Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Reverse (-)

293650 .. 293985

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgttgaaaatggagttgttgttccctgaggaggtgctggggcatgtgttctccttcctacagttggacggcgattggaactcgatctcgctggtgtgcaagtcgtggtacgagatcgagcgaagtggtgtggacgctagccaagtgtgcttcgttaattcaaagcaaggaagacgaggtgtacgagcggctgctttgtatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

68

Amino Acids

7.68

Weight (kDa)

5.66

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	188
AciI	CCGC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	110, 183
AfiI	CCNNNNNNNGG	2 cut(s)	31, 64
AgsI	TTSAA	2 cut(s)	7, 162
AloI	GAACNNNNNNTCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	191
AsuNHI	GCTAGC	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	27
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	178
BceAI	ACGGC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	59
BisI	GCNGC	2 cut(s)	189, 192
BlsI	GCNGC	2 cut(s)	190, 193
BmtI	GCTAGC	1 cut(s)	141
BpiI	GAAGAC	1 cut(s)	178
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 64
Bse21I	CCTNAGG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	31, 64
BseMII	CTCAG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	31, 64
Bsp143I	GATC	2 cut(s)	84, 114
BspACI	CCGC	1 cut(s)	188
BspCNI	CTCAG	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	141
BsrBI	CCGCTC	1 cut(s)	188
BssMI	GATC	2 cut(s)	84, 114
Bst4CI	ACNGT	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	1 cut(s)	27
BstKTI	GATC	2 cut(s)	87, 117
BstMBI	GATC	2 cut(s)	84, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	2 cut(s)	109, 182
CviAII	CATG	1 cut(s)	44
CviJI	RGCY	2 cut(s)	141, 191
CviKI_1	RGCY	2 cut(s)	141, 191
CviQI	GTAC	2 cut(s)	109, 182
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	2 cut(s)	86, 116
DpnII	GATC	2 cut(s)	84, 114
Eco81I	CCTNAGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	47
FaiI	YATR	2 cut(s)	45, 201
FatI	CATG	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	189, 192
Fsp4HI	GCNGC	2 cut(s)	189, 192
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	2 cut(s)	189, 192
GsaI	CCCAGC	1 cut(s)	41
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	1 cut(s)	47
Hpy166II	GTNNAC	2 cut(s)	133, 182
Hpy8I	GTNNAC	2 cut(s)	133, 182
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4V	TGCA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	147
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	47
Kzo9I	GATC	2 cut(s)	84, 114
LpnPI	CCDG	3 cut(s)	23, 39, 77
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	138
MalI	GATC	2 cut(s)	86, 116
MbiI	CCGCTC	1 cut(s)	188
MboI	GATC	2 cut(s)	84, 114
MboII	GAAGA	1 cut(s)	183
MluCI	AATT	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	22, 25, 170
MseI	TTAA	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	147
NdeII	GATC	2 cut(s)	84, 114
NheI	GCTAGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	47
NspI	RCATGY	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	190, 193
PspFI	CCCAGC	1 cut(s)	37
RsaI	GTAC	2 cut(s)	110, 183
RsaNI	GTAC	2 cut(s)	109, 182
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	189, 192
Sau3AI	GATC	2 cut(s)	84, 114
SetI	ASST	2 cut(s)	36, 181
SfcI	CTRYAG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	83, 117
TasI	AATT	1 cut(s)	157
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseI	GCWGC	1 cut(s)	191
XceI	RCATGY	1 cut(s)	47
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.