pycom17g11530

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
9110062 .. 9112790
2729 bp
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UTR
Exon/CDS
Intron
pycom17g11530.4

Sequence Viewer

Length: 1446 bp
ATGCAAGGGCGGGATATGATCGGTCGCGCTCGAACAGGAACAGGGAAAACTCTTGCGTTTGGGATACCCATCTTGGATAAAATCTTTAAATACAATGCCATACATGGTCGTGGAAAGAATCCTTTGGCTTTGGTTTTGGCCCCGACAAGAGAACTCGCAAAGCAAGTTGAGAAGGAATTTCATGATACAGCACCTGGTTTGGATACAATCTGTGTCTATGGTGGTACCCCCATTTCAAGTCAAATGAGAGCGCTTGACTATGGAGTTGATGTGGCTGTTGGCACGCCTGGTCGTGTAATTGATCTTATCAACAGGGGAGCCCTGAATTTAGAGGAAGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTCCAGGTGGGATTCCAGGAGGATGTAGAGATAATCTTAGAGAGGGTGCCAAAGAAACGTCAGACGTTGTTGTTTTCTGCAACAATGCCTGGTTGGATTAGAAAGCTTAGTCAGAATTATTTAAAAGATCCAGCCGTTATTGATCTTGTTGGGGATTCTGATCAAAAATTGGCAGATGGAATTTCTCTATTCTCGATTGCATCAGACTCATATGGAAGAGCATCAATTATCGGACCACTTATAACGGAACATGCAAAAGGAGGAAAGACTATTGTTTTCACTCAGACAAAGCGTGATGCTGATCGATTGTCGTATGCCATGTCAAGAAGCTTTAGATGCGAGGCTTTGCATGGGGATATTTCACAAAGCCAGAGGGAAAGGACCCTTGCAGGTTTTCGAGATGGGAATTTCAATATTTTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATCTGGTGATACATTATGAGCTGCCAAATAATCCAGAAATATTTGTTCACCGGTCTGGCCGAACAGGTCGTGCTGGGAAGAAAGGAAGTGCTATTCTTGTTTACACACAGGATCAATCCAGGGCTGTTAGGACTATCGAGAGAGAAGTAGGATGCAAATTTACAGAGCTCCCCCGGATTGCTGTTGACAGCAAAAGTATAGACATGATGCCAGACATGGGTAGAGATCGATTCACGAAGGGTAGTCGATTTGGTGGTCCATCGGGACCAGGTTTTAGCCGTTCTGGTGGGTTTGGTCGTTCCAGTAGCTATGGTGATTCTTCTAGTCAGATGGGTAGATCTAGTGGACCTCGTCCCGGTCGTTTTGGTTCCTATGGTGATTCTCAATCTGGAGGTGGATTTTCCGGATCTAGCTCAAACCGCGGAGGAAACTTTGGTAACTCAGGTTTCGGTCGTTCAAGTGGTTTCGGTAATTCTGACCGTTCAGGAGGTTTTGGTAGTTCTGATCGTTCAAGTAATTTCGGAGGGTTTGGTAGCTCTGATCGTTCTGGTGGTTCTAGGAACAATAATTCTAGCCGTTTTGGCAGCTTTGGGGATGACAAGTTTTGA

Protein Analysis

482

Amino Acids

51.69

Weight (kDa)

