Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004171

Physical Location & Seq

Genomic Coordinates Reverse (-)

3929381 .. 3934685

Gene Structure 5305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGAAAGATAAGAACTTGAAGTCGGAATTGGAATCTGTGGTTAGGCAAGCAAAGAAGCTTTCGGTTTCGTATTGTAGGATTCATTTGGGAAATCCCGAATCGTTCCCCAACCCGAATTTCGATTCGAATAAGTCGAATGCGTCGCCTTTATTGCCATTGATTTTCTCAGAGGGCGGTGGTTCGGTTGATGGGTTCGGAGGAAGTGGGAGTAGTGGGGGAATTCAGTGCCCACCTGGGTTTTTGGAGGAGTTCTTCACTGACTCCGATTTGGATAGCTTGGACCCAATATTGAAGGGGTTGTATGAGGAGCTTAGGGAAATTGTGCTTAAGGTTTCGGCCCTCGGAAACTTCCAGCAGCCATTGAGGGCTCTGTATTTGTTGGTTAAGTTTCCGGTTGGTGCAAGGTCACTTGTGAATCACCCGTGGTGGATTCCGAAAGGGGTGTACTTGAATGGGCGTGTCATTGAGAGGACTAGCATTTTGGGTCCTTTTTTTCATGTCAGTGCTCTGCCTGATCATCCTATTTTCAAGAGCCAGCCTGATGTTGGGCAACAGTGCTTTTCTGACGCTTCAACTCGTAGACCTGCTGATCTGCTATCTTCATTTGCCACAATTAAGACGGTCATGAGTAACTTATACGATGGCCTTACTGAAGTTCTTCTCTTACTACTGAAAAATGCTACCTCTCGTGAGAATGTTCTTGAGTATCTTGCAGAGGTGATCAACAAAAACTCATCAAGGGCCCATATTCAGGTGGATCCTCTTTCATGTGCAAGTTCAGGCATGTTTGTCAATCTCAGTGCTGTCATGCTTCGGCTTTGTGAGCCGTTTTTGGATGCAAATTTAACAAAAAGGGACAAAATCGATCCAAAATATGTATTTTACAGTAACCGTTTGGAGTTAAGAGGTTTGACTGCTTTACATGCATCATCTGAAGAAGTAACTGAATGGATTAATAAAGCTAATATGGGGAGTACTGATGGTGAAAATCGCCTTTTACAATCTCAAGAAGCCACCAGTTCCGGTAATAGTGTCAATGTGAAGCCAAGCAGTGAAAAAGCTAAATATTCATTTATTTGTGAATGCTTCTTCATGACTGCAAGGGTGCTCAATCTGGGGTTGCTGAAAGCATTTTCTGACTTTAAACATTTAGTACAGGACATTTCAAGGTCTGAAGATACTCTTTCCACACTTAAAGCCATGCAAGGCCAGACATCTTCTCCACAATTGGAGATGGATATAGCTCGCCTTGAGAAGGAAATAGAGTCGTATTCGCAGGAAAAGCTTTGTTACGAAGCTCAGATATTAAGGGATCCGACACTTATACAGAGTGCTCTTACTTTCTACCGTTTGATGGTGGTGTGGCTAGTTCGCTTGGTTGGTGGATTTAAAATGCCTCTGCCATCAACTTGCCCTACGGAGTTTGCTTCTATGCCGGAGCATTTTGTGGAAGATGCCATGGAGTTGCTCATATTTGCTTCCCGGATTCCAAAAGCCTTGGATGGGGTTTTGTTGGATGATTTTATGAACTTCATTATAATGTTTATGGCAAGTCCAGAATATATTAGGAACCCTTATCTAAGGGCAAAGATGGTTGAAGTCCTGAACTGCTGGATGCCCCGTAGAAGTGGATCATCTGCTACAGCGACCCTATTTGAAGGGCACCAACTATCTCTTGAGTATCTTGTGAGGAATCTCTTGAAGCTATATGTCGACATCGAGTTCACTGGCTCTCACACACAGTTCTATGACAAGTTTAATATTCGTCACAACATTGCTGAACTTCTTGAATATCTGTGGCATGTCCCTAGTCATCGAAATGCTTGGAAACAGATTGCTAAGGAAGAGGAGAAGGGTGTTTACTTGAATTTCTTAAACTTTTTGATCGATCATAGCATCTATCTTCTGGATGAAAGTCTTAACAAAATTCTTGAACACAAAGAACTGGAAGCTGAGATGTCAAACACTGCAGAATGGGAGCGCAGACCTGCTCAAGAAAGGGAGGAGAGAACCCGCCTATTCCATTCTCAAGAGAATATTATCCGAATAGATATGAAATTAGCAAATGAAGACGTTAGTATGCTGGCATTTACTACAGAACAGATTACAGCTCCTTTTCTACTTCCTGAGATGGTTGAAAGGGTGGCCAGCATGCTCAATTACTTTTTGTTGCAATTAGTAGGCCCTCAAAGAAAATCGCTTAGTTTGAAAGACCCTGAGAAATATGAATTTCGTCCAAAGCAATTGCTTAAGCAGATTGTATACATATATGTTCATTTGGCAAAGGGTGATTCAGAAAATATATTTCCAGCTGCCATCTCAAAGGATGGTCGGTCGTACAATGAACAGTTGTTTAGTGCTGCGGCGGATGTCCTAAGGAAAATTGGTGAAGATGGGAGGATCATACAAGAGTTTATCGAGTTAGGTGCAAAAGCAAAGGTTGCTGCTTCGGAGGCCATGGACACTGAAGCTACTCTTGGGGATATACCAGATGAATTCCTCGATCCAATTCAGTACACTTTAATGAAGGATCCAGTTATCTTACCTTCTTCAAGAATCACGGTAGACCGGCCTGTCATTCAAAGGCATCTTCTTAGTGATAGCTCTGATCCGTTCAACCGATCACATCTTACTGCGGACATGCTGATACCAGACAATGAATTAAAGGCAAGGATACAGGAGTTCATTAGGTCCCAAGAATCGAAGAAACACGCGGAAGACTTGAGCACGCAGAGCACCAAGGTGACGATACAAACTACAACTAGTGAAATGCTAATTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

928

Amino Acids

105.04

Weight (kDa)

5.49

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	161 - 812	1.3e-203	Ubiquitin elongating factor core
U-box	PF04564	829 - 900	4.2e-30	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15400
fragaria_vesca	FvH4_3g25920 FvH4_3g25930 FvH4_6g47550 FvH4_6g47550 FvH4_6g47550
malus_domestica	MD09G1060800.v1.1 MD17G1056200.v1.1
prunus_persica	Prupe.3G259400_v2.0.a1
pyrus_communis	pycom111g05110 pycom17g05530
rosa_chinensis	RchiOBHm_Chr2g0166651 RchiOBHm_Chr5g0047221
rosa_laevigata	RLG00000021638 RLG00000034480
rosa_multiflora	Rmu_sc0002310.1_g000029 Rmu_sc0005232.1_g000002
rosa_roxburghii	Rroxscaffold_1G00034160 Rroxscaffold_2G00084330 Rroxscaffold_2G00084640
rosa_rugosa	Rorug02G0524700 Rorug05G0235100
rosa_samantha	Rh2AG590900 Rh2BG602800 Rh2CG573700 Rh2DG613600 Rh5AG314000 Rh5BG322500 Rh5CG349700 Rh5CG349800 Rh5DG333500
rosa_wichuraiana	Rw2G049220 Rw5G029330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1538
AasI	GACNNNNNNGTC	1 cut(s)	2573
Acc36I	ACCTGC	2 cut(s)	592, 1996
AccB1I	GGYRCC	1 cut(s)	1662
AccI	GTMKAC	4 cut(s)	580, 1713, 2262, 2565
AccII	CGCG	1 cut(s)	2714
AciI	CCGC	6 cut(s)	174, 2014, 2363, 2366, 2636, 2714
