RLG00000013371

Brefeldin A-inhibited guanine nucleotide-exchange protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005204
Physical Location & Seq
Reverse (-)
30459838 .. 30461872
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013371

Sequence Viewer

Length: 537 bp
ATGTCACAGCGTGAATACCTCCGGAGGCCCGTGTTCGGTGAGTTTGTGAGGGCGCGTCACCGAACATCTCAGCCTGAACCAACCCGGCCCGCCCACGACGAAGGCTCTGGTCAGTACTCCCTCACCGACGCCGAGTCGATTCTCAGACCTATCATCAGCGCCGCAGCATCGAGAGTGGTGAAGATCACCGATCCTGCTGTTGATTGCATCCAAAAGCTAATCGTGCATGGCTACCTGCGCGGCGAAGCGAAGTTGCTAACAAAATTAATCGAGTCCATTTGTAAATGCCACAATTTGGAGGACGATCAGATGGAGCTGCTGGTGTTGAAGATGTTGCTGTCAGCAGTGACATCGATTTCGTTGCCGATTCACGGCGATTGCTTGCTTCAAATAGTGAGGACTTGCTATAATATCTATTTGGGAAGTAAGAATATATTGAATCAGAAGACGGCCGAGCGGTCAGTCCTCTCTCTCTTCCTATTTCACCTGCATTGCCTCGTCGTTTACTTGCTTAGTACTTCTTGTCCTGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0001817 GO:0001819 GO:0001881 GO:0003674 GO:0005085 GO:0005086 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005815 GO:0005829 GO:0005856 GO:0005874 GO:0005879 GO:0005881 GO:0005929 GO:0005930 GO:0006810 GO:0006887 GO:0006892 GO:0006893 GO:0006996 GO:0007032 GO:0007154 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009553 GO:0009561 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015630 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019899 GO:0023051 GO:0023052 GO:0030425 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032279 GO:0032280 GO:0032501 GO:0032502 GO:0032588 GO:0032680 GO:0032760 GO:0032838 GO:0032940 GO:0033036 GO:0034237 GO:0034613 GO:0035556 GO:0036477 GO:0042886 GO:0042995 GO:0043001 GO:0043005 GO:0043112 GO:0043170 GO:0043197 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044260 GO:0044309 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044441 GO:0044444 GO:0044446 GO:0044447 GO:0044456 GO:0044463 GO:0044464 GO:0045184 GO:0045202 GO:0046903 GO:0048193 GO:0048229 GO:0048518 GO:0048856 GO:0050789 GO:0050794 GO:0050811 GO:0050896 GO:0051018 GO:0051020 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0051641 GO:0051716 GO:0055037 GO:0061951 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072657 GO:0072659 GO:0090150 GO:0097014 GO:0097447 GO:0097458 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098794 GO:0098876 GO:0098984 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0120025 GO:0120038 GO:1903555 GO:1903557 GO:1990778
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
DCB DUF1981 Mon2_C Sec7 Sec7_N

Protein Analysis

179

Amino Acids

20.01

Weight (kDa)

