Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004976.1

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

10109 .. 11532

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004976.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

atggcctcgagattgatcaggagattgtatcttctttggccaagaaggagatcactaagctttttcccattcagagagctgtcttggaaccagcaatgcaagggcgtgtgggaggaatactttgggcttggttatggctccgacaagagagctcgcgaggcagggcgtattattgatctaatcgataggggtgctttgaatttatccaaagttcagttcattgttcttgatgaagccgatgagatgcttaaagtgggatttcaggaggctgttgagacaatcttaaagagcttgccgaagaaacgtcagaccctgatgttctctgcaacaatgccgcctttcattagaagtcttactcagaagtacctaaataatccagcacttatttatcttaaattagcagatggaatttccctgtattctattgctgcggaatcatatggaaaatcatcaatccttggaccacttataacagaacatgcgaaaggagggaagtgcattgtttttactcacagaaaacgtgatgcacataatttggcatatgccctgtcaagaagccataaatgtgaggctttgcacggggatatttcacaacagcatagggaaagggcactttcaggtttccgagatgggcatttcgatgttttagttgcaacagatgttgctgctcgtgggcttgatgtacccaatgttgatctggtgagctttctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

237

Amino Acids

26.87

Weight (kDa)

9.53

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AccII	CGCG	1 cut(s)	156
AciI	CCGC	2 cut(s)	335, 431
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	199, 408
AfaI	GTAC	2 cut(s)	365, 684
AgsI	TTSAA	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	5 cut(s)	60, 79, 152, 291, 705
AluI	AGCT	5 cut(s)	60, 79, 152, 291, 705
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	2 cut(s)	3, 38
ApeKI	GCWGC	2 cut(s)	428, 665
ApoI	RAATTY	2 cut(s)	199, 408
AspS9I	GGNCC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	712
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	613
BalI	TGGCCA	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	669
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	2 cut(s)	415, 652
BccI	CCATC	2 cut(s)	398, 623
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BclI	TGATCA	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	335, 429, 666
BlsI	GCNGC	3 cut(s)	336, 430, 667
Bme18I	GGWCC	1 cut(s)	461
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	2 cut(s)	89, 139
BmsI	GCATC	2 cut(s)	234, 514
Bsa29I	ATCGAT	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	457
Bse3DI	GCAATG	1 cut(s)	101
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	2 cut(s)	415, 652
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	5, 40
BshVI	ATCGAT	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	7
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	5, 40
BsoBI	CYCGRG	1 cut(s)	7
Bsp1286I	GDGCHC	2 cut(s)	154, 613
Bsp143I	GATC	4 cut(s)	15, 50, 175, 694
Bsp68I	TCGCGA	1 cut(s)	156
BspACI	CCGC	2 cut(s)	335, 431
BspANI	GGCC	2 cut(s)	5, 40
BspCNI	CTCAG	1 cut(s)	370
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	89, 139
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	4 cut(s)	15, 50, 175, 694
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	457
Bst2BI	CACGAG	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	154, 293
BstDEI	CTNAG	2 cut(s)	56, 357
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	4 cut(s)	18, 53, 178, 697
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	4 cut(s)	15, 50, 175, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	482
BstSLI	GKGCMC	1 cut(s)	613
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	2 cut(s)	415, 652
Bsu15I	ATCGAT	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	5, 40
