Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Forward (+)

57210449 .. 57211746

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0445500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCTCCATTGATGTCGTTACAGCGAGTTTCGCTGCCTCTCTTGCTCTTGCTGAAGGGGGTAGAGCCCCTGATCTGGGGAAGATTGGAGGAGAATATGATGGTGTCAAGTCACTGCATGAGATTCAGTTCAAGCATCTCCGGATTTGGACTAAGGTTTCGGGCATTCCACCTCTGTATGAAGAACCCGAGAATCTCACTCTGATTGGTACCTCTTGGGTGTTCGAGCATCTGAAAGGGAGATGTTCTCAATGTGGACTCATCACTCATGTTGGCCTTGCTTGTGAGGAGTCAACTGTAGCAATCCCTACTTCTAGGGTTTTGCACTTTCCTGGACCTTCGGCCTATGGGGGTTCATTTGCTTTCTCTGCTAAGAACAAACAGGATCTCTTCACTGCCTCTTCGTCCATCCCAAAGAAGAAGAAGTCATTCTTCCGTCGAGTGGCGCGCCGGAGTTCTAGCCCTCCTTCTCCTACTGATCCAGTTTTTGTAGTAGTTAGTAATGAGACTGTTGATCCTACTTTGGAGCACAGGTTGGAGACTAATGGGGCTCTAAGTGAGGAGCCTGTTATTGAGGCGGAAGCACTCGGACTCACTGAGGAGGATAGTGACGTTACTTTGGTAACTCTGAAAAAGAAGACCGGTAAGCCTCTTGGAAGCAAGAATAAAATTCAGCGTGCCAACAAGAAGCCTAATGGTACCCCTTTGAGGATCACTTATCCTACTATCACTGGTTCAGTTCCCAGCCCTAGAGACAAGGGCAAAGGAAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

258

Amino Acids

27.8

Weight (kDa)

