Rh3BG231400

Protein TRANSPORT INHIBITOR RESPONSE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005204
Physical Location & Seq
Reverse (-)
21424438 .. 21426339
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG231400.1

Sequence Viewer

Length: 252 bp
ATGGAGCTGTCGTTCCCCGAGGAGGTGTTGGAGCACGTGTTCTCGTTCCTGCAGTTGGACGGCGATCGGAACTCGATCGCTCCTGTGCAAGTCGTGGTACGAGATCTAGCGGTTCTTGGCCCAGAAATGTTGAAATCGGAATTGCAACATGGTGAGTTAAAATGTGGTGGTACTCTGCGAGAGCGTGCTACCAGGCTTTTATGCTTAAATCTACCCCATAGAGAAGATTCCAAAGAAGCTGCTGGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
F-box F-box-like LRR_6

Protein Analysis

83

Amino Acids

9.27

Weight (kDa)

5.28

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDE2_2C PF13297 33 - 70 4.3e-13 Replication stress response SDE2 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AcvI CACGTG 1 cut(s) 37
AfaI GTAC 2 cut(s) 99, 172
AfiI CCNNNNNNNGG 2 cut(s) 22, 55
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 133
AjnI CCWGG 1 cut(s) 191
AloI GAACNNNNNNTCC 3 cut(s) 23, 28, 55
AluBI AGCT 2 cut(s) 7, 239
AluI AGCT 2 cut(s) 7, 239
Alw21I GWGCWC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 17
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 193
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 1 cut(s) 50
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 18
BsaXI ACNNNNNCTCC 3 cut(s) 23, 26, 53
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 55
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 2 cut(s) 22, 55
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 226
Bsh1285I CGRYCG 2 cut(s) 67, 78
BshFI GGCC 1 cut(s) 120
BsiEI CGRYCG 2 cut(s) 67, 78
BsiHKAI GWGCWC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 17
BslI CCNNNNNNNGG 2 cut(s) 22, 55
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 17
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 64, 75, 103
BspACI CCGC 1 cut(s) 110
BspANI GGCC 1 cut(s) 120
BspMAI CTGCAG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 3 cut(s) 64, 75, 103
Bst2UI CCWGG 1 cut(s) 193
BstBAI YACGTR 1 cut(s) 37
BstC8I GCNNGC 2 cut(s) 186, 244
BstKTI GATC 3 cut(s) 67, 78, 106
BstMBI GATC 3 cut(s) 64, 75, 103
BstMCI CGRYCG 2 cut(s) 67, 78
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSFI CTRYAG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 186, 244
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 2 cut(s) 98, 171
CviAII CATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 7, 120, 196, 239
CviKI_1 RGCY 4 cut(s) 7, 120, 196, 239
CviQI GTAC 2 cut(s) 98, 171
DpnI GATC 3 cut(s) 66, 77, 105
DpnII GATC 3 cut(s) 64, 75, 103
Eco72I CACGTG 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 191
FaeI CATG 1 cut(s) 152
FaiI YATR 3 cut(s) 150, 202, 219
FatI CATG 1 cut(s) 148
Fnu4HI GCNGC 1 cut(s) 240
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 107
GluI GCNGC 1 cut(s) 240
HaeIII GGCC 1 cut(s) 120
Hin1II CATG 1 cut(s) 152
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 2 cut(s) 69, 139
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 52, 88, 145
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 1 cut(s) 152
Kzo9I GATC 3 cut(s) 64, 75, 103
LmnI GCTCC 3 cut(s) 4, 31, 85
LpnPI CCDG 6 cut(s) 62, 96, 135, 178, 205, 228
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 1 cut(s) 107
MaeII ACGT 1 cut(s) 36
MalI GATC 3 cut(s) 66, 77, 105
MboI GATC 3 cut(s) 64, 75, 103
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 36
MluCI AATT 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 9, 36
MnlI CCTC 2 cut(s) 13, 16
MseI TTAA 2 cut(s) 158, 206
MspR9I CCNGG 1 cut(s) 193
MvaI CCWGG 1 cut(s) 193
NdeII GATC 3 cut(s) 64, 75, 103
NlaIII CATG 1 cut(s) 152
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 241
Ple19I CGATCG 2 cut(s) 67, 78
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 191
PspCI CACGTG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 191
PspPI GGNCC 1 cut(s) 119
PstI CTGCAG 1 cut(s) 54
PsuI RGATCY 1 cut(s) 103
PvuI CGATCG 2 cut(s) 67, 78
RsaI GTAC 2 cut(s) 99, 172
RsaNI GTAC 2 cut(s) 98, 171
SaqAI TTAA 2 cut(s) 158, 206
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 3 cut(s) 64, 75, 103
Sau96I GGNCC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 36
SetI ASST 4 cut(s) 9, 27, 39, 241
SfcI CTRYAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 140
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 191
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 140
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 158, 206
Tru9I TTAA 2 cut(s) 158, 206
TseI GCWGC 1 cut(s) 239
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.