Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

32703988 .. 32704684

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCCGTGCTTATCCTTGGCTCGAGGAGATCGAGGCTCAAGAGGATGGTCGTCACCGACGAGAGCTTGGAGCTGATTTGCAAGTCTTTCAAGAATTTCAAGCTCCTTGTAAATATAAGTATGAATTTTTCGTGGAATTTTGCAGCTCCGCTAGGTTCATTTCGTGTGCCGAACCGTGCGGTGACATTTTCGCAGAGGAGGAGCTTTGTGAAGGCCGTGAATGCTCGGCCGAAGAGGAACGATTGTTGCTCTGAGGATGTTGAGAAAGTGGAGGCGGGGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATTATGACAAGGCGCTTGAGAAATTCGGCAACGACATTGCTATTGCCTTCGGGTGAAGTAGTGGAGTGTGGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

134

Amino Acids

15.13

Weight (kDa)

9.46

Isoelectric Point (pI)

58.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	149, 179, 275
AcoI	YGGCCR	2 cut(s)	3, 227
AcsI	RAATTY	4 cut(s)	94, 124, 136, 349
AgsI	TTSAA	2 cut(s)	91, 100
AluBI	AGCT	6 cut(s)	66, 73, 103, 146, 204, 304
AluI	AGCT	6 cut(s)	66, 73, 103, 146, 204, 304
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	3, 213, 227
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	4 cut(s)	94, 124, 136, 349
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	46, 193, 392
AvaI	CYCGRG	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	152
BfoI	RGCGCY	1 cut(s)	343
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmeT110I	CYCGRG	1 cut(s)	22
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	4 cut(s)	23, 326, 344, 364
BsaJI	CCNNGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	51, 262
BseMI	GCAATG	1 cut(s)	362
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	3 cut(s)	40, 211, 214
BseX3I	CGGCCG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	5, 215, 229
BsiEI	CGRYCG	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	5, 215, 229
BsoBI	CYCGRG	1 cut(s)	22
Bsp143I	GATC	1 cut(s)	29
BspACI	CCGC	3 cut(s)	149, 179, 275
BspANI	GGCC	3 cut(s)	5, 215, 229
BspCNI	CTCAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	16
BssMI	GATC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	2 cut(s)	227, 324
BstDEI	CTNAG	2 cut(s)	252, 297
BstF5I	GGATG	2 cut(s)	51, 262
BstH2I	RGCGCY	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	1 cut(s)	32
BstMBI	GATC	1 cut(s)	29
BstMCI	CGRYCG	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	155
BstZI	CGGCCG	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	5, 215, 229
BtsCI	GGATG	2 cut(s)	51, 262
CfoI	GCGC	1 cut(s)	342
CviAII	CATG	1 cut(s)	400
DdeI	CTNAG	2 cut(s)	252, 297
DpnI	GATC	1 cut(s)	31
DpnII	GATC	1 cut(s)	29
EaeI	YGGCCR	2 cut(s)	3, 227
EagI	CGGCCG	1 cut(s)	227
Eam1104I	CTCTTC	2 cut(s)	227, 324
EarI	CTCTTC	2 cut(s)	227, 324
EclXI	CGGCCG	1 cut(s)	227
Eco130I	CCWWGG	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	16
FaeI	CATG	1 cut(s)	403
FaiI	YATR	5 cut(s)	116, 122, 285, 332, 401
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	58, 269
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	152
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	343
HaeIII	GGCC	3 cut(s)	5, 215, 229
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HphI	GGTGA	3 cut(s)	46, 193, 392
Hpy188I	TCNGA	1 cut(s)	253
Hpy188III	TCNNGA	3 cut(s)	40, 91, 323
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	205, 384
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	81, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	2 cut(s)	252, 297
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	29
LmnI	GCTCC	5 cut(s)	70, 108, 151, 201, 301
Lsp1109I	GCAGC	1 cut(s)	155
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	2 cut(s)	52, 181
MalI	GATC	1 cut(s)	31
MboI	GATC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	244, 311
MfeI	CAATTG	1 cut(s)	290
MluCI	AATT	5 cut(s)	94, 124, 136, 290, 349
MnlI	CCTC	8 cut(s)	18, 27, 36, 189, 192, 228, 247, 265
MunI	CAATTG	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	1 cut(s)	29
NlaIII	CATG	1 cut(s)	403
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	2 cut(s)	52, 181
NspI	RCATGY	1 cut(s)	403
PaeR7I	CTCGAG	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	2 cut(s)	29, 57
PctI	GAATGC	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	145
PspXI	VCTCGAGB	1 cut(s)	22
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	29
SetI	ASST	7 cut(s)	68, 75, 105, 148, 157, 206, 306
Sfr274I	CTCGAG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	22
SmlI	CTYRAG	5 cut(s)	22, 38, 305, 323, 343
SmoI	CTYRAG	5 cut(s)	22, 38, 305, 323, 343
Sse9I	AATT	5 cut(s)	94, 124, 136, 290, 349
SsiI	CCGC	3 cut(s)	149, 179, 275
SspMI	CTAG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	23, 32
TasI	AATT	5 cut(s)	94, 124, 136, 290, 349
TseFI	GTSAC	2 cut(s)	52, 181
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	52, 181
TspDTI	ATGAA	2 cut(s)	137, 147
XapI	RAATTY	4 cut(s)	94, 124, 136, 349
XceI	RCATGY	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	22
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.