Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

71889133 .. 71892444

Gene Structure 3312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52381

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCTTAAAGTGGGATTTCAGGAGGCTGTTGAGACAATCTTAAAGAGCTTGCCAAAGAAACGTCAGACCCTGATGTTCTCTGCAACAATGCCGCCTTTCATTAGAAGTCTTACTCAGAAGTACCTAAATAATCCAGAATCCAGCAGAAACAATTTTGTTGGGGACAATGATCAGAAATTAGCAGACGGAATTTCCCTGTATTCTATTGTTGCGGAATCATATGGAAAAGCATCGATCCTTGGACCACTTATAACAGAACATGTAAAAGGAGGGAAGTGCATTATTTTTACTCAGAGAAAACGTGATGCAGATAATTTGGCATATGCCCTGTCAAGAAGCCATAAATGTGAGGCTTTGCACGGGGATATTTCACAACAGCAGAGGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATCTGGTGATACACTATGAGCTTCCAAACAATTCAGAGATATTTGTTCATCGGTCAGGGCGAACAGGTCGTGCTGGGAAGAAAGAAAGTGCTATCCTGATTTACTCACAAAATCAGGCCAGGAACGTCCAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCTCCCCCGGATTGCTGTTGATAGCAGCAGTGTGAGCATGTTCTCTGACAGAGGTAGTAGCGGTGGTCATTTTGGTGGTTCCGGGGGATCTGGATATGGTCGTCCAGCAAACCGAGGTGGAAACTTTGGTAATTCAGGTTTTGGCCATTCTGGTGGTTTTGGTGGTTCTGACCGTTCCAATGGTTTTGGAGGGTTTGGTGGTTCAGACCATTCAAGCGGTTTTGGTGATTCAGACCGTTCAAGTGGTTTTGGAGGGTTTGGTAATTCTGATCGTTCAAGTGGCCGTTCAGGTGGGTTTGGAGGTCGTTCCGGTGGTTCTAGGGGCTTTGGTGGGAATAGTTCTAGCCGGTTCGGAAGCTTTGGGAAAGACAATGGTTTCACGGGGTTTGGAAATTCTGACTGTTCAAGTGGTTCGGGAGGGTTTGGTAGTTCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

360

Amino Acids

37.96

Weight (kDa)

