Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Forward (+)

15240346 .. 15244198

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGATGAGCATCGTGCTCCGGAGGTCACCCACAATAGCCGCGACGCGGGCCGTCGCCGCCATCGAAACCCTACTGATCAACCGCCTCTCATTTCCCGCCACGTCATCCCCCTCACTTCCGGGAAATGGTGATCTCGGCGGCAGTGAGGCTAAGCCAGGGTTTCAAGTTCGGGACTTTCACGTTAAATCTGGGCCGTTGAATTTCCGGGCATCGCCAACGACTTTGTTCGGCGCCCAGGTGGCTTTGGACGACGACTACGACGAGTCGTCTAAATCGAGCGGCGAAGATGGGCTTGAGATTTCGAGGCTAGGGATTGATAAGGAGATTGTGTCTGCTTTGGCCAAGAAGGGGATCACTAAGCTCTTCCCCATTCAGAGAGCTGTGTTGGAACCAGCAATGCAAGGACGTGATATGATTGGTCGTGCTAGAACTGGAACCGGGAAAACTCTTGCATTTGGGATTCCCATTTTGGATAAAATTATTAGATTCAATGCCAAACACGGGCGTGGGAGGAATCCTTTGGCCTTGGTTATGGCTCCGACAAGAGAGCTCGCGAAGCAGGTTGACAAGGAGTTCCACGAGGCAGCACCTAGCTTGGATACTATTTGTGTGTATGGTGGTACGCCCATTGGAAATCAAATCAGGCAGCTTGCCCATGGTACTGATGTGGCTGTGGGCACACCGGGGCGTATTATTGATCTAATCGATAGGGGTGCTTTGAATTTATCCGAAGTTCAGTTCATTGTTCTTGATGAAGCTGATGAGATGCTTAAAGTGGGATTTCAGGAGGCTGTTGAGACAATCTTAAAGAGCTTGCCAAAGAAACGTCAGACCCTGATGTTCTCTGCTACAATGCCGCCTTTCATTAGAAGTCTTACTCAGAAGTACCTAAATAATCCAGCAGTTATTGATCTTGTTGGGGACAATGATCAGAAATTAGCAGACGGAATTTCCCTGTATTCTATTGTTGCGGAATCATATGGAAAAGCATCGATCCTTGGACCACTTATAACAGAACATGCAAAAGGAGGGAAGTGCATTATTTTTACTCAGAGAAAACGTGATGCAGATAATTTGGCATATGCGCTGTCAAGAAGCCATAAATGTGAGGCTTTGCATGGGGATATTTCACAACAGCATAGGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATCTGGTGATACACTACGAGCTTCCAAACAATTCAGAAATATTTGTTCATCGGTCAGGGCGAACAGGTCGTGCTGGGAAGAAAGGAAGTGCTATCCTGATTTACTCACAAAATCAGGCCAGGAACGTCCAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCTCCCCCGGATTGCTGTTGATAGCAGCAGTGCAAGCATGTTCTCTGACAGAGGTAGTAGCGGTGGTCATTTTGGTGGTTCCGGGGGATCTGGATATGGTCGTCCAGCAAGCCGAGGTGGAAACTTTGGTAATTCAGGTTTTGGCCGTTCTGGTGGTTTTGGTGGTTCTGACCGTGCCAGTGGTTTTGGAGTTGGTGGTTCAGACCGTTCAAGCGGTTTTGGTGGTTCAGACCGTTCAAGTGGTTTTGGAGGGTTTGGTAGTTCTGATCATTCAAGTGGCCGTTCAGGTGGTTTTGGAGATCGTTCCGGTGGTTCTAGGGGCTTTGGTGGGAATAATTCTAGCCGGTTTGGAAATTTTGGGAAAGACAGTGGTTTCACAGGGTTTGGAAATTCTGACCGTTCAAGTGGTTCAGGAGGGTTTGGTAGTTCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

612

Amino Acids

64.65

Weight (kDa)

9.4

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	123 - 288	5.5e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	329 - 437	1.7e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1010
Acc36I	ACCTGC	1 cut(s)	550
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	4 cut(s)	41, 46, 554, 1377
AccIII	TCCGGA	1 cut(s)	18
AclWI	GGATC	3 cut(s)	359, 988, 1495
AcoI	YGGCCR	3 cut(s)	339, 1543, 1678
AcsI	RAATTY	5 cut(s)	199, 721, 948, 1753, 1789
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	4 cut(s)	622, 661, 887, 1224
AfiI	CCNNNNNNNGG	4 cut(s)	45, 125, 348, 501
AgsI	TTSAA	9 cut(s)	164, 199, 490, 721, 1373, 1611, 1638, 1674, 1803
AhdI	GACNNNNNGTC	1 cut(s)	265
AjiI	CACGTC	2 cut(s)	102, 407
AjnI	CCWGG	3 cut(s)	154, 234, 1352
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	9 cut(s)	361, 380, 550, 594, 649, 758, 813, 1255, 1402
AluI	AGCT	9 cut(s)	361, 380, 550, 594, 649, 758, 813, 1255, 1402
Alw21I	GWGCWC	3 cut(s)	18, 552, 1404