9.46

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
Acc36I ACCTGC 1 cut(s) 752
Acc65I GGTACC 1 cut(s) 224
AccB1I GGYRCC 2 cut(s) 224, 418
AccII CGCG 2 cut(s) 27, 1260
AccIII TCCGGA 1 cut(s) 1241
AciI CCGC 3 cut(s) 10, 1258, 1260
AclWI GGATC 3 cut(s) 494, 957, 1252
AcoI YGGCCR 1 cut(s) 895
AcsI RAATTY 5 cut(s) 176, 325, 552, 778, 995
AfaI GTAC 2 cut(s) 226, 828
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 1055, 1193
AgeI ACCGGT 1 cut(s) 888
AgsI TTSAA 4 cut(s) 237, 784, 1296, 1350
AjnI CCWGG 7 cut(s) 193, 286, 375, 387, 460, 956, 1105
AluBI AGCT 9 cut(s) 362, 478, 702, 859, 1006, 1146, 1251, 1374, 1425
AluI AGCT 9 cut(s) 362, 478, 702, 859, 1006, 1146, 1251, 1374, 1425
Alw21I GWGCWC 1 cut(s) 1008
AlwI GGATC 3 cut(s) 494, 957, 1252
AlwNI CAGNNNCTG 1 cut(s) 194
Aor13HI TCCGGA 1 cut(s) 1241
Aor51HI AGCGCT 1 cut(s) 252
AoxI GGCC 2 cut(s) 138, 895
ApeKI GCWGC 3 cut(s) 809, 859, 1422
ApoI RAATTY 5 cut(s) 176, 325, 552, 778, 995
AsiGI ACCGGT 1 cut(s) 888
Asp718I GGTACC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 29, 253
AspS9I GGNCC 6 cut(s) 139, 605, 753, 1094, 1103, 1184
AsuC2I CCSGG 2 cut(s) 1012, 1194
AsuHPI GGTGA 4 cut(s) 856, 878, 1163, 1226
AvaII GGWCC 5 cut(s) 605, 753, 1094, 1103, 1184
BanI GGYRCC 2 cut(s) 224, 418
BanII GRGCYC 2 cut(s) 322, 1008
BauI CACGAG 1 cut(s) 813
Bbv12I GWGCWC 1 cut(s) 1008
BbvI GCAGC 3 cut(s) 796, 846, 1434
BccI CCATC 5 cut(s) 77, 542, 767, 1105, 1162
BceAI ACGGC 3 cut(s) 491, 1101, 1398
BciT130I CCWGG 7 cut(s) 195, 288, 377, 389, 462, 958, 1107
BciVI GTATCC 2 cut(s) 57, 196
BclI TGATCA 2 cut(s) 364, 532
BcnI CCSGG 2 cut(s) 1012, 1194
BfaI CTAG 5 cut(s) 1161, 1179, 1248, 1395, 1410
BfoI RGCGCY 1 cut(s) 254
BfuAI ACCTGC 1 cut(s) 752
BfuI GTATCC 2 cut(s) 57, 196
BglI GCCNNNNNGGC 1 cut(s) 1419
BglII AGATCT 1 cut(s) 1175
BisI GCNGC 3 cut(s) 810, 860, 1423
BlsI GCNGC 3 cut(s) 811, 861, 1424
Bme1390I CCNGG 9 cut(s) 195, 288, 377, 389, 462, 958, 1012, 1107, 1194
Bme18I GGWCC 5 cut(s) 605, 753, 1094, 1103, 1184
BmgT120I GGNCC 6 cut(s) 139, 605, 753, 1094, 1103, 1184
BmiI GGNNCC 7 cut(s) 141, 226, 319, 420, 755, 1104, 1207
BmrFI CCNGG 9 cut(s) 195, 288, 377, 389, 462, 958, 1012, 1107, 1194
BmsI GCATC 7 cut(s) 360, 581, 602, 658, 698, 980, 1035
BpmI CTGGAG 2 cut(s) 359, 1248
BpuMI CCSGG 2 cut(s) 1012, 1194
Bsa29I ATCGAT 2 cut(s) 676, 1066
BsaBI GATNNNNATC 3 cut(s) 68, 531, 672
BsaJI CCNNGG 3 cut(s) 957, 1010, 1258
BsaWI WCCGGW 2 cut(s) 888, 1241
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 1055, 1193
Bse118I RCCGGY 1 cut(s) 888
Bse1I ACTGG 1 cut(s) 1140
Bse8I GATNNNNATC 3 cut(s) 68, 531, 672
BseAI TCCGGA 1 cut(s) 1241
BseBI CCWGG 7 cut(s) 195, 288, 377, 389, 462, 958, 1107
BseCI ATCGAT 2 cut(s) 676, 1066
BseDI CCNNGG 3 cut(s) 957, 1010, 1258