AcoI	YGGCCR	1 cut(s)	2145
AcsI	RAATTY	7 cut(s)	115, 219, 841, 1867, 1926, 2228, 2495
AcuI	CTGAAG	4 cut(s)	672, 954, 1194, 2487
AfaI	GTAC	5 cut(s)	446, 976, 1155, 2339, 2516
AfiI	CCNNNNNNNGG	5 cut(s)	545, 751, 1255, 1354, 1503
AflII	CTTAAG	2 cut(s)	326, 2249
AhlI	ACTAGT	1 cut(s)	2762
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	6 cut(s)	11, 43, 101, 133, 2460, 2492
AleI	CACNNNNGTG	1 cut(s)	2741
Alw21I	GWGCWC	5 cut(s)	508, 1110, 1336, 2729, 2738
AoxI	GGCC	8 cut(s)	336, 643, 741, 1207, 2145, 2182, 2454, 2570
ApaI	GGGCCC	1 cut(s)	745
ApeKI	GCWGC	4 cut(s)	355, 2312, 2360, 2444
ApoI	RAATTY	7 cut(s)	115, 219, 841, 1867, 1926, 2228, 2495
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AseI	ATTAAT	1 cut(s)	954
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	1983
AspS9I	GGNCC	7 cut(s)	280, 337, 485, 741, 742, 2183, 2691
AsuC2I	CCSGG	1 cut(s)	1483
AsuHPI	GGTGA	6 cut(s)	410, 730, 995, 2300, 2399, 2755
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	3 cut(s)	280, 485, 2691
AxyI	CCTNAGG	1 cut(s)	2375
BaeGI	GKGCMC	3 cut(s)	230, 745, 1665
BaeI	ACNNNNGTAYC	2 cut(s)	2666, 2699
BalI	TGGCCA	1 cut(s)	2147
BamHI	GGATCC	3 cut(s)	757, 1312, 2530
BanI	GGYRCC	1 cut(s)	1662
BanII	GRGCYC	2 cut(s)	370, 745
BarI	GAAGNNNNNNTAC	2 cut(s)	1844, 1876
BauI	CACGAG	1 cut(s)	687
BbsI	GAAGAC	2 cut(s)	2076, 2724
Bbv12I	GWGCWC	5 cut(s)	508, 1110, 1336, 2729, 2738
BbvI	GCAGC	4 cut(s)	367, 2299, 2347, 2431
BceAI	ACGGC	1 cut(s)	811
BcgI	CGANNNNNNTGC	2 cut(s)	2408, 2442
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	2667
BclI	TGATCA	2 cut(s)	514, 720
BcnI	CCSGG	1 cut(s)	1483
BcuI	ACTAGT	1 cut(s)	2762
BfaI	CTAG	4 cut(s)	474, 1367, 1809, 2763
BfmI	CTRYAG	3 cut(s)	1641, 1968, 2094
BfrI	CTTAAG	2 cut(s)	326, 2249
BfuAI	ACCTGC	2 cut(s)	592, 1996
BfuI	GTATCC	1 cut(s)	2667
BisI	GCNGC	5 cut(s)	356, 2313, 2361, 2364, 2445
BlsI	GCNGC	5 cut(s)	357, 2314, 2362, 2365, 2446
BmcAI	AGTACT	1 cut(s)	976
Bme1390I	CCNGG	2 cut(s)	234, 1483
Bme18I	GGWCC	3 cut(s)	280, 485, 2691
BmgT120I	GGNCC	7 cut(s)	280, 337, 485, 741, 742, 2183, 2691
BmiI	GGNNCC	9 cut(s)	282, 486, 743, 759, 1314, 1571, 1664, 2532, 2693
BmrFI	CCNGG	2 cut(s)	234, 1483