Alw26I	GTCTC	1 cut(s)	791
AlwI	GGATC	3 cut(s)	359, 988, 1495
AlwNI	CAGNNNCTG	1 cut(s)	835
Aor13HI	TCCGGA	1 cut(s)	18
AoxI	GGCC	7 cut(s)	48, 191, 339, 522, 1350, 1543, 1678
ApeKI	GCWGC	4 cut(s)	584, 646, 1205, 1425
ApoI	RAATTY	5 cut(s)	199, 721, 948, 1753, 1789
AspLEI	GCGC	2 cut(s)	233, 1087
AspS9I	GGNCC	3 cut(s)	48, 191, 1001
AsuC2I	CCSGG	6 cut(s)	120, 206, 439, 684, 1408, 1483
AsuHPI	GGTGA	3 cut(s)	18, 140, 1252
AvaII	GGWCC	1 cut(s)	1001
BaeGI	GKGCMC	2 cut(s)	680, 1153
BaeI	ACNNNNGTAYC	2 cut(s)	651, 684
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	552, 1404
BauI	CACGAG	2 cut(s)	578, 1209
Bbv12I	GWGCWC	3 cut(s)	18, 552, 1404
BbvI	GCAGC	4 cut(s)	596, 658, 1192, 1437
BccI	CCATC	3 cut(s)	68, 281, 1163
BceAI	ACGGC	4 cut(s)	35, 178, 1530, 1665
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	3 cut(s)	156, 236, 1354
BciVI	GTATCC	1 cut(s)	592
BclI	TGATCA	3 cut(s)	75, 928, 1666
BcnI	CCSGG	6 cut(s)	120, 206, 439, 684, 1408, 1483
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	5 cut(s)	308, 426, 591, 1716, 1740
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	592
BglI	GCCNNNNNGGC	1 cut(s)	239
BisI	GCNGC	9 cut(s)	39, 57, 139, 280, 585, 647, 857, 1206, 1426
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	9 cut(s)	40, 58, 140, 281, 586, 648, 858, 1207, 1427
Bme1390I	CCNGG	9 cut(s)	120, 156, 206, 236, 439, 684, 1354, 1408, 1483
Bme18I	GGWCC	1 cut(s)	1001
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmgBI	CACGTC	2 cut(s)	102, 407
BmgT120I	GGNCC	3 cut(s)	48, 191, 1001
BmiI	GGNNCC	5 cut(s)	232, 390, 436, 537, 1480
BmrFI	CCNGG	9 cut(s)	120, 156, 206, 236, 439, 684, 1354, 1408, 1483
BmsI	GCATC	6 cut(s)	18, 218, 756, 998, 1054, 1376
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	6 cut(s)	120, 206, 439, 684, 1408, 1483
Bsa29I	ATCGAT	2 cut(s)	705, 992
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	9 cut(s)	155, 234, 525, 655, 683, 997, 1406, 1482, 1513
BsaWI	WCCGGW	2 cut(s)	18, 1706
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 125, 348, 501
Bse118I	RCCGGY	1 cut(s)	1743
Bse1I	ACTGG	2 cut(s)	436, 1578
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	8
BseAI	TCCGGA	1 cut(s)	18
BseBI	CCWGG	3 cut(s)	156, 236, 1354
BseCI	ATCGAT	2 cut(s)	705, 992
BseDI	CCNNGG	9 cut(s)	155, 234, 525, 655, 683, 997, 1406, 1482, 1513
BseGI	GGATG	2 cut(s)	104, 1391
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	45, 125, 348, 501
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	893, 1064
BseNI	ACTGG	2 cut(s)	436, 1578
BseSI	GKGCMC	2 cut(s)	680, 1153
BseXI	GCAGC	4 cut(s)	596, 658, 1192, 1437
BseYI	CCCAGC	1 cut(s)	1307
Bsh1236I	CGCG	4 cut(s)	41, 46, 554, 1377
BshFI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1680
BshNI	GGYRCC	1 cut(s)	230
BshVI	ATCGAT	2 cut(s)	705, 992
BsiHKAI	GWGCWC	3 cut(s)	18, 552, 1404
BsiSI	CCGG	9 cut(s)	19, 119, 205, 438, 683, 1408, 1482, 1707, 1744
BslFI	GGGAC	2 cut(s)	185, 935
BslI	CCNNNNNNNGG	4 cut(s)	45, 125, 348, 501
BsmAI	GTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	185, 935
