Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012396.1

Orthogroup ID

OG0005204

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1530

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012396.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 421 bp

attctggaaaatcctcattatcatcatcacaacaaagaagaacgaagagaggagtttgattctttccgattcccaagaaatggctctctctgctgctgctgcttcgtcttctaccgcaatctctgctcggaccttctcctctgacctcaaaggtccgcagctaggttcatttcgcgtgccgaaccaggcggtgacgttttcgcagagatggagctcggtgaaatctgtgaatgctcagcccaagaggagcgactcgattgtgccgcttgcggccacgattgttgcgcctgaggaggttgagaaagcggaggtggaggactatgagaaattggctaaggagcttgagactgcttctcctcttgagatcatggacaaggctcttgagaaattcggcaacgacattgctattgccttcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0003674 GO:0003824 GO:0004604 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009973 GO:0009987 GO:0016491 GO:0016667 GO:0016671 GO:0019379 GO:0019419 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00920 ko01120 map00920 map01120

Pfam Domains

Protein Families

PAPS_reduct Thioredoxin

Protein Analysis

139

Amino Acids

15.22

Weight (kDa)

5.29

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005204)

Species	Orthologous Gene IDs
malus_domestica	MD02G1202200.v1.1
pyrus_communis	pycom10g09280 pycom11g26260 pycom17g00390
rosa_chinensis	RchiOBHm_Chr3g0474641 RchiOBHm_Chr5g0072941 RchiOBHm_Chr6g0298981 RchiOBHm_Chr7g0225111 RchiOBHm_Chr7g0242311
rosa_laevigata	RLG00000013371 RLG00000031586
rosa_multiflora	Rmu_sc0002150.1_g000008 Rmu_sc0002343.1_g000057 Rmu_sc0002855.1_g000006 Rmu_sc0012396.1_g000001
rosa_roxburghii	Rroxscaffold_1G00038170 Rroxscaffold_4G00322080 Rroxscaffold_5G00360220 Rroxscaffold_6G00410280
rosa_rugosa	Rorug02G0183800 Rorug05G0539500
rosa_samantha	Rh1CG074500 Rh1DG106700 Rh1DG436100 Rh3BG231400 Rh5AG336800 Rh5AG475100 Rh7AG347900 Rh7CG365300
rosa_wichuraiana	Rw5G044110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AccII	CGCG	1 cut(s)	175
AciI	CCGC	6 cut(s)	115, 156, 189, 264, 270, 306
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	80, 162
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	3 cut(s)	161, 214, 341
AluI	AGCT	3 cut(s)	161, 214, 341
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	339
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	4 cut(s)	93, 96, 99, 158
ApoI	RAATTY	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	130, 153
AsuHPI	GGTGA	2 cut(s)	203, 230
AvaII	GGWCC	2 cut(s)	130, 153
AxyI	CCTNAGG	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	80, 83, 86, 170
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	6 cut(s)	94, 97, 100, 159, 264, 271
BlpI	GCTNAGC	1 cut(s)	235
BlsI	GCNGC	6 cut(s)	95, 98, 101, 160, 265, 272
Bme1390I	CCNGG	1 cut(s)	186
Bme18I	GGWCC	2 cut(s)	130, 153
BmgT120I	GGNCC	2 cut(s)	130, 153
BmrFI	CCNGG	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	334
Bpu1102I	GCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	3 cut(s)	363, 381, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 162
Bse21I	CCTNAGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	80, 162
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	249, 280
BseRI	GAGGAG	5 cut(s)	65, 128, 260, 306, 346
BseXI	GCAGC	4 cut(s)	80, 83, 86, 170
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	80, 162
BsmAI	GTCTC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	364
Bsp1720I	GCTNAGC	1 cut(s)	235
BspACI	CCGC	6 cut(s)	115, 156, 189, 264, 270, 306
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	2 cut(s)	248, 281
BspFNI	CGCG	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	400
BssMI	GATC	1 cut(s)	364
Bst2UI	CCWGG	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	177, 268
BstDEI	CTNAG	3 cut(s)	235, 289, 334
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 99, 123
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	4 cut(s)	80, 83, 86, 170
BstV2I	GAAGAC	1 cut(s)	100
Bsu36I	CCTNAGG	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	273
Cac8I	GCNNGC	2 cut(s)	177, 268
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	130, 153
CspCI	CAANNNNNGTGG	2 cut(s)	263, 298
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	8 cut(s)	84, 161, 214, 239, 273, 333, 341, 378
CviKI_1	RGCY	8 cut(s)	84, 161, 214, 239, 273, 333, 341, 378
DdeI	CTNAG	3 cut(s)	235, 289, 334
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	130, 153
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	398
Eco81I	CCTNAGG	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	1 cut(s)	371
FaiI	YATR	2 cut(s)	322, 369
FatI	CATG	1 cut(s)	367
Fnu4HI	GCNGC	6 cut(s)	94, 97, 100, 159, 264, 271
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	6 cut(s)	94, 97, 100, 159, 264, 271
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	6 cut(s)	94, 97, 100, 159, 264, 271
HaeIII	GGCC	1 cut(s)	273
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	1 cut(s)	371
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	3 cut(s)	59, 69, 252
HphI	GGTGA	2 cut(s)	203, 230
Hpy188I	TCNGA	3 cut(s)	68, 130, 143
Hpy188III	TCNNGA	3 cut(s)	5, 360, 381
HpyAV	CCTTC	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	195
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 99, 123
HpyF3I	CTNAG	3 cut(s)	235, 289, 334
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	371
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	211, 247, 338
LpnPI	CCDG	4 cut(s)	171, 198, 301, 401
Lsp1109I	GCAGC	4 cut(s)	80, 83, 86, 170
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	3 cut(s)	50, 57, 100
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	327, 387
MlyI	GAGTC	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	186
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	90, 99, 123
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	371
NmuCI	GTSAC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	236
PfeI	GAWTC	2 cut(s)	59, 69
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	6 cut(s)	95, 98, 101, 160, 265, 272
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	130, 153
SacI	GAGCTC	1 cut(s)	216
SatI	GCNGC	6 cut(s)	94, 97, 100, 159, 264, 271
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	2 cut(s)	130, 153
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	216
SinI	GGWCC	2 cut(s)	130, 153
SmlI	CTYRAG	3 cut(s)	342, 360, 381
SmoI	CTYRAG	3 cut(s)	342, 360, 381
Sse9I	AATT	2 cut(s)	327, 387
SsiI	CCGC	6 cut(s)	115, 156, 189, 264, 270, 306
SspMI	CTAG	1 cut(s)	162
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	184
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	327, 387
TauI	GCSGC	2 cut(s)	266, 273
TfiI	GAWTC	2 cut(s)	59, 69
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	4 cut(s)	93, 96, 99, 158
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	80
VpaK11BI	GGWCC	2 cut(s)	130, 153
XapI	RAATTY	1 cut(s)	387
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.