BmsI	GCATC	6 cut(s)	826, 935, 1444, 1605, 1905, 2596
BpiI	GAAGAC	2 cut(s)	2076, 2724
Bpu10I	CCTNAGC	2 cut(s)	311, 1839
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	7 cut(s)	722, 990, 1271, 1697, 1977, 2013, 2743
BpuMI	CCSGG	1 cut(s)	1483
Bsa29I	ATCGAT	2 cut(s)	864, 1887
BsaJI	CCNNGG	7 cut(s)	233, 340, 422, 1458, 1497, 2457, 2739
BsaWI	WCCGGW	2 cut(s)	391, 1022
BsaXI	ACNNNNNCTCC	2 cut(s)	1204, 1234
Bsc4I	CCNNNNNNNGG	5 cut(s)	545, 751, 1255, 1354, 1503
Bse118I	RCCGGY	1 cut(s)	2568
Bse1I	ACTGG	4 cut(s)	1017, 1732, 1950, 2534
Bse21I	CCTNAGG	1 cut(s)	2375
Bse3DI	GCAATG	1 cut(s)	1773
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	2 cut(s)	864, 1887
BseDI	CCNNGG	7 cut(s)	233, 340, 422, 1458, 1497, 2457, 2739
BseGI	GGATG	8 cut(s)	517, 841, 1507, 1522, 1620, 1915, 2332, 2374
BseLI	CCNNNNNNNGG	5 cut(s)	545, 751, 1255, 1354, 1503
BseMI	GCAATG	1 cut(s)	1773
BseMII	CTCAG	6 cut(s)	180, 811, 1313, 1944, 2118, 2208
BseNI	ACTGG	4 cut(s)	1017, 1732, 1950, 2534
BseRI	GAGGAG	4 cut(s)	260, 320, 1862, 2018
BseSI	GKGCMC	3 cut(s)	230, 745, 1665
BseXI	GCAGC	4 cut(s)	367, 2299, 2347, 2431
Bsh1236I	CGCG	1 cut(s)	2714
Bsh1285I	CGRYCG	1 cut(s)	2336
BshFI	GGCC	8 cut(s)	338, 645, 743, 1209, 2147, 2184, 2456, 2572
BshNI	GGYRCC	1 cut(s)	1662
BshVI	ATCGAT	2 cut(s)	864, 1887
BsiEI	CGRYCG	1 cut(s)	2336
BsiHKAI	GWGCWC	5 cut(s)	508, 1110, 1336, 2729, 2738
BsiSI	CCGG	5 cut(s)	392, 1023, 1436, 1483, 2569
BslFI	GGGAC	3 cut(s)	869, 1790, 2677
BslI	CCNNNNNNNGG	5 cut(s)	545, 751, 1255, 1354, 1503
BsmFI	GGGAC	3 cut(s)	869, 1790, 2677
BsmI	GAATGC	2 cut(s)	142, 1088
BsnI	GGCC	8 cut(s)	338, 645, 743, 1209, 2147, 2184, 2456, 2572
Bsp119I	TTCGAA	1 cut(s)	125
Bsp120I	GGGCCC	1 cut(s)	741
Bsp1286I	GDGCHC	9 cut(s)	230, 370, 508, 745, 1110, 1336, 1665, 2729, 2738
Bsp19I	CCATGG	2 cut(s)	1458, 2457
BspACI	CCGC	6 cut(s)	174, 2014, 2363, 2366, 2636, 2714
BspANI	GGCC	8 cut(s)	338, 645, 743, 1209, 2147, 2184, 2456, 2572
BspCNI	CTCAG	6 cut(s)	179, 810, 1312, 1945, 2119, 2209
BspDI	ATCGAT	2 cut(s)	864, 1887
BspFNI	CGCG	1 cut(s)	2714
BspHI	TCATGA	2 cut(s)	624, 1092
BspLI	GGNNCC	9 cut(s)	282, 486, 743, 759, 1314, 1571, 1664, 2532, 2693
