Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

15536736 .. 15545868

Gene Structure 9133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG074500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGACGGAACCGCGGCTGCAGCACGTGTTCTCGTTTCTGCAGTCGGACGGCGATCGGAACTCGATCTCGCTGCTCCGCTAGGTTCATTTCGTGTGCCGAACCAGGAGGTGACGTTTTCGCAGAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCAAAGAGGAGAGATTCGATTGTGCCGCTTGAGGCCAAGATTGTTGCGCCTGAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATCATGACAAGGCGCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCAGCCACCACTTGCCCAATGTTCTCTGTGGATTGGTCAGCTCCTCCCATCATTCACGACATTAAGCTCCTTGCTGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

137

Amino Acids

14.93

Weight (kDa)

5.46

Isoelectric Point (pI)

56.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	4 cut(s)	12, 14, 77, 182
AcsI	RAATTY	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	4 cut(s)	132, 259, 371, 397
AluI	AGCT	4 cut(s)	132, 259, 371, 397
Alw21I	GWGCWC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	4 cut(s)	17, 20, 71, 404
ApoI	RAATTY	1 cut(s)	304
AspLEI	GCGC	2 cut(s)	205, 297
AsuHPI	GGTGA	2 cut(s)	121, 148
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	4, 32, 58, 391
BccI	CCATC	1 cut(s)	386
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	18, 39
BfoI	RGCGCY	1 cut(s)	298
BisI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 405
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	6 cut(s)	16, 19, 22, 73, 183, 406
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	4 cut(s)	206, 281, 299, 319
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse21I	CCTNAGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	2 cut(s)	167, 198
BseRI	GAGGAG	2 cut(s)	178, 363
BseXI	GCAGC	4 cut(s)	4, 32, 58, 391
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	53, 64, 282
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	4 cut(s)	12, 14, 77, 182
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	166, 199
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	2 cut(s)	22, 43
BsrDI	GCAATG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	53, 64, 282
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	153, 207, 252, 411
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	205, 297
BstKTI	GATC	3 cut(s)	56, 67, 285
BstMBI	GATC	3 cut(s)	53, 64, 282
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 149
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	18, 39
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	4 cut(s)	4, 32, 58, 391
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	2 cut(s)	205, 297
Cfr42I	CCGCGG	1 cut(s)	15
CviAII	CATG	1 cut(s)	286
DdeI	CTNAG	4 cut(s)	153, 207, 252, 411
DpnI	GATC	3 cut(s)	55, 66, 284
DpnII	GATC	3 cut(s)	53, 64, 282
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	1 cut(s)	289
FaiI	YATR	2 cut(s)	240, 287
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 405
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 405
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	2 cut(s)	204, 296
GluI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 405
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	205, 297
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	203, 295
HinP1I	GCGC	2 cut(s)	203, 295
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	2 cut(s)	121, 148
Hpy188I	TCNGA	2 cut(s)	47, 58
Hpy188III	TCNNGA	3 cut(s)	278, 286, 386
HpyAV	CCTTC	2 cut(s)	133, 339
HpyCH4IV	ACGT	2 cut(s)	25, 113
HpyCH4V	TGCA	2 cut(s)	20, 41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 149
HpyF3I	CTNAG	4 cut(s)	153, 207, 252, 411
HpySE526I	ACGT	2 cut(s)	25, 113
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	203, 295
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	53, 64, 282
LmnI	GCTCC	5 cut(s)	79, 129, 256, 376, 402
LpnPI	CCDG	3 cut(s)	89, 116, 219
Lsp1109I	GCAGC	4 cut(s)	4, 32, 58, 391
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	2 cut(s)	25, 113
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	55, 66, 284
MboI	GATC	3 cut(s)	53, 64, 282
MboII	GAAGA	1 cut(s)	266
MfeI	CAATTG	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	2 cut(s)	245, 304
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	8 cut(s)	100, 117, 156, 181, 202, 220, 226, 384
MseI	TTAA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	20, 149
NdeII	GATC	3 cut(s)	53, 64, 282
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	285
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	16, 19, 22, 73, 183, 406
Ple19I	CGATCG	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	2 cut(s)	22, 43
PvuI	CGATCG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	134
SacII	CCGCGG	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 405
Sau3AI	GATC	3 cut(s)	53, 64, 282
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	9 cut(s)	28, 85, 111, 116, 128, 134, 261, 373, 399
SfcI	CTRYAG	2 cut(s)	18, 39
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SmlI	CTYRAG	4 cut(s)	185, 260, 278, 298
SmoI	CTYRAG	4 cut(s)	185, 260, 278, 298
Sse9I	AATT	2 cut(s)	245, 304
SsiI	CCGC	4 cut(s)	12, 14, 77, 182
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	102
TaiI	ACGT	2 cut(s)	28, 116
TaqI	TCGA	2 cut(s)	63, 173
TasI	AATT	2 cut(s)	245, 304
TauI	GCSGC	2 cut(s)	17, 184
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	4 cut(s)	17, 20, 71, 404
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	21
XapI	RAATTY	1 cut(s)	304
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.