY 1 cut(s) 277
XceI RCATGY 1 cut(s) 331
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.