Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

64695465 .. 64696209

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG436100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGACGGAACCGCGGCTGCAGCACGTGTTCTCGTTTCTGCAGTCGGACGGCGATCGGAACTCGATCTAGCTGCTCCGCTAGGTTCATTTCGTGTGCCGAACCAGGCGGTGACGTTTTCGCAGAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCGAAGAGGAGAGATTCGATTGTGCCGCTTGCGGCCACGATTGTTGCGCCTGAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATCATGACAAGGCGCTTGAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

102

Amino Acids

11.13

Weight (kDa)

6.28

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	14
AciI	CCGC	6 cut(s)	12, 14, 77, 107, 182, 188
AcoI	YGGCCR	1 cut(s)	189
AcvI	CACGTG	1 cut(s)	26
AflIII	ACRYGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	71, 132, 259
AluI	AGCT	3 cut(s)	71, 132, 259
Alw21I	GWGCWC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	3 cut(s)	17, 20, 71
AspLEI	GCGC	2 cut(s)	205, 297
AsuHPI	GGTGA	2 cut(s)	121, 148
AxyI	CCTNAGG	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	4, 32, 58
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	2 cut(s)	68, 80
BfmI	CTRYAG	2 cut(s)	18, 39
BfoI	RGCGCY	1 cut(s)	298
BisI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 189
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	6 cut(s)	16, 19, 22, 73, 183, 190
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	281, 299
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	217
BseMII	CTCAG	2 cut(s)	167, 198
BseRI	GAGGAG	1 cut(s)	178
BseXI	GCAGC	3 cut(s)	4, 32, 58
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	134
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	53, 64, 282
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	12, 14, 77, 107, 182, 188
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	166, 199
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	2 cut(s)	22, 43
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	53, 64, 282
Bst2UI	CCWGG	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	155, 279
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	3 cut(s)	153, 207, 252
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	205, 297
BstKTI	GATC	3 cut(s)	56, 67, 285
BstMBI	GATC	3 cut(s)	53, 64, 282
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 149
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	18, 39
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	3 cut(s)	4, 32, 58
Bsu36I	CCTNAGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	186
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	2 cut(s)	205, 297
Cfr42I	CCGCGG	1 cut(s)	15
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	1 cut(s)	286
CviJI	RGCY	8 cut(s)	17, 71, 132, 143, 157, 191, 251, 259
CviKI_1	RGCY	8 cut(s)	17, 71, 132, 143, 157, 191, 251, 259
DdeI	CTNAG	3 cut(s)	153, 207, 252
DpnI	GATC	3 cut(s)	55, 66, 284
DpnII	GATC	3 cut(s)	53, 64, 282
EaeI	YGGCCR	1 cut(s)	189
Eam1104I	CTCTTC	2 cut(s)	155, 279
EarI	CTCTTC	2 cut(s)	155, 279
Ecl136II	GAGCTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
Eco72I	CACGTG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	1 cut(s)	289
FaiI	YATR	2 cut(s)	240, 287
FatI	CATG	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 189
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 189
FspBI	CTAG	2 cut(s)	68, 80
GlaI	GCGC	2 cut(s)	204, 296
GluI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 189
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	205, 297
Hin1II	CATG	1 cut(s)	289
Hin6I	GCGC	2 cut(s)	203, 295
HinP1I	GCGC	2 cut(s)	203, 295
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	2 cut(s)	121, 148
Hpy188I	TCNGA	2 cut(s)	47, 58
Hpy188III	TCNNGA	2 cut(s)	278, 286
HpyAV	CCTTC	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	25, 113
HpyCH4V	TGCA	2 cut(s)	20, 41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 149
HpyF3I	CTNAG	3 cut(s)	153, 207, 252
HpySE526I	ACGT	2 cut(s)	25, 113
Hsp92II	CATG	1 cut(s)	289
HspAI	GCGC	2 cut(s)	203, 295
KspI	CCGCGG	1 cut(s)	15
Kzo9I	GATC	3 cut(s)	53, 64, 282
LmnI	GCTCC	3 cut(s)	79, 129, 256
LpnPI	CCDG	3 cut(s)	89, 116, 219
Lsp1109I	GCAGC	3 cut(s)	4, 32, 58
MaeI	CTAG	2 cut(s)	68, 80
MaeII	ACGT	2 cut(s)	25, 113
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	3 cut(s)	55, 66, 284
MboI	GATC	3 cut(s)	53, 64, 282
MboII	GAAGA	2 cut(s)	172, 266
MfeI	CAATTG	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	2 cut(s)	245, 304
MmeI	TCCRAC	1 cut(s)	25
MnlI	CCTC	5 cut(s)	117, 156, 202, 220, 226
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	20, 149
NdeII	GATC	3 cut(s)	53, 64, 282
NlaIII	CATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	285
PctI	GAATGC	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	16, 19, 22, 73, 183, 190
Ple19I	CGATCG	1 cut(s)	56
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	26
Psp124BI	GAGCTC	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	102
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	10
PstI	CTGCAG	2 cut(s)	22, 43
PvuI	CGATCG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	134
SacII	CCGCGG	1 cut(s)	15
SatI	GCNGC	6 cut(s)	15, 18, 21, 72, 182, 189
Sau3AI	GATC	3 cut(s)	53, 64, 282
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	7 cut(s)	28, 73, 85, 116, 128, 134, 261
SfcI	CTRYAG	2 cut(s)	18, 39
Sfr303I	CCGCGG	1 cut(s)	15
SgrBI	CCGCGG	1 cut(s)	15
SmlI	CTYRAG	3 cut(s)	260, 278, 298
SmoI	CTYRAG	3 cut(s)	260, 278, 298
Sse9I	AATT	2 cut(s)	245, 304
SsiI	CCGC	6 cut(s)	12, 14, 77, 107, 182, 188
SspMI	CTAG	2 cut(s)	68, 80
SstI	GAGCTC	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	102
TaiI	ACGT	2 cut(s)	28, 116
TaqI	TCGA	2 cut(s)	63, 173
TasI	AATT	2 cut(s)	245, 304
TauI	GCSGC	3 cut(s)	17, 184, 191
TfiI	GAWTC	1 cut(s)	170
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	3 cut(s)	17, 20, 71
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	21
XspI	CTAG	2 cut(s)	68, 80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.