BspMAI	CTGCAG	1 cut(s)	1972
BspMI	ACCTGC	2 cut(s)	592, 1996
BspT104I	TTCGAA	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	1662
BspTI	CTTAAG	2 cut(s)	326, 2249
BsrDI	GCAATG	1 cut(s)	1773
BsrFI	RCCGGY	1 cut(s)	2568
BsrI	ACTGG	4 cut(s)	1017, 1732, 1950, 2534
BssAI	RCCGGY	1 cut(s)	2568
BssECI	CCNNGG	7 cut(s)	233, 340, 422, 1458, 1497, 2457, 2739
BssNAI	GTATAC	1 cut(s)	2263
BssSI	CACGAG	1 cut(s)	687
BssT1I	CCWWGG	4 cut(s)	1458, 1497, 2457, 2739
Bst1107I	GTATAC	1 cut(s)	2263
Bst2BI	CACGAG	1 cut(s)	687
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	8 cut(s)	555, 622, 887, 893, 1349, 1743, 2349, 2563
Bst6I	CTCTTC	1 cut(s)	1839
BstAFI	CTTAAG	2 cut(s)	326, 2249
BstAPI	GCANNNNNTGC	1 cut(s)	2441
BstBI	TTCGAA	1 cut(s)	125
BstC8I	GCNNGC	7 cut(s)	48, 536, 1246, 2085, 2149, 2153, 2729
BstDSI	CCRYGG	3 cut(s)	422, 1458, 2457
BstENI	CCTNNNNNAGG	1 cut(s)	1253
BstF5I	GGATG	8 cut(s)	517, 841, 1507, 1522, 1620, 1915, 2332, 2374
BstFNI	CGCG	1 cut(s)	2714
BstHHI	GCGC	1 cut(s)	1983
BstMCI	CGRYCG	1 cut(s)	2336
BstMWI	GCNNNNNNNGC	7 cut(s)	151, 823, 923, 1282, 2441, 2453, 2733
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	5 cut(s)	787, 926, 1805, 2155, 2644
BstSCI	CCNGG	2 cut(s)	232, 1481
BstSFI	CTRYAG	3 cut(s)	1641, 1968, 2094
BstSLI	GKGCMC	3 cut(s)	230, 745, 1665
BstUI	CGCG	1 cut(s)	2714
BstV1I	GCAGC	4 cut(s)	367, 2299, 2347, 2431
BstV2I	GAAGAC	2 cut(s)	2076, 2724
BstX2I	RGATCY	3 cut(s)	757, 1312, 2530
BstYI	RGATCY	3 cut(s)	757, 1312, 2530
BstZ17I	GTATAC	1 cut(s)	2263
Bsu15I	ATCGAT	2 cut(s)	864, 1887
Bsu36I	CCTNAGG	1 cut(s)	2375
BsuI	GTATCC	1 cut(s)	2667
BsuRI	GGCC	8 cut(s)	338, 645, 743, 1209, 2147, 2184, 2456, 2572
BsuTUI	ATCGAT	2 cut(s)	864, 1887
BtgI	CCRYGG	3 cut(s)	422, 1458, 2457
BtsCI	GGATG	8 cut(s)	517, 841, 1507, 1522, 1620, 1915, 2332, 2374
BtsI	GCAGTG	2 cut(s)	1057, 1965
BtsIMutI	CAGTG	9 cut(s)	230, 255, 508, 560, 805, 1057, 1725, 1965, 2463
BveI	ACCTGC	2 cut(s)	592, 1996
Cac8I	GCNNGC	7 cut(s)	48, 536, 1246, 2085, 2149, 2153, 2729
CciI	TCATGA	2 cut(s)	624, 1092
CfoI	GCGC	1 cut(s)	1983
Cfr10I	RCCGGY	1 cut(s)	2568
Cfr13I	GGNCC	7 cut(s)	280, 337, 485, 741, 742, 2183, 2691
