Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

6467655 .. 6468762

Gene Structure 1108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031586

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCACTGACCAAAATCTCTCTTTTTGCTCTCCGCCGTTTTACCCGTTCGATCCTAATCCAAGTCAAACCCACCGAATCCCCGACCCGACTCGCCTTTGCAAAATGGACGGAACCGCGGCTGCAGCACGTGTTCTCGTTTCTGCAGTCGGACGGCGATCGGAACTCGATCACGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAGGATATTGGTCGGGAACTGCTACGCTGCGTGCCCTAAGATTTTGATCAGACGGTTCCCAGACGTTAGATCCATCACACTCAAAGGGAAGCCGCACTTCGTTTACTTCAATCTGGTGTCGGAGGGCTGGGGTGGCTACGTGTATCCTTGGATCGCCGCCATGGCCGGTGCTTATCCTTGGCTAGAGGAGATCAGGCTCAAGAGGATGGTCGTCACCGACGAGAGCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCTTTAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCGAAGAGGAGAGATTTGATTGTGCTGCTTGCGGCCACGATTGTTGCGCCTGAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATCATGACAAGGCGCTTAAGAAATTCGGCAACGACATTGCTATTGCCTTCAGGTGAAGTAGTGGAGTGTGGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0000822 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006464 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008144 GO:0008150 GO:0008152 GO:0009267 GO:0009555 GO:0009605 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010011 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010152 GO:0010311 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016036 GO:0016567 GO:0016740 GO:0019005 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0032446 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033554 GO:0036094 GO:0036211 GO:0038023 GO:0038198 GO:0042221 GO:0042562 GO:0042594 GO:0043167 GO:0043168 GO:0043170 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045013 GO:0045014 GO:0045892 GO:0045934 GO:0045990 GO:0046015 GO:0048229 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060089 GO:0060255 GO:0061458 GO:0061984 GO:0061985 GO:0061986 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

F-box F-box-like LRR_6

Protein Analysis

241

Amino Acids

27.69

Weight (kDa)