BseGI GGATG 3 cut(s) 400, 995, 1438
BseJI GATNNNNATC 3 cut(s) 68, 531, 672
BseLI CCNNNNNNNGG 2 cut(s) 1055, 1193
BseMII CTCAG 2 cut(s) 668, 1293
BseNI ACTGG 1 cut(s) 1140
BseXI GCAGC 3 cut(s) 796, 846, 1434
BseYI CCCAGC 1 cut(s) 911
Bsh1236I CGCG 2 cut(s) 27, 1260
Bsh1285I CGRYCG 3 cut(s) 25, 1198, 1291
BshFI GGCC 2 cut(s) 140, 897
BshNI GGYRCC 2 cut(s) 224, 418
BshTI ACCGGT 1 cut(s) 888
BshVI ATCGAT 2 cut(s) 676, 1066
BsiEI CGRYCG 3 cut(s) 25, 1198, 1291
BsiHKAI GWGCWC 1 cut(s) 1008
BsiSI CCGG 4 cut(s) 889, 1012, 1194, 1242
BslFI GGGAC 2 cut(s) 1116, 1176
BslI CCNNNNNNNGG 2 cut(s) 1055, 1193
BsmFI GGGAC 2 cut(s) 1116, 1176
BsnI GGCC 2 cut(s) 140, 897
Bsp1286I GDGCHC 2 cut(s) 322, 1008
Bsp13I TCCGGA 1 cut(s) 1241
BspACI CCGC 3 cut(s) 10, 1258, 1260
BspANI GGCC 2 cut(s) 140, 897
BspCNI CTCAG 2 cut(s) 667, 1292
BspDI ATCGAT 2 cut(s) 676, 1066
BspEI TCCGGA 1 cut(s) 1241
BspFNI CGCG 2 cut(s) 27, 1260
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 7 cut(s) 141, 226, 319, 420, 755, 1104, 1207
BspMI ACCTGC 1 cut(s) 752
BspPI GGATC 3 cut(s) 494, 957, 1252
BspQI GCTCTTC 1 cut(s) 583
BspT107I GGYRCC 2 cut(s) 224, 418
BsrFI RCCGGY 1 cut(s) 888
BsrI ACTGG 1 cut(s) 1140
BssAI RCCGGY 1 cut(s) 888
BssECI CCNNGG 3 cut(s) 957, 1010, 1258
BssSI CACGAG 1 cut(s) 813
Bst2BI CACGAG 1 cut(s) 813
Bst2UI CCWGG 7 cut(s) 195, 288, 377, 389, 462, 958, 1107
Bst4CI ACNGT 1 cut(s) 1319
Bst6I CTCTTC 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 4 cut(s) 409, 479, 654, 1279
BstDSI CCRYGG 1 cut(s) 1258
BstF5I GGATG 3 cut(s) 400, 995, 1438
BstFNI CGCG 2 cut(s) 27, 1260
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 2 cut(s) 29, 253
BstMCI CGRYCG 3 cut(s) 25, 1198, 1291
BstMWI GCNNNNNNNGC 3 cut(s) 708, 1257, 1419
BstNI CCWGG 7 cut(s) 195, 288, 377, 389, 462, 958, 1107
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 9 cut(s) 193, 286, 375, 387, 460, 956, 1010, 1105, 1192
BstUI CGCG 2 cut(s) 27, 1260
BstV1I GCAGC 3 cut(s) 796, 846, 1434
BstX2I RGATCY 3 cut(s) 499, 1175, 1244
BstYI RGATCY 3 cut(s) 499, 1175, 1244
Bsu15I ATCGAT 2 cut(s) 676, 1066
BsuI GTATCC 2 cut(s) 57, 196
BsuRI GGCC 2 cut(s) 140, 897
BsuTUI ATCGAT 2 cut(s) 676, 1066
BtgI CCRYGG 1 cut(s) 1258
BtsCI GGATG 3 cut(s) 400, 995, 1438
BtsIMutI CAGTG 1 cut(s) 798
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 1 cut(s) 284
CaiI CAGNNNCTG 1 cut(s) 194
CciI TCATGA 1 cut(s) 181
CfoI GCGC 2 cut(s) 29, 253
Cfr10I RCCGGY 1 cut(s) 888
Cfr13I GGNCC 6 cut(s) 139, 605, 753, 1094, 1103, 1184
Cfr42I CCGCGG 1 cut(s) 1261
ClaI ATCGAT 2 cut(s) 676, 1066
CsiI ACCWGGT 2 cut(s) 193, 1105
Csp6I GTAC 2 cut(s) 225, 827
CspAI ACCGGT 1 cut(s) 888
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 7 cut(s) 104, 182, 623, 691, 722, 1042, 1054