ClaI	ATCGAT	2 cut(s)	864, 1887
CseI	GACGC	2 cut(s)	129, 575
Csp6I	GTAC	5 cut(s)	445, 975, 1154, 2338, 2515
CviQI	GTAC	5 cut(s)	445, 975, 1154, 2338, 2515
DraI	TTTAAA	2 cut(s)	1144, 1390
DrdI	GACNNNNNNGTC	1 cut(s)	2573
DseDI	GACNNNNNNGTC	1 cut(s)	2573
EaeI	YGGCCR	1 cut(s)	2145
Eam1104I	CTCTTC	1 cut(s)	1839
EarI	CTCTTC	1 cut(s)	1839
EciI	GGCGGA	1 cut(s)	2381
Eco130I	CCWWGG	4 cut(s)	1458, 1497, 2457, 2739
Eco24I	GRGCYC	2 cut(s)	370, 745
Eco47I	GGWCC	3 cut(s)	280, 485, 2691
Eco57I	CTGAAG	4 cut(s)	672, 954, 1194, 2487
Eco81I	CCTNAGG	1 cut(s)	2375
EcoNI	CCTNNNNNAGG	1 cut(s)	1253
EcoO109I	RGGNCCY	4 cut(s)	485, 741, 2183, 2691
EcoRI	GAATTC	2 cut(s)	219, 2495
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	4 cut(s)	1458, 1497, 2457, 2739
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	2 cut(s)	370, 745
ErhI	CCWWGG	4 cut(s)	1458, 1497, 2457, 2739
FalI	AAGNNNNNCTT	4 cut(s)	1167, 1199, 2460, 2492
FaqI	GGGAC	3 cut(s)	869, 1790, 2677
FauI	CCCGC	1 cut(s)	2021
FbaI	TGATCA	2 cut(s)	514, 720
FblI	GTMKAC	4 cut(s)	580, 1713, 2262, 2565
Fnu4HI	GCNGC	5 cut(s)	356, 2313, 2361, 2364, 2445
FokI	GGATG	8 cut(s)	504, 848, 1514, 1529, 1627, 1922, 2339, 2381
FriOI	GRGCYC	2 cut(s)	370, 745
Fsp4HI	GCNGC	5 cut(s)	356, 2313, 2361, 2364, 2445
FspBI	CTAG	4 cut(s)	474, 1367, 1809, 2763
GlaI	GCGC	1 cut(s)	1982
GluI	GCNGC	5 cut(s)	356, 2313, 2361, 2364, 2445
HaeIII	GGCC	8 cut(s)	338, 645, 743, 1209, 2147, 2184, 2456, 2572
HapII	CCGG	5 cut(s)	392, 1023, 1436, 1483, 2569
HgaI	GACGC	2 cut(s)	129, 575
HhaI	GCGC	1 cut(s)	1983
Hin6I	GCGC	1 cut(s)	1981
HinP1I	GCGC	1 cut(s)	1981
HincII	GTYRAC	1 cut(s)	1714
HindII	GTYRAC	1 cut(s)	1714
HindIII	AAGCTT	2 cut(s)	56, 1283
HpaII	CCGG	5 cut(s)	392, 1023, 1436, 1483, 2569
HphI	GGTGA	6 cut(s)	410, 730, 995, 2300, 2399, 2755
Hpy166II	GTNNAC	8 cut(s)	445, 581, 1714, 1725, 1861, 2263, 2517, 2566
Hpy8I	GTNNAC	8 cut(s)	445, 581, 1714, 1725, 1861, 2263, 2517, 2566
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	6 cut(s)	286, 1249, 1652, 1846, 2521, 2556
HpyCH4III	ACNGT	8 cut(s)	555, 622, 887, 893, 1349, 1743, 2349, 2563
HpyCH4IV	ACGT	1 cut(s)	2073