9.49

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	41 - 73	3.6e-13	F-box
Transp_inhibit	PF18791	93 - 139	7.2e-24	Transport inhibitor response 1 protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	205
AccII	CGCG	1 cut(s)	118
AciI	CCGC	7 cut(s)	34, 116, 118, 205, 311, 375, 551
AclWI	GGATC	3 cut(s)	46, 282, 377
AcoI	YGGCCR	2 cut(s)	381, 552
AcsI	RAATTY	2 cut(s)	472, 667
AcuI	CTGAAG	1 cut(s)	678
AcvI	CACGTG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	194
AflII	CTTAAG	1 cut(s)	661
AflIII	ACRYGT	2 cut(s)	129, 357
AgsI	TTSAA	3 cut(s)	328, 469, 478
AleI	CACNNNNGTG	1 cut(s)	176
AluBI	AGCT	5 cut(s)	444, 451, 481, 495, 622
AluI	AGCT	5 cut(s)	444, 451, 481, 495, 622
Alw21I	GWGCWC	1 cut(s)	497
AlwI	GGATC	3 cut(s)	46, 282, 377
AoxI	GGCC	2 cut(s)	381, 552
ApeKI	GCWGC	4 cut(s)	121, 124, 245, 544
ApoI	RAATTY	2 cut(s)	472, 667
AspLEI	GCGC	2 cut(s)	568, 660
AsuHPI	GGTGA	3 cut(s)	424, 511, 710
AxyI	CCTNAGG	1 cut(s)	570
BaeGI	GKGCMC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	497
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	4 cut(s)	108, 136, 232, 531
BccI	CCATC	2 cut(s)	299, 418
BceAI	ACGGC	2 cut(s)	21, 169
BciVI	GTATCC	1 cut(s)	372
BclI	TGATCA	1 cut(s)	264
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	122, 143
BfoI	RGCGCY	1 cut(s)	661
BfrI	CTTAAG	1 cut(s)	661
BfuI	GTATCC	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	8 cut(s)	119, 122, 125, 246, 311, 375, 545, 552
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	8 cut(s)	120, 123, 126, 247, 312, 376, 546, 553
BmiI	GGNNCC	2 cut(s)	114, 275
BplI	GAGNNNNNCTC	2 cut(s)	619, 651
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	401, 644, 662
BsaAI	YACGTR	2 cut(s)	130, 358
BsaBI	GATNNNNATC	2 cut(s)	56, 263
BsaJI	CCNNGG	4 cut(s)	116, 365, 378, 395
Bse118I	RCCGGY	1 cut(s)	383
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	680
Bse8I	GATNNNNATC	2 cut(s)	56, 263
BseDI	CCNNGG	4 cut(s)	116, 365, 378, 395
BseGI	GGATG	2 cut(s)	429, 580
BseJI	GATNNNNATC	2 cut(s)	56, 263
BseMI	GCAATG	1 cut(s)	680
BseMII	CTCAG	2 cut(s)	530, 561
BseRI	GAGGAG	3 cut(s)	232, 419, 541
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	108, 136, 232, 531
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	383, 554
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	384
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	383, 554
Bsp1286I	GDGCHC	2 cut(s)	254, 497
Bsp143I	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	7 cut(s)	34, 116, 118, 205, 311, 375, 551
BspANI	GGCC	2 cut(s)	383, 554
BspCNI	CTCAG	2 cut(s)	529, 562
BspFNI	CGCG	1 cut(s)	118
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	2 cut(s)	114, 275
BspMAI	CTGCAG	2 cut(s)	126, 147
BspPI	GGATC	3 cut(s)	46, 282, 377
BspTI	CTTAAG	1 cut(s)	661
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	680
BsrFI	RCCGGY	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	383
BssECI	CCNNGG	4 cut(s)	116, 365, 378, 395
BssMI	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
BssT1I	CCWWGG	3 cut(s)	365, 378, 395
Bst4CI	ACNGT	1 cut(s)	273
Bst6I	CTCTTC	2 cut(s)	518, 642
BstAFI	CTTAAG	1 cut(s)	661
BstBAI	YACGTR	2 cut(s)	130, 358
BstC8I	GCNNGC	2 cut(s)	250, 549
BstDEI	CTNAG	4 cut(s)	255, 516, 570, 615
BstDSI	CCRYGG	2 cut(s)	116, 378
BstF5I	GGATG	2 cut(s)	429, 580
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	661
BstHHI	GCGC	2 cut(s)	568, 660
BstKTI	GATC	9 cut(s)	54, 160, 171, 201, 267, 290, 372, 411, 648
BstMBI	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	124, 351, 380, 512
BstNSI	RCATGY	1 cut(s)	721
BstSFI	CTRYAG	2 cut(s)	122, 143
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	4 cut(s)	108, 136, 232, 531
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
Bsu36I	CCTNAGG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	383, 554
BtgI	CCRYGG	2 cut(s)	116, 378
BtsCI	GGATG	2 cut(s)	429, 580
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	2 cut(s)	250, 549
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	2 cut(s)	568, 660
Cfr10I	RCCGGY	1 cut(s)	383
Cfr42I	CCGCGG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	193
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	3 cut(s)	379, 649, 718
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	4 cut(s)	255, 516, 570, 615
DpnI	GATC	9 cut(s)	53, 159, 170, 200, 266, 289, 371, 410, 647
DpnII	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
EaeI	YGGCCR	2 cut(s)	381, 552
Eam1104I	CTCTTC	2 cut(s)	518, 642
EarI	CTCTTC	2 cut(s)	518, 642
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	495
Eco130I	CCWWGG	3 cut(s)	365, 378, 395
Eco24I	GRGCYC	1 cut(s)	497