BsnI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1680
Bsp1286I	GDGCHC	5 cut(s)	18, 552, 680, 1153, 1404
Bsp13I	TCCGGA	1 cut(s)	18
Bsp1720I	GCTNAGC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	655
Bsp68I	TCGCGA	1 cut(s)	554
BspANI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1680
BspCNI	CTCAG	2 cut(s)	892, 1063
BspDI	ATCGAT	2 cut(s)	705, 992
BspEI	TCCGGA	1 cut(s)	18
BspFNI	CGCG	4 cut(s)	41, 46, 554, 1377
BspLI	GGNNCC	5 cut(s)	232, 390, 436, 537, 1480
BspMI	ACCTGC	1 cut(s)	550
BspPI	GGATC	3 cut(s)	359, 988, 1495
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	230
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	402
BsrFI	RCCGGY	1 cut(s)	1743
BsrI	ACTGG	2 cut(s)	436, 1578
BssAI	RCCGGY	1 cut(s)	1743
BssECI	CCNNGG	9 cut(s)	155, 234, 525, 655, 683, 997, 1406, 1482, 1513
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	2 cut(s)	578, 1209
BssT1I	CCWWGG	3 cut(s)	525, 655, 997
Bst2BI	CACGAG	2 cut(s)	578, 1209
Bst2UI	CCWGG	3 cut(s)	156, 236, 1354
Bst4CI	ACNGT	5 cut(s)	1574, 1607, 1634, 1769, 1799
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	6 cut(s)	48, 552, 651, 815, 1435, 1510
BstDEI	CTNAG	4 cut(s)	150, 357, 879, 1050
BstDSI	CCRYGG	1 cut(s)	655
BstEII	GGTNACC	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	104, 1391
BstFNI	CGCG	4 cut(s)	41, 46, 554, 1377
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	2 cut(s)	233, 1087
BstMAI	GTCTC	1 cut(s)	791
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 56, 239, 556, 1434
BstNI	CCWGG	3 cut(s)	156, 236, 1354
BstNSI	RCATGY	2 cut(s)	1022, 1441
BstPI	GGTNACC	1 cut(s)	24
BstSCI	CCNGG	9 cut(s)	118, 154, 204, 234, 437, 682, 1352, 1406, 1481
BstSLI	GKGCMC	2 cut(s)	680, 1153
BstUI	CGCG	4 cut(s)	41, 46, 554, 1377
BstV1I	GCAGC	4 cut(s)	596, 658, 1192, 1437
BstX2I	RGATCY	1 cut(s)	1487
BstYI	RGATCY	1 cut(s)	1487
Bsu15I	ATCGAT	2 cut(s)	705, 992
BsuI	GTATCC	1 cut(s)	592
BsuRI	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1680
BsuTUI	ATCGAT	2 cut(s)	705, 992
BtgI	CCRYGG	1 cut(s)	655
BtgZI	GCGATG	2 cut(s)	195, 1392
BtrI	CACGTC	2 cut(s)	102, 407
BtsCI	GGATG	2 cut(s)	104, 1391
BtsI	GCAGTG	2 cut(s)	148, 1435
BtsIMutI	CAGTG	4 cut(s)	148, 1435, 1585, 1774
BtuMI	TCGCGA	1 cut(s)	554
BveI	ACCTGC	1 cut(s)	550
Cac8I	GCNNGC	6 cut(s)	48, 552, 651, 815, 1435, 1510
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	2 cut(s)	233, 1087
Cfr10I	RCCGGY	1 cut(s)	1743
Cfr13I	GGNCC	3 cut(s)	48, 191, 1001
ClaI	ATCGAT	2 cut(s)	705, 992
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	621, 660, 886, 1223
CviAII	CATG	4 cut(s)	656, 1019, 1118, 1438
CviQI	GTAC	4 cut(s)	621, 660, 886, 1223
DdeI	CTNAG	4 cut(s)	150, 357, 879, 1050
DinI	GGCGCC	1 cut(s)	232
DriI	GACNNNNNGTC	1 cut(s)	265
EaeI	YGGCCR	3 cut(s)	339, 1543, 1678
Eam1104I	CTCTTC	1 cut(s)	368
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	2 cut(s)	550, 1402
Eco130I	CCWWGG	3 cut(s)	525, 655, 997
Eco24I	GRGCYC	2 cut(s)	552, 1404
Eco47I	GGWCC	1 cut(s)	1001
Eco53kI	GAGCTC	2 cut(s)	550, 1402
Eco91I	GGTNACC	1 cut(s)	24
EcoICRI	GAGCTC	2 cut(s)	550, 1402
