Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

66661884 .. 66662813

Gene Structure 930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG496100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTATCTGCAACAATGCCTACGGGGATCAAAAATCTTACTAGGAATTACCTAAAGGATCCAGCAGTTATCGATCTTGTTGGGGAGTCTGATCAGAAATTGGCAGATGGAATTTCCCTATACTCGATTGCTGCAGATTCATATGGAAAAGCGTCAATTATTGGACCACTGATAACAGAACACGCAAATGGAGGAAAGTGCATTGTTTTTATTCAGACAAAACCTGATGCTGATCAATTGGCATTTGCCATGGCAAGAAAGCATAACTGTGAGGCTTTGCATGGGGATATTTCACAACAACAGAGAGAAAGGACACTTGCAGGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

109

Amino Acids

11.75

Weight (kDa)

6.25

Isoelectric Point (pI)

15.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	51 - 109	1.4e-07	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AclWI	GGATC	3 cut(s)	35, 53, 66
AcsI	RAATTY	1 cut(s)	111
AlwI	GGATC	3 cut(s)	35, 53, 66
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	58
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	101
BclI	TGATCA	2 cut(s)	91, 232
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	60
BmsI	GCATC	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	118
BshVI	ATCGAT	1 cut(s)	72
Bsp143I	GATC	5 cut(s)	27, 58, 73, 91, 232
Bsp19I	CCATGG	1 cut(s)	249
BspDI	ATCGAT	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	35, 53, 66
BssECI	CCNNGG	1 cut(s)	249
BssMI	GATC	5 cut(s)	27, 58, 73, 91, 232
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	269
BstDSI	CCRYGG	1 cut(s)	249
BstKTI	GATC	5 cut(s)	30, 61, 76, 94, 235
BstMBI	GATC	5 cut(s)	27, 58, 73, 91, 232
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
Bsu15I	ATCGAT	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	72
BtgI	CCRYGG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	167
BveI	ACCTGC	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	72
CseI	GACGC	1 cut(s)	141
CviAII	CATG	2 cut(s)	250, 281
CviJI	RGCY	1 cut(s)	275
CviKI_1	RGCY	1 cut(s)	275
DpnI	GATC	5 cut(s)	29, 60, 75, 93, 234
DpnII	GATC	5 cut(s)	27, 58, 73, 91, 232
Eco130I	CCWWGG	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	2 cut(s)	253, 284
FaiI	YATR	6 cut(s)	121, 142, 144, 251, 264, 282
FatI	CATG	2 cut(s)	249, 280
FauNDI	CATATG	1 cut(s)	142
FbaI	TGATCA	2 cut(s)	91, 232
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	132
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	2 cut(s)	253, 284
HinfI	GANTC	2 cut(s)	86, 137
Hpy188I	TCNGA	3 cut(s)	91, 96, 216
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4V	TGCA	5 cut(s)	11, 134, 201, 280, 320
Hsp92II	CATG	2 cut(s)	253, 284
Ksp22I	TGATCA	2 cut(s)	91, 232
Kzo9I	GATC	5 cut(s)	27, 58, 73, 91, 232
LpnPI	CCDG	3 cut(s)	75, 237, 306
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	42
MalI	GATC	5 cut(s)	29, 60, 75, 93, 234
MboI	GATC	5 cut(s)	27, 58, 73, 91, 232
MfeI	CAATTG	1 cut(s)	236
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	5 cut(s)	46, 98, 111, 156, 236
MlyI	GAGTC	1 cut(s)	95
MnlI	CCTC	2 cut(s)	185, 265
MslI	CAYNNNNRTG	2 cut(s)	186, 267
MunI	CAATTG	1 cut(s)	236
NcoI	CCATGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	5 cut(s)	27, 58, 73, 91, 232
NlaIII	CATG	2 cut(s)	253, 284
NlaIV	GGNNCC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	186, 267
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	5 cut(s)	27, 58, 73, 91, 232
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	95
SetI	ASST	3 cut(s)	54, 226, 325
SfaNI	GCATC	1 cut(s)	217
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	186, 267
Sse9I	AATT	5 cut(s)	46, 98, 111, 156, 236
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	72, 125
TasI	AATT	5 cut(s)	46, 98, 111, 156, 236
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	111
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.