CviQI GTAC 2 cut(s) 225, 827
DdeI CTNAG 4 cut(s) 409, 479, 654, 1279
DraI TTTAAA 2 cut(s) 88, 495
EaeI YGGCCR 1 cut(s) 895
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
Ecl136II GAGCTC 1 cut(s) 1006
Eco24I GRGCYC 2 cut(s) 322, 1008
Eco47I GGWCC 5 cut(s) 605, 753, 1094, 1103, 1184
Eco47III AGCGCT 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 1006
EcoICRI GAGCTC 1 cut(s) 1006
EcoO109I RGGNCCY 1 cut(s) 753
EcoRII CCWGG 7 cut(s) 193, 286, 375, 387, 460, 956, 1105
EcoT38I GRGCYC 2 cut(s) 322, 1008
FaeI CATG 7 cut(s) 107, 185, 626, 694, 725, 1045, 1057
FaqI GGGAC 2 cut(s) 1116, 1176
FatI CATG 7 cut(s) 103, 181, 622, 690, 721, 1041, 1053
FauI CCCGC 1 cut(s) 3
FauNDI CATATG 1 cut(s) 583
FbaI TGATCA 2 cut(s) 364, 532
Fnu4HI GCNGC 3 cut(s) 810, 860, 1423
FokI GGATG 2 cut(s) 407, 1002
FriOI GRGCYC 2 cut(s) 322, 1008
Fsp4HI GCNGC 3 cut(s) 810, 860, 1423
FspBI CTAG 5 cut(s) 1161, 1179, 1248, 1395, 1410
GlaI GCGC 2 cut(s) 28, 252
GluI GCNGC 3 cut(s) 810, 860, 1423
GsaI CCCAGC 1 cut(s) 915
GsuI CTGGAG 2 cut(s) 359, 1248
HaeII RGCGCY 1 cut(s) 254
HaeIII GGCC 2 cut(s) 140, 897
HapII CCGG 4 cut(s) 889, 1012, 1194, 1242
HhaI GCGC 2 cut(s) 29, 253
Hin1II CATG 7 cut(s) 107, 185, 626, 694, 725, 1045, 1057
Hin6I GCGC 2 cut(s) 27, 251
HinP1I GCGC 2 cut(s) 27, 251
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 2 cut(s) 476, 700
HinfI GANTC 7 cut(s) 118, 384, 527, 578, 1068, 1154, 1217
HpaII CCGG 4 cut(s) 889, 1012, 1194, 1242
HphI GGTGA 4 cut(s) 856, 878, 1163, 1226
Hpy166II GTNNAC 4 cut(s) 886, 940, 1024, 1184
Hpy8I GTNNAC 4 cut(s) 886, 940, 1024, 1184
HpyAV CCTTC 2 cut(s) 166, 1069
HpyCH4III ACNGT 1 cut(s) 1319
HpyCH4IV ACGT 2 cut(s) 430, 437
HpyCH4V TGCA 7 cut(s) 4, 452, 572, 626, 721, 761, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 708, 1257, 1419
HpyF3I CTNAG 4 cut(s) 409, 479, 654, 1279
HpySE526I ACGT 2 cut(s) 430, 437
Hsp92II CATG 7 cut(s) 107, 185, 626, 694, 725, 1045, 1057
HspAI GCGC 2 cut(s) 27, 251
Kpn2I TCCGGA 1 cut(s) 1241
KpnI GGTACC 1 cut(s) 228
Ksp22I TGATCA 2 cut(s) 364, 532
KspI CCGCGG 1 cut(s) 1261
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 3 cut(s) 317, 378, 1011
Lsp1109I GCAGC 3 cut(s) 796, 846, 1434
LweI GCATC 7 cut(s) 360, 581, 602, 658, 698, 980, 1035
MabI ACCWGGT 2 cut(s) 193, 1105
MaeI CTAG 5 cut(s) 1161, 1179, 1248, 1395, 1410
MaeII ACGT 2 cut(s) 430, 437
MaeIII GTNAC 1 cut(s) 1274
MboII GAAGA 3 cut(s) 600, 928, 1149
MflI RGATCY 3 cut(s) 499, 1175, 1244
MhlI GDGCHC 2 cut(s) 322, 1008
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 446
MroI TCCGGA 1 cut(s) 1241
MseI TTAA 2 cut(s) 87, 494
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 1260
MspI CCGG 4 cut(s) 889, 1012, 1194, 1242