EcoO65I	GGTNACC	1 cut(s)	24
EcoRII	CCWGG	3 cut(s)	154, 234, 1352
EcoT14I	CCWWGG	3 cut(s)	525, 655, 997
EcoT38I	GRGCYC	2 cut(s)	552, 1404
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	3 cut(s)	525, 655, 997
FaeI	CATG	4 cut(s)	659, 1022, 1121, 1441
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	185, 935
FatI	CATG	4 cut(s)	655, 1018, 1117, 1437
FauI	CCCGC	2 cut(s)	39, 103
FauNDI	CATATG	2 cut(s)	979, 1081
FbaI	TGATCA	3 cut(s)	75, 928, 1666
Fnu4HI	GCNGC	9 cut(s)	39, 57, 139, 280, 585, 647, 857, 1206, 1426
FokI	GGATG	2 cut(s)	91, 1398
FriOI	GRGCYC	2 cut(s)	552, 1404
Fsp4HI	GCNGC	9 cut(s)	39, 57, 139, 280, 585, 647, 857, 1206, 1426
FspBI	CTAG	5 cut(s)	308, 426, 591, 1716, 1740
GlaI	GCGC	2 cut(s)	232, 1086
GluI	GCNGC	9 cut(s)	39, 57, 139, 280, 585, 647, 857, 1206, 1426
GsaI	CCCAGC	1 cut(s)	1311
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	7 cut(s)	50, 193, 341, 524, 1352, 1545, 1680
HapII	CCGG	9 cut(s)	19, 119, 205, 438, 683, 1408, 1482, 1707, 1744
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	233, 1087
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	659, 1022, 1121, 1441
Hin6I	GCGC	2 cut(s)	231, 1085
HinP1I	GCGC	2 cut(s)	231, 1085
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	7 cut(s)	263, 460, 486, 514, 974, 1369, 1392
HpaII	CCGG	9 cut(s)	19, 119, 205, 438, 683, 1408, 1482, 1707, 1744
HphI	GGTGA	3 cut(s)	18, 140, 1252
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188III	TCNNGA	9 cut(s)	19, 170, 553, 749, 785, 1092, 1330, 1491, 1812
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	4 cut(s)	46, 56, 254, 263
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	5 cut(s)	1574, 1607, 1634, 1769, 1799
HpyCH4IV	ACGT	6 cut(s)	101, 180, 406, 826, 1060, 1359
HpyCH4V	TGCA	9 cut(s)	400, 452, 1022, 1038, 1067, 1117, 1193, 1389, 1433
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 56, 239, 556, 1434
HpyF3I	CTNAG	4 cut(s)	150, 357, 879, 1050
HpySE526I	ACGT	6 cut(s)	101, 180, 406, 826, 1060, 1359
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	659, 1022, 1121, 1441
HspAI	GCGC	2 cut(s)	231, 1085
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	18
Ksp22I	TGATCA	3 cut(s)	75, 928, 1666
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	3 cut(s)	21, 541, 1407
Lsp1109I	GCAGC	4 cut(s)	596, 658, 1192, 1437
LweI	GCATC	6 cut(s)	18, 218, 756, 998, 1054, 1376
MaeI	CTAG	5 cut(s)	308, 426, 591, 1716, 1740
MaeII	ACGT	6 cut(s)	101, 180, 406, 826, 1060, 1359
MaeIII	GTNAC	1 cut(s)	24
MbiI	CCGCTC	1 cut(s)	279
MboII	GAAGA	3 cut(s)	296, 355, 1324
MflI	RGATCY	1 cut(s)	1487
MhlI	GDGCHC	5 cut(s)	18, 552, 680, 1153, 1404
MlsI	TGGCCA	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	366, 563
Mox20I	TGGCCA	1 cut(s)	341
MroI	TCCGGA	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	3 cut(s)	183, 771, 806
MslI	CAYNNNNRTG	4 cut(s)	504, 1104, 1473, 1674
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	9 cut(s)	19, 119, 205, 438, 683, 1408, 1482, 1707, 1744
MspR9I	CCNGG	9 cut(s)	120, 156, 206, 236, 439, 684, 1354, 1408, 1483