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	1 cut(s)	678
Eco72I	CACGTG	1 cut(s)	130
Eco81I	CCTNAGG	1 cut(s)	570
EcoICRI	GAGCTC	1 cut(s)	495
EcoT14I	CCWWGG	3 cut(s)	365, 378, 395
EcoT38I	GRGCYC	1 cut(s)	497
ErhI	CCWWGG	3 cut(s)	365, 378, 395
FaeI	CATG	3 cut(s)	382, 652, 721
FaiI	YATR	4 cut(s)	380, 603, 650, 719
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	3 cut(s)	378, 648, 717
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	8 cut(s)	119, 122, 125, 246, 311, 375, 545, 552
FokI	GGATG	2 cut(s)	436, 587
FriOI	GRGCYC	1 cut(s)	497
Fsp4HI	GCNGC	8 cut(s)	119, 122, 125, 246, 311, 375, 545, 552
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	567, 659
GluI	GCNGC	8 cut(s)	119, 122, 125, 246, 311, 375, 545, 552
GsaI	CCCAGC	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	661
HaeIII	GGCC	2 cut(s)	383, 554
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	2 cut(s)	568, 660
Hin1II	CATG	3 cut(s)	382, 652, 721
Hin6I	GCGC	2 cut(s)	566, 658
HinP1I	GCGC	2 cut(s)	566, 658
HinfI	GANTC	2 cut(s)	77, 90
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	3 cut(s)	424, 511, 710
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	4 cut(s)	151, 162, 269, 340
Hpy188III	TCNNGA	5 cut(s)	232, 418, 469, 641, 649
Hpy8I	GTNNAC	1 cut(s)	322
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	496, 702
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4IV	ACGT	3 cut(s)	129, 282, 357
HpyCH4V	TGCA	5 cut(s)	101, 124, 145, 183, 213
HpyF10VI	GCNNNNNNNGC	4 cut(s)	124, 351, 380, 512
HpyF3I	CTNAG	4 cut(s)	255, 516, 570, 615
HpySE526I	ACGT	3 cut(s)	129, 282, 357
Hsp92II	CATG	3 cut(s)	382, 652, 721
HspAI	GCGC	2 cut(s)	566, 658
Ksp22I	TGATCA	1 cut(s)	264
KspI	CCGCGG	1 cut(s)	119
Kzo9I	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
LmnI	GCTCC	3 cut(s)	448, 492, 619
LpnPI	CCDG	9 cut(s)	161, 199, 291, 317, 331, 397, 397, 582, 681
Lsp1109I	GCAGC	4 cut(s)	108, 136, 232, 531
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	3 cut(s)	129, 282, 357
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	9 cut(s)	53, 159, 170, 200, 266, 289, 371, 410, 647
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
MboII	GAAGA	2 cut(s)	535, 629
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	2 cut(s)	254, 497
MluCI	AATT	3 cut(s)	472, 608, 667
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	2 cut(s)	129, 318
MnlI	CCTC	9 cut(s)	210, 213, 334, 397, 414, 519, 565, 583, 589
MseI	TTAA	1 cut(s)	662
MslI	CAYNNNNRTG	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	118
MspCI	CTTAAG	1 cut(s)	661
MspI	CCGG	1 cut(s)	384
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	517
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	4 cut(s)	124, 351, 380, 512
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
NlaIII	CATG	3 cut(s)	382, 652, 721
NlaIV	GGNNCC	2 cut(s)	114, 275
NmuCI	GTSAC	1 cut(s)	430
NspI	RCATGY	1 cut(s)	721
OliI	CACNNNNGTG	1 cut(s)	176
PagI	TCATGA	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	8 cut(s)	120, 123, 126, 247, 312, 376, 546, 553
Ple19I	CGATCG	1 cut(s)	160
PleI	GAGTC	1 cut(s)	84
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	84
Ppu21I	YACGTR	2 cut(s)	130, 358
Psp124BI	GAGCTC	1 cut(s)	497
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	114, 275
PstI	CTGCAG	2 cut(s)	126, 147
PsuI	RGATCY	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	176
SacI	GAGCTC	1 cut(s)	497
SacII	CCGCGG	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	662
SatI	GCNGC	8 cut(s)	119, 122, 125, 246, 311, 375, 545, 552
Sau3AI	GATC	9 cut(s)	51, 157, 168, 198, 264, 287, 369, 408, 645
SchI	GAGTC	1 cut(s)	84
SduI	GDGCHC	2 cut(s)	254, 497
SfcI	CTRYAG	2 cut(s)	122, 143
Sfr303I	CCGCGG	1 cut(s)	119
SgrBI	CCGCGG	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	176
SmlI	CTYRAG	4 cut(s)	416, 623, 641, 661
SmoI	CTYRAG	4 cut(s)	416, 623, 641, 661
Sse9I	AATT	3 cut(s)	472, 608, 667
SsiI	CCGC	7 cut(s)	34, 116, 118, 205, 311, 375, 551
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	497
StyI	CCWWGG	3 cut(s)	365, 378, 395
TaaI	ACNGT	1 cut(s)	273
TaiI	ACGT	3 cut(s)	132, 285, 360
TaqI	TCGA	3 cut(s)	50, 167, 201
TasI	AATT	3 cut(s)	472, 608, 667
TauI	GCSGC	4 cut(s)	121, 313, 377, 554
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	662
Tru9I	TTAA	1 cut(s)	662
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	4 cut(s)	121, 124, 245, 544
Tsp45I	GTSAC	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	12
Vha464I	CTTAAG	1 cut(s)	661
XapI	RAATTY	2 cut(s)	472, 667
XceI	RCATGY	1 cut(s)	721
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.