HpyF10VI	GCNNNNNNNGC	7 cut(s)	151, 823, 923, 1282, 2441, 2453, 2733
HpySE526I	ACGT	1 cut(s)	2073
HspAI	GCGC	1 cut(s)	1981
Ksp22I	TGATCA	2 cut(s)	514, 720
LmnI	GCTCC	4 cut(s)	307, 1438, 1978, 2116
Lsp1109I	GCAGC	4 cut(s)	367, 2299, 2347, 2431
LweI	GCATC	6 cut(s)	826, 935, 1444, 1605, 1905, 2596
MaeI	CTAG	4 cut(s)	474, 1367, 1809, 2763
MaeII	ACGT	1 cut(s)	2073
MaeIII	GTNAC	7 cut(s)	405, 629, 887, 940, 1289, 1766, 2743
MfeI	CAATTG	2 cut(s)	1226, 2243
MflI	RGATCY	3 cut(s)	757, 1312, 2530
MhlI	GDGCHC	9 cut(s)	230, 370, 508, 745, 1110, 1336, 1665, 2729, 2738
MlsI	TGGCCA	1 cut(s)	2147
MluNI	TGGCCA	1 cut(s)	2147
MlyI	GAGTC	2 cut(s)	254, 1274
MmeI	TCCRAC	2 cut(s)	1340, 1494
Mox20I	TGGCCA	1 cut(s)	2147
Mph1103I	ATGCAT	1 cut(s)	928
MroXI	GAANNNNTTC	1 cut(s)	657
MscI	TGGCCA	1 cut(s)	2147
MslI	CAYNNNNRTG	5 cut(s)	501, 1538, 1818, 2522, 2741
Msp20I	TGGCCA	1 cut(s)	2147
MspA1I	CMGCKG	1 cut(s)	2312
MspCI	CTTAAG	2 cut(s)	326, 2249
MspI	CCGG	5 cut(s)	392, 1023, 1436, 1483, 2569
MspR9I	CCNGG	2 cut(s)	234, 1483
MunI	CAATTG	2 cut(s)	1226, 2243
Mva1269I	GAATGC	2 cut(s)	142, 1088
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	2714
MwoI	GCNNNNNNNGC	7 cut(s)	151, 823, 923, 1282, 2441, 2453, 2733
NciI	CCSGG	1 cut(s)	1483
NcoI	CCATGG	2 cut(s)	1458, 2457
NlaIV	GGNNCC	9 cut(s)	282, 486, 743, 759, 1314, 1571, 1664, 2532, 2693
NmuCI	GTSAC	3 cut(s)	405, 1766, 2743
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	5 cut(s)	787, 926, 1805, 2155, 2644
NspV	TTCGAA	1 cut(s)	125
OliI	CACNNNNGTG	1 cut(s)	2741
PaeI	GCATGC	1 cut(s)	2155
PagI	TCATGA	2 cut(s)	624, 1092
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	2 cut(s)	142, 1088
PdmI	GAANNNNTTC	1 cut(s)	657
PfoI	TCCNGGA	1 cut(s)	1481
PkrI	GCNGC	5 cut(s)	357, 2314, 2362, 2365, 2446
PleI	GAGTC	2 cut(s)	254, 1273
PpsI	GAGTC	2 cut(s)	254, 1273
PpuMI	RGGWCCY	2 cut(s)	485, 2691
PshBI	ATTAAT	1 cut(s)	954
PsiI	TTATAA	1 cut(s)	1538
Psp5II	RGGWCCY	2 cut(s)	485, 2691
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	9 cut(s)	282, 486, 743, 759, 1314, 1571, 1664, 2532, 2693
PspOMI	GGGCCC	1 cut(s)	741
PspPI	GGNCC	7 cut(s)	280, 337, 485, 741, 742, 2183, 2691
PspPPI	RGGWCCY	2 cut(s)	485, 2691