MvaI	CCWGG	3 cut(s)	156, 236, 1354
MvnI	CGCG	4 cut(s)	41, 46, 554, 1377
MwoI	GCNNNNNNNGC	5 cut(s)	47, 56, 239, 556, 1434
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	6 cut(s)	120, 206, 439, 684, 1408, 1483
NcoI	CCATGG	1 cut(s)	655
NdeI	CATATG	2 cut(s)	979, 1081
NlaIII	CATG	4 cut(s)	659, 1022, 1121, 1441
NlaIV	GGNNCC	5 cut(s)	232, 390, 436, 537, 1480
NmeAIII	GCCGAG	2 cut(s)	114, 1538
NmuCI	GTSAC	1 cut(s)	24
NruI	TCGCGA	1 cut(s)	554
NspI	RCATGY	2 cut(s)	1022, 1441
OliI	CACNNNNGTG	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	5 cut(s)	60, 255, 258, 272, 1291
PfeI	GAWTC	6 cut(s)	460, 486, 514, 974, 1369, 1392
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	9 cut(s)	40, 58, 140, 281, 586, 648, 858, 1207, 1427
PleI	GAGTC	1 cut(s)	271
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	271
PsiI	TTATAA	1 cut(s)	1010
Psp124BI	GAGCTC	2 cut(s)	552, 1404
Psp6I	CCWGG	3 cut(s)	154, 234, 1352
PspEI	GGTNACC	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	1307
PspGI	CCWGG	3 cut(s)	154, 234, 1352
PspN4I	GGNNCC	5 cut(s)	232, 390, 436, 537, 1480
PspPI	GGNCC	3 cut(s)	48, 191, 1001
PstNI	CAGNNNCTG	1 cut(s)	835
PsuI	RGATCY	1 cut(s)	1487
RruI	TCGCGA	1 cut(s)	554
RsaI	GTAC	4 cut(s)	622, 661, 887, 1224
RsaNI	GTAC	4 cut(s)	621, 660, 886, 1223
RseI	CAYNNNNRTG	4 cut(s)	504, 1104, 1473, 1674
SacI	GAGCTC	2 cut(s)	552, 1404
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	183, 771, 806
SatI	GCNGC	9 cut(s)	39, 57, 139, 280, 585, 647, 857, 1206, 1426
Sau96I	GGNCC	3 cut(s)	48, 191, 1001
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	9 cut(s)	120, 156, 206, 236, 439, 684, 1354, 1408, 1483
SduI	GDGCHC	5 cut(s)	18, 552, 680, 1153, 1404
SfaNI	GCATC	6 cut(s)	18, 218, 756, 998, 1054, 1376
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	1001
SmiMI	CAYNNNNRTG	4 cut(s)	504, 1104, 1473, 1674
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SspDI	GGCGCC	1 cut(s)	230
SspI	AATATT	1 cut(s)	1275
SspMI	CTAG	5 cut(s)	308, 426, 591, 1716, 1740
SstI	GAGCTC	2 cut(s)	552, 1404
StyD4I	CCNGG	9 cut(s)	118, 154, 204, 234, 437, 682, 1352, 1406, 1481
StyI	CCWWGG	3 cut(s)	525, 655, 997
TaaI	ACNGT	5 cut(s)	1574, 1607, 1634, 1769, 1799
TaiI	ACGT	6 cut(s)	104, 183, 409, 829, 1063, 1362
TaqI	TCGA	6 cut(s)	63, 275, 302, 705, 992, 1179
TaqII	GACCGA	1 cut(s)	1275
TauI	GCSGC	5 cut(s)	41, 59, 141, 282, 859
TfiI	GAWTC	6 cut(s)	460, 486, 514, 974, 1369, 1392
Tru1I	TTAA	3 cut(s)	183, 771, 806
Tru9I	TTAA	3 cut(s)	183, 771, 806
TscAI	CASTG	4 cut(s)	148, 1435, 1585, 1774
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	4 cut(s)	584, 646, 1205, 1425
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	4 cut(s)	730, 768, 853, 1271
TspGWI	ACGGA	1 cut(s)	960
TspRI	CASTG	4 cut(s)	148, 1435, 1585, 1774
VpaK11BI	GGWCC	1 cut(s)	1001
XapI	RAATTY	5 cut(s)	199, 721, 948, 1753, 1789
XceI	RCATGY	2 cut(s)	1022, 1441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1234
XspI	CTAG	5 cut(s)	308, 426, 591, 1716, 1740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.