9.48

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	76 - 184	9.2e-33	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AccII	CGCG	1 cut(s)	618
AciI	CCGC	4 cut(s)	92, 212, 702, 858
AclWI	GGATC	2 cut(s)	229, 736
AcoI	YGGCCR	2 cut(s)	784, 922
AcsI	RAATTY	2 cut(s)	189, 1033
AfaI	GTAC	2 cut(s)	122, 465
AflIII	ACRYGT	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	614, 855, 882, 918, 1047
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	4 cut(s)	48, 496, 643, 999
AluI	AGCT	4 cut(s)	48, 496, 643, 999
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	229, 736
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	3 cut(s)	591, 784, 922
ApeKI	GCWGC	2 cut(s)	446, 666
ApoI	RAATTY	2 cut(s)	189, 1033
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	649, 724
AsuHPI	GGTGA	2 cut(s)	493, 878
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	786
BanII	GRGCYC	1 cut(s)	645
BauI	CACGAG	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	433, 678
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	909
BciT130I	CCWGG	1 cut(s)	595
BclI	TGATCA	1 cut(s)	169
BcnI	CCSGG	2 cut(s)	649, 724
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	960, 984
BisI	GCNGC	3 cut(s)	92, 447, 667
BlsI	GCNGC	3 cut(s)	93, 448, 668
Bme1390I	CCNGG	3 cut(s)	595, 649, 724
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	721
BmrFI	CCNGG	3 cut(s)	595, 649, 724
BmsI	GCATC	3 cut(s)	239, 295, 617
BpuMI	CCSGG	2 cut(s)	649, 724
Bsa29I	ATCGAT	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	238, 647, 723, 754
BsaWI	WCCGGW	1 cut(s)	950
Bse118I	RCCGGY	1 cut(s)	987
BseBI	CCWGG	1 cut(s)	595
BseCI	ATCGAT	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	238, 647, 723, 754
BseGI	GGATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	128, 305
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	2 cut(s)	433, 678
BseYI	CCCAGC	1 cut(s)	548
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	3 cut(s)	593, 786, 924
BshVI	ATCGAT	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	645
BsiSI	CCGG	4 cut(s)	649, 723, 951, 988
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	593, 786, 924
Bsp1286I	GDGCHC	2 cut(s)	394, 645
Bsp143I	GATC	5 cut(s)	169, 234, 475, 728, 910
BspACI	CCGC	4 cut(s)	92, 212, 702, 858
BspANI	GGCC	3 cut(s)	593, 786, 924
BspCNI	CTCAG	2 cut(s)	127, 304
BspDI	ATCGAT	1 cut(s)	233
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	1 cut(s)	721
BspPI	GGATC	2 cut(s)	229, 736
BsrFI	RCCGGY	1 cut(s)	987
BssAI	RCCGGY	1 cut(s)	987
BssECI	CCNNGG	4 cut(s)	238, 647, 723, 754
BssMI	GATC	5 cut(s)	169, 234, 475, 728, 910
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	450
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	3 cut(s)	815, 878, 1043
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	114, 291
BstF5I	GGATG	1 cut(s)	632
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	5 cut(s)	172, 237, 478, 731, 913
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	5 cut(s)	169, 234, 475, 728, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	675
BstNI	CCWGG	1 cut(s)	595
BstNSI	RCATGY	2 cut(s)	263, 682
BstSCI	CCNGG	3 cut(s)	593, 647, 722
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	433, 678
BstX2I	RGATCY	1 cut(s)	728
BstXI	CCANNNNNNTGG	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	728
Bsu15I	ATCGAT	1 cut(s)	233
BsuRI	GGCC	3 cut(s)	593, 786, 924
BsuTUI	ATCGAT	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	1 cut(s)	632
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	987
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	121, 464
CviAII	CATG	2 cut(s)	260, 679
CviQI	GTAC	2 cut(s)	121, 464
DdeI	CTNAG	2 cut(s)	114, 291
DpnI	GATC	5 cut(s)	171, 236, 477, 730, 912
DpnII	GATC	5 cut(s)	169, 234, 475, 728, 910
EaeI	YGGCCR	2 cut(s)	784, 922