8.48

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DCB PF16213 38 - 155 2.6e-25 Mon2/Sec7/BIG1-like, dimerisation and cyclophilin-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 495
Acc36I ACCTGC 2 cut(s) 243, 495
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 457
AccII CGCG 2 cut(s) 55, 240
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 4 cut(s) 90, 162, 240, 457
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 2 cut(s) 116, 517
AfiI CCNNNNNNNGG 3 cut(s) 35, 295, 371
AgsI TTSAA 3 cut(s) 328, 389, 439
AhdI GACNNNNNGTC 1 cut(s) 133
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 2 cut(s) 217, 316
AluI AGCT 2 cut(s) 217, 316
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 3 cut(s) 26, 86, 450
ApeKI GCWGC 2 cut(s) 164, 316
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AseI ATTAAT 1 cut(s) 266
AspLEI GCGC 3 cut(s) 55, 161, 240
AspS9I GGNCC 2 cut(s) 27, 87
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 6 cut(s) 50, 50, 115, 178, 190, 476
BbsI GAAGAC 1 cut(s) 452
BbvI GCAGC 2 cut(s) 176, 303
BccI CCATC 1 cut(s) 304
BceAI ACGGC 2 cut(s) 388, 465
BcgI CGANNNNNNTGC 4 cut(s) 333, 343, 367, 377
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 162
BfuAI ACCTGC 2 cut(s) 243, 495
BisI GCNGC 4 cut(s) 162, 165, 241, 317
BlsI GCNGC 4 cut(s) 163, 166, 242, 318
BmcAI AGTACT 2 cut(s) 116, 517
Bme1390I CCNGG 2 cut(s) 85, 528
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 27, 87
BmrFI CCNGG 2 cut(s) 85, 528
BmsI GCATC 2 cut(s) 176, 216
BpiI GAAGAC 1 cut(s) 452
BpuMI CCSGG 1 cut(s) 85
Bsa29I ATCGAT 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 295, 371
Bse3DI GCAATG 1 cut(s) 490
BseAI TCCGGA 1 cut(s) 21
BseBI CCWGG 1 cut(s) 528
BseCI ATCGAT 1 cut(s) 353
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 35, 295, 371
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 2 cut(s) 83, 157
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 2 cut(s) 176, 303
Bsh1236I CGCG 2 cut(s) 55, 240
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 3 cut(s) 28, 88, 452
BshVI ATCGAT 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 453
BsiSI CCGG 2 cut(s) 22, 85
BslI CCNNNNNNNGG 3 cut(s) 35, 295, 371
BsnI GGCC 3 cut(s) 28, 88, 452
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 3 cut(s) 183, 190, 304
BspACI CCGC 4 cut(s) 90, 162, 240, 457
BspANI GGCC 3 cut(s) 28, 88, 452
BspCNI CTCAG 2 cut(s) 82, 156
BspDI ATCGAT 1 cut(s) 353
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 2 cut(s) 55, 240
BspMI ACCTGC 2 cut(s) 243, 495
BspPI GGATC 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 490
BssMI GATC 3 cut(s) 183, 190, 304
BssNI GRCGYC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 90, 383
BstDEI CTNAG 3 cut(s) 69, 143, 512
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 2 cut(s) 55, 240
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 3 cut(s) 55, 161, 240
BstKTI GATC 3 cut(s) 186, 193, 307
BstMBI GATC 3 cut(s) 183, 190, 304
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 2 cut(s) 223, 237
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 2 cut(s) 83, 526
BstUI CGCG 2 cut(s) 55, 240
BstV1I GCAGC 2 cut(s) 176, 303
BstV2I GAAGAC 1 cut(s) 452
BstZI CGGCCG 1 cut(s) 450
Bsu15I ATCGAT 1 cut(s) 353
BsuRI GGCC 3 cut(s) 28, 88, 452
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 1 cut(s) 207
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
BveI ACCTGC 2 cut(s) 243, 495
Cac8I GCNNGC 2 cut(s) 90, 383
CfoI GCGC 3 cut(s) 55, 161, 240
Cfr13I GGNCC 2 cut(s) 27, 87
ClaI ATCGAT 1 cut(s) 353
CseI GACGC 2 cut(s) 44, 137
Csp6I GTAC 2 cut(s) 115, 516
CviAII CATG 1 cut(s) 227
CviJI RGCY 8 cut(s) 28, 73, 88, 105, 217, 231, 316, 452