BsuTUI	ATCGAT	1 cut(s)	183
BtuMI	TCGCGA	1 cut(s)	156
Cac8I	GCNNGC	2 cut(s)	154, 293
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	461
ClaI	ATCGAT	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	364, 683
CviAII	CATG	1 cut(s)	479
CviQI	GTAC	2 cut(s)	364, 683
DdeI	CTNAG	2 cut(s)	56, 357
DpnI	GATC	4 cut(s)	17, 52, 177, 696
DpnII	GATC	4 cut(s)	15, 50, 175, 694
EaeI	YGGCCR	1 cut(s)	38
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	457
FaeI	CATG	1 cut(s)	482
FatI	CATG	1 cut(s)	478
FauNDI	CATATG	2 cut(s)	439, 541
FbaI	TGATCA	1 cut(s)	15
Fnu4HI	GCNGC	3 cut(s)	335, 429, 666
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	3 cut(s)	335, 429, 666
GluI	GCNGC	3 cut(s)	335, 429, 666
HaeIII	GGCC	2 cut(s)	5, 40
Hin1II	CATG	1 cut(s)	482
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	1 cut(s)	434
HphI	GGTGA	1 cut(s)	712
Hpy188I	TCNGA	5 cut(s)	74, 142, 309, 360, 626
Hpy188III	TCNNGA	6 cut(s)	9, 19, 155, 227, 263, 552
HpyAV	CCTTC	1 cut(s)	39
HpyCH4IV	ACGT	2 cut(s)	304, 520
HpyCH4V	TGCA	6 cut(s)	99, 326, 498, 527, 577, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	56, 357
HpySE526I	ACGT	2 cut(s)	304, 520
Hsp92II	CATG	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	15
Kzo9I	GATC	4 cut(s)	15, 50, 175, 694
LmnI	GCTCC	1 cut(s)	143
Lsp1109I	GCAGC	2 cut(s)	415, 652
LweI	GCATC	2 cut(s)	234, 514
MaeII	ACGT	2 cut(s)	304, 520
MalI	GATC	4 cut(s)	17, 52, 177, 696
MboI	GATC	4 cut(s)	15, 50, 175, 694
MboII	GAAGA	2 cut(s)	23, 310
MhlI	GDGCHC	2 cut(s)	154, 613
MlsI	TGGCCA	1 cut(s)	40
MluCI	AATT	4 cut(s)	199, 395, 408, 532
MluNI	TGGCCA	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	16, 106, 151, 259, 482, 562
Mox20I	TGGCCA	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	40
MseI	TTAA	3 cut(s)	249, 284, 393
MslI	CAYNNNNRTG	2 cut(s)	564, 639
Msp20I	TGGCCA	1 cut(s)	40
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeI	CATATG	2 cut(s)	439, 541
NdeII	GATC	4 cut(s)	15, 50, 175, 694
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	2 cut(s)	89, 139
NruI	TCGCGA	1 cut(s)	156
NspI	RCATGY	1 cut(s)	482
PaeR7I	CTCGAG	1 cut(s)	7
PfeI	GAWTC	1 cut(s)	434
PkrI	GCNGC	3 cut(s)	336, 430, 667
PsiI	TTATAA	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	89, 139
PspPI	GGNCC	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	313
RruI	TCGCGA	1 cut(s)	156
RsaI	GTAC	2 cut(s)	365, 684
RsaNI	GTAC	2 cut(s)	364, 683
RseI	CAYNNNNRTG	2 cut(s)	564, 639
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	249, 284, 393
SatI	GCNGC	3 cut(s)	335, 429, 666
Sau3AI	GATC	4 cut(s)	15, 50, 175, 694
Sau96I	GGNCC	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	154, 613
SetI	ASST	9 cut(s)	62, 81, 154, 293, 307, 369, 523, 622, 707
SfaNI	GCATC	2 cut(s)	234, 514
Sfr274I	CTCGAG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	564, 639
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	4 cut(s)	199, 395, 408, 532
SsiI	CCGC	2 cut(s)	335, 431
SstI	GAGCTC	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	457
TaiI	ACGT	2 cut(s)	307, 523
TaqI	TCGA	3 cut(s)	8, 183, 639
TasI	AATT	4 cut(s)	199, 395, 408, 532
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	434
Tru1I	TTAA	3 cut(s)	249, 284, 393
Tru9I	TTAA	3 cut(s)	249, 284, 393
TseI	GCWGC	2 cut(s)	428, 665
TspDTI	ATGAA	3 cut(s)	208, 246, 331
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	2 cut(s)	199, 408
XceI	RCATGY	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.