Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Reverse (-)

45495088 .. 45501358

Gene Structure 6271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGACGGAACTGCGGCTGCAGCACGTGTTCTCGTTTCTACAGTCGGACGGCGATCGGAACTCGATCTCGCTGACGTTAGATTCATCACGCTCAAAGGGAAGCCACACTTCGCCGACTTCAATCTGGTGTCAGAGGGCTGGGCTCCGCTAGGTTCATTTCGTGTGCCGAACCAGGCGGTGACGTTTTCGCAGAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCGAAGAGGAGAGATTCGATTGTGCCACTTGCGGCCACGATTGTTGCGCCTGAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATCATGACAAGGCGCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCAGATTATCAATTTCTCAGAACTTACTATGGAGAAGCTAAGGGAGGAGATGTGGAGCGGAGGGGCGAAGAAGCTGAAGCAGCTGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

163

Amino Acids

17.9

Weight (kDa)

5.33

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transp_inhibit	PF18791	25 - 47	3.1e-09	Transport inhibitor response 1 protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	457
AciI	CCGC	5 cut(s)	14, 146, 176, 257, 457
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	384
AcvI	CACGTG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	5 cut(s)	201, 328, 437, 473, 482
AluI	AGCT	5 cut(s)	201, 328, 437, 473, 482
Alw21I	GWGCWC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	4 cut(s)	17, 20, 479, 482
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	2 cut(s)	274, 366
AsuHPI	GGTGA	2 cut(s)	190, 217
AxyI	CCTNAGG	1 cut(s)	276
BanII	GRGCYC	2 cut(s)	145, 203
BbrPI	CACGTG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	203
BbvI	GCAGC	3 cut(s)	4, 32, 469
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	173
BfaI	CTAG	1 cut(s)	149
BfmI	CTRYAG	2 cut(s)	18, 39
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	6 cut(s)	15, 18, 21, 258, 480, 483
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	6 cut(s)	16, 19, 22, 259, 481, 484
Bme1390I	CCNGG	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	173
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu10I	CCTNAGC	2 cut(s)	321, 438
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	3 cut(s)	350, 368, 388
BsaAI	YACGTR	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	435, 465
Bse118I	RCCGGY	1 cut(s)	485
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	3 cut(s)	236, 267, 430
BseRI	GAGGAG	2 cut(s)	247, 459
BseXI	GCAGC	3 cut(s)	4, 32, 469
BseYI	CCCAGC	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	145, 203
Bsp143I	GATC	3 cut(s)	53, 64, 351
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	5 cut(s)	14, 146, 176, 257, 457
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	3 cut(s)	235, 268, 429
BspHI	TCATGA	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	22
BsrBI	CCGCTC	1 cut(s)	457
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	485
BssAI	RCCGGY	1 cut(s)	485
BssMI	GATC	3 cut(s)	53, 64, 351
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	224, 348
BstBAI	YACGTR	1 cut(s)	26
BstDEI	CTNAG	5 cut(s)	222, 276, 321, 416, 438
BstF5I	GGATG	1 cut(s)	286
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	274, 366
BstKTI	GATC	3 cut(s)	56, 67, 354
BstMBI	GATC	3 cut(s)	53, 64, 351
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 218, 479
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	2 cut(s)	18, 39
BstV1I	GCAGC	3 cut(s)	4, 32, 469
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	286
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	2 cut(s)	274, 366
Cfr10I	RCCGGY	1 cut(s)	485
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	1 cut(s)	355
