Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003119

Physical Location & Seq

Genomic Coordinates Forward (+)

4341437 .. 4342056

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGGCGTGGACGTGGAGTCAGCTGTGGTGGTGGACAAAGCTCTTTGGGGTATTTGTTTGGAGGTGGAGAGACTGTTAATGCTAACAAAACCCCAAAAACTACTAACAACACACCACCATCACCTCAGAATGCTAGCCCAGTTCCTGCTCCAGCTCCAGCTCCTGCTTCATCACCGATCGATAAGCAGCTTCCAGCCGGCATTCATAGCAAGTGTACGAACAATTACTTCCGAGTTGATGGCCAGAACTGCGGAAATTTCATCACGGATCGTCCATCGACCAAGGTTCACTCCGCTCCCGGCGGCGGATCATCCCTTGGCTACTTGTTTGGTGGTGGGAGTGGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

11.58

Weight (kDa)

9.45

Isoelectric Point (pI)

63.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69230 AT1G69230
fragaria_vesca	FvH4_5g13660 FvH4_6g46690
malus_domestica	MD06G1203200.v1.1 MD09G1068700.v1.1 MD14G1213800.v1.1 MD17G1061700.v1.1
prunus_persica	Prupe.3G252100_v2.0.a1 Prupe.5G206800_v2.0.a1 Prupe.5G206800_v2.0.a1
pyrus_communis	pycom06g18110 pycom17g06150
rosa_chinensis	RchiOBHm_Chr2g0165561 RchiOBHm_Chr7g0183301
rosa_laevigata	RLG00000005059 RLG00000021539
rosa_multiflora	Rmu_sc0008602.1_g000007 Rmu_sc0008744.1_g000002 Rmu_sc0016601.1_g000008
rosa_roxburghii	Rroxscaffold_3G00270590
rosa_rugosa	Rorug02G0516100 Rorug06G0456000 Rorug06G0456100 Rorug06G0456200 Rorug06G0456300
rosa_samantha	Rh2AG582100 Rh2BG594300 Rh2CG564200 Rh2DG604200 Rh7AG057900 Rh7BG057700 Rh7CG059300 Rh7DG057500
rosa_wichuraiana	Rw2G048400 Rw2G048550 Rw7G004750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	296
AciI	CCGC	4 cut(s)	252, 294, 303, 306
AclWI	GGATC	2 cut(s)	276, 316
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	305
AhdI	GACNNNNNGTC	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	14
AluBI	AGCT	5 cut(s)	24, 42, 155, 161, 190
AluI	AGCT	5 cut(s)	24, 42, 155, 161, 190
Alw26I	GTCTC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	276, 316
AlwNI	CAGNNNCTG	2 cut(s)	146, 164
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	187
ApoI	RAATTY	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	114, 165
AsuNHI	GCTAGC	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	3 cut(s)	127, 233, 283
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	2 cut(s)	188, 304
BlsI	GCNGC	2 cut(s)	189, 305
Bme1390I	CCNGG	1 cut(s)	300
BmeRI	GACNNNNNGTC	1 cut(s)	17
BmgBI	CACGTC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	300
BmrI	ACTGGG	1 cut(s)	134
BmtI	GCTAGC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	134
BpmI	CTGGAG	2 cut(s)	135, 141
BpuMI	CCSGG	1 cut(s)	300
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	282, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	282, 316
BseGI	GGATG	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	199
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	198, 300
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	136, 201
BsnI	GGCC	1 cut(s)	243
Bsp143I	GATC	3 cut(s)	177, 268, 308
BspACI	CCGC	4 cut(s)	252, 294, 303, 306
BspANI	GGCC	1 cut(s)	243
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	1 cut(s)	180
BspOI	GCTAGC	1 cut(s)	138
BspPI	GGATC	2 cut(s)	276, 316
BsrBI	CCGCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	282, 316
BssMI	GATC	3 cut(s)	177, 268, 308
BssT1I	CCWWGG	2 cut(s)	282, 316
Bst4CI	ACNGT	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	136, 199
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	3 cut(s)	180, 271, 311
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	3 cut(s)	177, 268, 308
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 249
BstSCI	CCNGG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	199
Bsu15I	ATCGAT	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	136, 199
CaiI	CAGNNNCTG	2 cut(s)	146, 164
Cfr10I	RCCGGY	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	216
CviJI	RGCY	9 cut(s)	24, 42, 138, 155, 161, 190, 197, 243, 321
CviKI_1	RGCY	9 cut(s)	24, 42, 138, 155, 161, 190, 197, 243, 321
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	179, 270, 310
DpnII	GATC	3 cut(s)	177, 268, 308
DriI	GACNNNNNGTC	1 cut(s)	17
EaeI	YGGCCR	1 cut(s)	241
Eam1105I	GACNNNNNGTC	1 cut(s)	17
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	282, 316
EcoT14I	CCWWGG	2 cut(s)	282, 316
ErhI	CCWWGG	2 cut(s)	282, 316
FaiI	YATR	1 cut(s)	207
Fnu4HI	GCNGC	2 cut(s)	188, 304
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	2 cut(s)	188, 304
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	2 cut(s)	188, 304
GsuI	CTGGAG	2 cut(s)	135, 141
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	2 cut(s)	198, 300
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	2 cut(s)	198, 300
HphI	GGTGA	2 cut(s)	114, 165
Hpy166II	GTNNAC	4 cut(s)	11, 35, 216, 289
Hpy188I	TCNGA	2 cut(s)	129, 233
Hpy8I	GTNNAC	4 cut(s)	11, 35, 216, 289
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 249
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	1 cut(s)	13
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	177, 268, 308
LmnI	GCTCC	4 cut(s)	154, 160, 166, 301
LpnPI	CCDG	9 cut(s)	153, 159, 165, 171, 177, 207, 211, 257, 313
Lsp1109I	GCAGC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	13
MalI	GATC	3 cut(s)	179, 270, 310
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	3 cut(s)	177, 268, 308
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	223, 256
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	56, 135
Mox20I	TGGCCA	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	1 cut(s)	78
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	2 cut(s)	198, 300
MspR9I	CCNGG	1 cut(s)	300
Mva1269I	GAATGC	2 cut(s)	136, 201
MwoI	GCNNNNNNNGC	2 cut(s)	207, 249
NaeI	GCCGGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	300
NdeII	GATC	3 cut(s)	177, 268, 308
NgoMIV	GCCGGC	1 cut(s)	197
NheI	GCTAGC	1 cut(s)	134
PctI	GAATGC	2 cut(s)	136, 201
PdiI	GCCGGC	1 cut(s)	199
PkrI	GCNGC	2 cut(s)	189, 305
Ple19I	CGATCG	1 cut(s)	180
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PstNI	CAGNNNCTG	2 cut(s)	146, 164
PvuI	CGATCG	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	2 cut(s)	188, 304
Sau3AI	GATC	3 cut(s)	177, 268, 308
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	300
SetI	ASST	9 cut(s)	16, 26, 44, 67, 127, 157, 163, 192, 288
Sse9I	AATT	2 cut(s)	223, 256
SsiI	CCGC	4 cut(s)	252, 294, 303, 306
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	282, 316
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	180, 278
TasI	AATT	2 cut(s)	223, 256
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	159, 194, 250
TspGWI	ACGGA	1 cut(s)	281
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.