CviKI_1 RGCY 8 cut(s) 28, 73, 88, 105, 217, 231, 316, 452
CviQI GTAC 2 cut(s) 115, 516
DdeI CTNAG 3 cut(s) 69, 143, 512
DpnI GATC 3 cut(s) 185, 192, 306
DpnII GATC 3 cut(s) 183, 190, 304
DraIII CACNNNGTG 1 cut(s) 11
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 450
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 479
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 479
EclXI CGGCCG 1 cut(s) 450
Eco52I CGGCCG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 526
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 228, 408, 434
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 162, 165, 241, 317
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 4 cut(s) 162, 165, 241, 317
GlaI GCGC 3 cut(s) 54, 160, 239
GluI GCNGC 4 cut(s) 162, 165, 241, 317
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 3 cut(s) 28, 88, 452
HapII CCGG 2 cut(s) 22, 85
HgaI GACGC 2 cut(s) 44, 137
HhaI GCGC 3 cut(s) 55, 161, 240
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 3 cut(s) 53, 159, 238
HinP1I GCGC 3 cut(s) 53, 159, 238
HinfI GANTC 5 cut(s) 134, 139, 272, 367, 439
HpaII CCGG 2 cut(s) 22, 85
HphI GGTGA 6 cut(s) 50, 50, 115, 178, 190, 476
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 3 cut(s) 146, 309, 444
Hpy188III TCNNGA 2 cut(s) 22, 171
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 3 cut(s) 101, 131, 503
HpyAV CCTTC 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 207, 226, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 237
HpyF3I CTNAG 3 cut(s) 69, 143, 512
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 3 cut(s) 53, 159, 238
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 3 cut(s) 183, 190, 304
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 9 cut(s) 35, 87, 93, 98, 207, 248, 305, 500, 513
Lsp1109I GCAGC 2 cut(s) 176, 303
LweI GCATC 2 cut(s) 176, 216
MaeIII GTNAC 3 cut(s) 3, 56, 346
MalI GATC 3 cut(s) 185, 192, 306
MbiI CCGCTC 1 cut(s) 457
MboI GATC 3 cut(s) 183, 190, 304
MboII GAAGA 4 cut(s) 193, 340, 457, 466
MluCI AATT 2 cut(s) 263, 292
MlyI GAGTC 2 cut(s) 143, 281
MnlI CCTC 8 cut(s) 18, 29, 42, 131, 292, 390, 476, 506
MroI TCCGGA 1 cut(s) 21
MseI TTAA 1 cut(s) 266
MspI CCGG 2 cut(s) 22, 85
MspR9I CCNGG 2 cut(s) 85, 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 2 cut(s) 55, 240
MwoI GCNNNNNNNGC 2 cut(s) 223, 237
NciI CCSGG 1 cut(s) 85
NdeII GATC 3 cut(s) 183, 190, 304
NlaIII CATG 1 cut(s) 230
NmeAIII GCCGAG 2 cut(s) 157, 478
NmuCI GTSAC 3 cut(s) 3, 56, 346
PaqCI CACCTGC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 139, 367, 439
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 4 cut(s) 163, 166, 242, 318
PleI GAGTC 2 cut(s) 142, 280
PpsI GAGTC 2 cut(s) 142, 280
PshBI ATTAAT 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspPI GGNCC 2 cut(s) 27, 87
RsaI GTAC 2 cut(s) 116, 517
RsaNI GTAC 2 cut(s) 115, 516
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 4 cut(s) 162, 165, 241, 317
Sau3AI GATC 3 cut(s) 183, 190, 304
Sau96I GGNCC 2 cut(s) 27, 87
ScaI AGTACT 2 cut(s) 116, 517
SchI GAGTC 2 cut(s) 143, 281
ScrFI CCNGG 2 cut(s) 85, 528
SetI ASST 6 cut(s) 21, 151, 219, 237, 318, 489
SfaNI GCATC 2 cut(s) 176, 216
Sse9I AATT 2 cut(s) 263, 292
SsiI CCGC 4 cut(s) 90, 162, 240, 457
StyD4I CCNGG 2 cut(s) 83, 526
TaqI TCGA 4 cut(s) 137, 170, 270, 353
TasI AATT 2 cut(s) 263, 292
TatI WGTACW 2 cut(s) 114, 515
TauI GCSGC 2 cut(s) 164, 243
TfiI GAWTC 3 cut(s) 139, 367, 439
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 3 cut(s) 3, 56, 346
TseI GCWGC 2 cut(s) 164, 316
Tsp45I GTSAC 3 cut(s) 3, 56, 346
TspRI CASTG 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 295
VspI ATTAAT 1 cut(s) 266
ZrmI AGTACT 2 cut(s) 116, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.