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	1 cut(s)	643
EcoICRI	GAGCTC	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	263, 682
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	259, 678
FauNDI	CATATG	2 cut(s)	220, 322
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	3 cut(s)	92, 447, 667
FokI	GGATG	1 cut(s)	639
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	3 cut(s)	92, 447, 667
FspBI	CTAG	2 cut(s)	960, 984
GluI	GCNGC	3 cut(s)	92, 447, 667
GsaI	CCCAGC	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	593, 786, 924
HapII	CCGG	4 cut(s)	649, 723, 951, 988
Hin1II	CATG	2 cut(s)	263, 682
HindIII	AAGCTT	1 cut(s)	997
HinfI	GANTC	5 cut(s)	137, 215, 610, 633, 869
HpaII	CCGG	4 cut(s)	649, 723, 951, 988
HphI	GGTGA	2 cut(s)	493, 878
Hpy188III	TCNNGA	6 cut(s)	20, 134, 333, 571, 732, 1056
HpyCH4III	ACNGT	3 cut(s)	815, 878, 1043
HpyCH4IV	ACGT	3 cut(s)	61, 301, 600
HpyCH4V	TGCA	6 cut(s)	83, 279, 308, 358, 434, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	675
HpyF3I	CTNAG	2 cut(s)	114, 291
HpySE526I	ACGT	3 cut(s)	61, 301, 600
Hsp92II	CATG	2 cut(s)	263, 682
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	5 cut(s)	169, 234, 475, 728, 910
LmnI	GCTCC	1 cut(s)	648
Lsp1109I	GCAGC	2 cut(s)	433, 678
LweI	GCATC	3 cut(s)	239, 295, 617
MaeI	CTAG	2 cut(s)	960, 984
MaeII	ACGT	3 cut(s)	61, 301, 600
MalI	GATC	5 cut(s)	171, 236, 477, 730, 912
MboI	GATC	5 cut(s)	169, 234, 475, 728, 910
MboII	GAAGA	1 cut(s)	565
MflI	RGATCY	1 cut(s)	728
MhlI	GDGCHC	2 cut(s)	394, 645
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	8 cut(s)	151, 176, 189, 313, 505, 772, 904, 1033
MluNI	TGGCCA	1 cut(s)	786
Mox20I	TGGCCA	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	2 cut(s)	6, 41
MslI	CAYNNNNRTG	3 cut(s)	345, 714, 792
Msp20I	TGGCCA	1 cut(s)	786
MspI	CCGG	4 cut(s)	649, 723, 951, 988
MspR9I	CCNGG	3 cut(s)	595, 649, 724
MvaI	CCWGG	1 cut(s)	595
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	1 cut(s)	675
NciI	CCSGG	2 cut(s)	649, 724
NdeI	CATATG	2 cut(s)	220, 322
NdeII	GATC	5 cut(s)	169, 234, 475, 728, 910
NlaIII	CATG	2 cut(s)	263, 682
NlaIV	GGNNCC	1 cut(s)	721
NspI	RCATGY	2 cut(s)	263, 682
PciI	ACATGT	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PfeI	GAWTC	5 cut(s)	137, 215, 610, 633, 869
PkrI	GCNGC	3 cut(s)	93, 448, 668
PscI	ACATGT	1 cut(s)	259
PsiI	TTATAA	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	721
PspPI	GGNCC	1 cut(s)	242
PstNI	CAGNNNCTG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	728
RsaI	GTAC	2 cut(s)	122, 465
RsaNI	GTAC	2 cut(s)	121, 464
RseI	CAYNNNNRTG	3 cut(s)	345, 714, 792
SacI	GAGCTC	1 cut(s)	645
SaqAI	TTAA	2 cut(s)	6, 41
SatI	GCNGC	3 cut(s)	92, 447, 667
Sau3AI	GATC	5 cut(s)	169, 234, 475, 728, 910
Sau96I	GGNCC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	595, 649, 724
SduI	GDGCHC	2 cut(s)	394, 645
SfaNI	GCATC	3 cut(s)	239, 295, 617
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	3 cut(s)	345, 714, 792
Sse9I	AATT	8 cut(s)	151, 176, 189, 313, 505, 772, 904, 1033
SsiI	CCGC	4 cut(s)	92, 212, 702, 858
SspMI	CTAG	2 cut(s)	960, 984
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	3 cut(s)	593, 647, 722
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	815, 878, 1043
TaiI	ACGT	3 cut(s)	64, 304, 603
TaqI	TCGA	2 cut(s)	233, 420
TaqII	GACCGA	1 cut(s)	516
TasI	AATT	8 cut(s)	151, 176, 189, 313, 505, 772, 904, 1033
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	5 cut(s)	137, 215, 610, 633, 869
Tru1I	TTAA	2 cut(s)	6, 41
Tru9I	TTAA	2 cut(s)	6, 41
TscAI	CASTG	1 cut(s)	676
TseI	GCWGC	2 cut(s)	446, 666
TspDTI	ATGAA	2 cut(s)	88, 512
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	189, 1033
XceI	RCATGY	2 cut(s)	263, 682
XcmI	CCANNNNNNNNNTGG	1 cut(s)	475
XspI	CTAG	2 cut(s)	960, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.