DdeI	CTNAG	5 cut(s)	222, 276, 321, 416, 438
DpnI	GATC	3 cut(s)	55, 66, 353
DpnII	GATC	3 cut(s)	53, 64, 351
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	224, 348
EarI	CTCTTC	2 cut(s)	224, 348
Ecl136II	GAGCTC	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	145, 203
Eco53kI	GAGCTC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	384
Eco72I	CACGTG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	145, 203
FaeI	CATG	1 cut(s)	358
FaiI	YATR	3 cut(s)	309, 356, 429
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	354
Fnu4HI	GCNGC	6 cut(s)	15, 18, 21, 258, 480, 483
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	145, 203
Fsp4HI	GCNGC	6 cut(s)	15, 18, 21, 258, 480, 483
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	2 cut(s)	273, 365
GluI	GCNGC	6 cut(s)	15, 18, 21, 258, 480, 483
GsaI	CCCAGC	1 cut(s)	142
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	1 cut(s)	486
HhaI	GCGC	2 cut(s)	274, 366
Hin1II	CATG	1 cut(s)	358
Hin6I	GCGC	2 cut(s)	272, 364
HinP1I	GCGC	2 cut(s)	272, 364
HinfI	GANTC	2 cut(s)	81, 239
HpaII	CCGG	1 cut(s)	486
HphI	GGTGA	2 cut(s)	190, 217
Hpy188I	TCNGA	5 cut(s)	47, 58, 133, 403, 419
Hpy188III	TCNNGA	2 cut(s)	347, 355
HpyAV	CCTTC	2 cut(s)	202, 408
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	3 cut(s)	25, 75, 182
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 218, 479
HpyF3I	CTNAG	5 cut(s)	222, 276, 321, 416, 438
HpySE526I	ACGT	3 cut(s)	25, 75, 182
Hsp92II	CATG	1 cut(s)	358
HspAI	GCGC	2 cut(s)	272, 364
Kzo9I	GATC	3 cut(s)	53, 64, 351
LmnI	GCTCC	4 cut(s)	148, 198, 325, 454
LpnPI	CCDG	5 cut(s)	110, 124, 158, 185, 288
Lsp1109I	GCAGC	3 cut(s)	4, 32, 469
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	3 cut(s)	25, 75, 182
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	3 cut(s)	55, 66, 353
MbiI	CCGCTC	1 cut(s)	457
MboI	GATC	3 cut(s)	53, 64, 351
MboII	GAAGA	3 cut(s)	241, 335, 479
MfeI	CAATTG	1 cut(s)	314
MhlI	GDGCHC	2 cut(s)	145, 203
MluCI	AATT	3 cut(s)	314, 373, 410
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	127, 186, 225, 271, 289, 295, 437, 453
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	486
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	3 cut(s)	20, 218, 479
NdeII	GATC	3 cut(s)	53, 64, 351
NlaIII	CATG	1 cut(s)	358
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	354
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	81, 239
PkrI	GCNGC	6 cut(s)	16, 19, 22, 259, 481, 484
Ple19I	CGATCG	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	171
PspCI	CACGTG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	22
PvuI	CGATCG	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	482
SacI	GAGCTC	1 cut(s)	203
SatI	GCNGC	6 cut(s)	15, 18, 21, 258, 480, 483
Sau3AI	GATC	3 cut(s)	53, 64, 351
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	2 cut(s)	145, 203
SfcI	CTRYAG	2 cut(s)	18, 39
SmlI	CTYRAG	3 cut(s)	329, 347, 367
SmoI	CTYRAG	3 cut(s)	329, 347, 367
Sse9I	AATT	3 cut(s)	314, 373, 410
SsiI	CCGC	5 cut(s)	14, 146, 176, 257, 457
SspMI	CTAG	1 cut(s)	149
SstI	GAGCTC	1 cut(s)	203
StyD4I	CCNGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	3 cut(s)	28, 78, 185
TaqI	TCGA	2 cut(s)	63, 242
TasI	AATT	3 cut(s)	314, 373, 410
TauI	GCSGC	2 cut(s)	17, 260
TfiI	GAWTC	2 cut(s)	81, 239
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	17, 20, 479, 482
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	73, 144
TspGWI	ACGGA	1 cut(s)	21
XapI	RAATTY	1 cut(s)	373
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.