PstI	CTGCAG	1 cut(s)	1972
PsuI	RGATCY	3 cut(s)	757, 1312, 2530
PvuII	CAGCTG	1 cut(s)	2312
RsaI	GTAC	5 cut(s)	446, 976, 1155, 2339, 2516
RsaNI	GTAC	5 cut(s)	445, 975, 1154, 2338, 2515
RseI	CAYNNNNRTG	5 cut(s)	501, 1538, 1818, 2522, 2741
SalI	GTCGAC	1 cut(s)	1712
SatI	GCNGC	5 cut(s)	356, 2313, 2361, 2364, 2445
Sau96I	GGNCC	7 cut(s)	280, 337, 485, 741, 742, 2183, 2691
ScaI	AGTACT	1 cut(s)	976
SchI	GAGTC	2 cut(s)	254, 1274
ScrFI	CCNGG	2 cut(s)	234, 1483
SduI	GDGCHC	9 cut(s)	230, 370, 508, 745, 1110, 1336, 1665, 2729, 2738
SfaNI	GCATC	6 cut(s)	826, 935, 1444, 1605, 1905, 2596
SfcI	CTRYAG	3 cut(s)	1641, 1968, 2094
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	3 cut(s)	280, 485, 2691
SmiMI	CAYNNNNRTG	5 cut(s)	501, 1538, 1818, 2522, 2741
SmlI	CTYRAG	9 cut(s)	326, 701, 1005, 1250, 1676, 1992, 2028, 2249, 2722
SmoI	CTYRAG	9 cut(s)	326, 701, 1005, 1250, 1676, 1992, 2028, 2249, 2722
SpeI	ACTAGT	1 cut(s)	2762
SphI	GCATGC	1 cut(s)	2155
SsiI	CCGC	6 cut(s)	174, 2014, 2363, 2366, 2636, 2714
SspI	AATATT	4 cut(s)	288, 1067, 1762, 2038
SspMI	CTAG	4 cut(s)	474, 1367, 1809, 2763
StyD4I	CCNGG	2 cut(s)	232, 1481
StyI	CCWWGG	4 cut(s)	1458, 1497, 2457, 2739
TaaI	ACNGT	8 cut(s)	555, 622, 887, 893, 1349, 1743, 2349, 2563
TaiI	ACGT	1 cut(s)	2076
TaqII	GACCGA	1 cut(s)	2322
TatI	WGTACW	4 cut(s)	444, 974, 1153, 2514
TauI	GCSGC	1 cut(s)	2366
TscAI	CASTG	9 cut(s)	230, 262, 508, 560, 805, 1057, 1732, 1972, 2470
TseFI	GTSAC	3 cut(s)	405, 1766, 2743
TseI	GCWGC	4 cut(s)	355, 2312, 2360, 2444
Tsp45I	GTSAC	3 cut(s)	405, 1766, 2743
TspGWI	ACGGA	2 cut(s)	1433, 2601
TspRI	CASTG	9 cut(s)	230, 262, 508, 560, 805, 1057, 1732, 1972, 2470
Vha464I	CTTAAG	2 cut(s)	326, 2249
VpaK11BI	GGWCC	3 cut(s)	280, 485, 2691
VspI	ATTAAT	1 cut(s)	954
XagI	CCTNNNNNAGG	1 cut(s)	1253
XapI	RAATTY	7 cut(s)	115, 219, 841, 1867, 1926, 2228, 2495
XceI	RCATGY	5 cut(s)	787, 926, 1805, 2155, 2644
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	4 cut(s)	580, 1713, 2262, 2565
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	4 cut(s)	474, 1367, 1809, 2763
ZrmI	AGTACT	1 cut(s)	976
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.