MspR9I CCNGG 9 cut(s) 195, 288, 377, 389, 462, 958, 1012, 1107, 1194
MvaI CCWGG 7 cut(s) 195, 288, 377, 389, 462, 958, 1107
MvnI CGCG 2 cut(s) 27, 1260
MwoI GCNNNNNNNGC 3 cut(s) 708, 1257, 1419
NciI CCSGG 2 cut(s) 1012, 1194
NdeI CATATG 1 cut(s) 583
NlaIII CATG 7 cut(s) 107, 185, 626, 694, 725, 1045, 1057
NlaIV GGNNCC 7 cut(s) 141, 226, 319, 420, 755, 1104, 1207
NspI RCATGY 1 cut(s) 626
PagI TCATGA 1 cut(s) 181
PciSI GCTCTTC 1 cut(s) 583
PcsI WCGNNNNNNNCGW 1 cut(s) 1195
PfeI GAWTC 6 cut(s) 118, 384, 527, 1068, 1154, 1217
PflFI GACNNNGTC 1 cut(s) 1188
PfoI TCCNGGA 1 cut(s) 387
PinAI ACCGGT 1 cut(s) 888
PkrI GCNGC 3 cut(s) 811, 861, 1424
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
PpuMI RGGWCCY 1 cut(s) 753
PsiI TTATAA 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 1008
Psp5II RGGWCCY 1 cut(s) 753
Psp6I CCWGG 7 cut(s) 193, 286, 375, 387, 460, 956, 1105
PspFI CCCAGC 1 cut(s) 911
PspGI CCWGG 7 cut(s) 193, 286, 375, 387, 460, 956, 1105
PspN4I GGNNCC 7 cut(s) 141, 226, 319, 420, 755, 1104, 1207
PspPI GGNCC 6 cut(s) 139, 605, 753, 1094, 1103, 1184
PspPPI RGGWCCY 1 cut(s) 753
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 3 cut(s) 499, 1175, 1244
PsyI GACNNNGTC 1 cut(s) 1188
RsaI GTAC 2 cut(s) 226, 828
RsaNI GTAC 2 cut(s) 225, 827
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 1008
SacII CCGCGG 1 cut(s) 1261
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 2 cut(s) 87, 494
SatI GCNGC 3 cut(s) 810, 860, 1423
Sau96I GGNCC 6 cut(s) 139, 605, 753, 1094, 1103, 1184
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 9 cut(s) 195, 288, 377, 389, 462, 958, 1012, 1107, 1194
SduI GDGCHC 2 cut(s) 322, 1008
SexAI ACCWGGT 2 cut(s) 193, 1105
SfaNI GCATC 7 cut(s) 360, 581, 602, 658, 698, 980, 1035
Sfr303I CCGCGG 1 cut(s) 1261
SgrBI CCGCGG 1 cut(s) 1261
SinI GGWCC 5 cut(s) 605, 753, 1094, 1103, 1184
SmiMI CAYNNNNRTG 1 cut(s) 108
SsiI CCGC 3 cut(s) 10, 1258, 1260
SspI AATATT 2 cut(s) 787, 879
SspMI CTAG 5 cut(s) 1161, 1179, 1248, 1395, 1410
SstI GAGCTC 1 cut(s) 1008
StyD4I CCNGG 9 cut(s) 193, 286, 375, 387, 460, 956, 1010, 1105, 1192
TaaI ACNGT 1 cut(s) 1319
TaiI ACGT 2 cut(s) 433, 440
TaqI TCGA 7 cut(s) 31, 566, 676, 769, 975, 1066, 1084
TaqII GACCGA 2 cut(s) 11, 1277
TfiI GAWTC 6 cut(s) 118, 384, 527, 1068, 1154, 1217
Tru1I TTAA 2 cut(s) 87, 494
Tru9I TTAA 2 cut(s) 87, 494
TscAI CASTG 1 cut(s) 805
TseI GCWGC 3 cut(s) 809, 859, 1422
TspDTI ATGAA 2 cut(s) 170, 372
TspGWI ACGGA 1 cut(s) 632
TspRI CASTG 1 cut(s) 805
Tth111I GACNNNGTC 1 cut(s) 1188
VpaK11BI GGWCC 5 cut(s) 605, 753, 1094, 1103, 1184
XapI RAATTY 5 cut(s) 176, 325, 552, 778, 995
XceI RCATGY 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XspI CTAG 5 cut(s) 1161, 1179, 1248, 1395, 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.