9.27

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	209, 698
AccB1I	GGYRCC	2 cut(s)	209, 698
AccII	CGCG	1 cut(s)	448
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	4 cut(s)	393, 473, 509, 719
AcsI	RAATTY	1 cut(s)	669
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	211, 700
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 442, 708
AgeI	ACCGGT	1 cut(s)	641
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	331
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	3 cut(s)	500, 533, 747
AlwI	GGATC	4 cut(s)	393, 473, 509, 719
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	3 cut(s)	3, 274, 342
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	669
ArsI	GACNNNNNNTTYG	2 cut(s)	142, 174
AscI	GGCGCGCC	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	428
Asp718I	GGTACC	2 cut(s)	209, 698
AspLEI	GCGC	2 cut(s)	448, 450
AspS9I	GGNCC	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	335
BanI	GGYRCC	2 cut(s)	209, 698
BanII	GRGCYC	2 cut(s)	70, 553
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	95, 416
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	3 cut(s)	500, 533, 747
BfaI	CTAG	3 cut(s)	315, 459, 750
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	3 cut(s)	211, 564, 700
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	145, 238
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BsaWI	WCCGGW	2 cut(s)	141, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 442, 708
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	482, 736
BseAI	TCCGGA	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 442, 708
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	2 cut(s)	482, 736
BsePI	GCGCGC	1 cut(s)	446
BseRI	GAGGAG	4 cut(s)	105, 302, 575, 614
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	743
Bsh1236I	CGCG	1 cut(s)	448
BshFI	GGCC	3 cut(s)	5, 276, 344
BshNI	GGYRCC	2 cut(s)	209, 698
BshTI	ACCGGT	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	3 cut(s)	142, 451, 642
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 442, 708
BsmAI	GTCTC	3 cut(s)	500, 533, 747
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	5, 276, 344
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	70, 531, 553
Bsp13I	TCCGGA	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	73, 385, 478, 514, 711
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	3 cut(s)	5, 276, 344
BspCNI	CTCAG	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	211, 564, 700
BspPI	GGATC	4 cut(s)	393, 473, 509, 719
BspT107I	GGYRCC	2 cut(s)	209, 698
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	482, 736
BssAI	RCCGGY	1 cut(s)	641
BssHII	GCGCGC	1 cut(s)	446
BssMI	GATC	5 cut(s)	73, 385, 478, 514, 711
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	2 cut(s)	298, 511
Bst6I	CTCTTC	2 cut(s)	395, 406
BstC8I	GCNNGC	2 cut(s)	448, 678
BstDEI	CTNAG	4 cut(s)	153, 372, 554, 597
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	448
BstHHI	GCGC	2 cut(s)	448, 450
BstKTI	GATC	5 cut(s)	76, 388, 481, 517, 714
BstMAI	GTCTC	3 cut(s)	500, 533, 747
BstMBI	GATC	5 cut(s)	73, 385, 478, 514, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 44, 368
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	3 cut(s)	5, 276, 344
BtsCI	GGATG	1 cut(s)	408
BtsI	GCAGTG	2 cut(s)	113, 393
BtsIMutI	CAGTG	4 cut(s)	113, 393, 594, 729
Cac8I	GCNNGC	2 cut(s)	448, 678
CfoI	GCGC	2 cut(s)	448, 450
Cfr10I	RCCGGY	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	210, 699
CspAI	ACCGGT	1 cut(s)	641
CviAII	CATG	2 cut(s)	119, 269
CviQI	GTAC	2 cut(s)	210, 699
DdeI	CTNAG	4 cut(s)	153, 372, 554, 597
DpnI	GATC	5 cut(s)	75, 387, 480, 516, 713
DpnII	GATC	5 cut(s)	73, 385, 478, 514, 711
Eam1104I	CTCTTC	2 cut(s)	395, 406
EarI	CTCTTC	2 cut(s)	395, 406
EciI	GGCGGA	1 cut(s)	593
Eco24I	GRGCYC	2 cut(s)	70, 553
Eco47I	GGWCC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	2 cut(s)	70, 553
FaeI	CATG	2 cut(s)	122, 272
FaiI	YATR	5 cut(s)	99, 120, 180, 270, 348
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	2 cut(s)	118, 268
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	2 cut(s)	70, 553
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	3 cut(s)	315, 459, 750
GlaI	GCGC	2 cut(s)	447, 449
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	5, 276, 344
HapII	CCGG	3 cut(s)	142, 451, 642
HhaI	GCGC	2 cut(s)	448, 450
Hin1II	CATG	2 cut(s)	122, 272
Hin6I	GCGC	2 cut(s)	446, 448
HinP1I	GCGC	2 cut(s)	446, 448
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	5 cut(s)	124, 193, 258, 290, 591
HpaII	CCGG	3 cut(s)	142, 451, 642
Hpy166II	GTNNAC	2 cut(s)	257, 294
Hpy188I	TCNGA	4 cut(s)	204, 234, 590, 630
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	2 cut(s)	257, 294
Hpy99I	CGWCG	1 cut(s)	441
HpyAV	CCTTC	3 cut(s)	50, 348, 477
HpyCH4III	ACNGT	2 cut(s)	298, 511
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	2 cut(s)	118, 325
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 44, 368
HpyF3I	CTNAG	4 cut(s)	153, 372, 554, 597
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	2 cut(s)	122, 272
HspAI	GCGC	2 cut(s)	446, 448
Kpn2I	TCCGGA	1 cut(s)	141
KpnI	GGTACC	2 cut(s)	213, 702
Kzo9I	GATC	5 cut(s)	73, 385, 478, 514, 711
LmnI	GCTCC	2 cut(s)	526, 562
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	2 cut(s)	145, 238
MaeI	CTAG	3 cut(s)	315, 459, 750
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	5 cut(s)	19, 111, 608, 613, 622
MalI	GATC	5 cut(s)	75, 387, 480, 516, 713
MboI	GATC	5 cut(s)	73, 385, 478, 514, 711
MboII	GAAGA	8 cut(s)	94, 194, 382, 393, 424, 430, 433, 649
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	3 cut(s)	70, 531, 553
MluCI	AATT	1 cut(s)	669
MlyI	GAGTC	3 cut(s)	252, 299, 585
MmeI	TCCRAC	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	141
MroXI	GAANNNNTTC	1 cut(s)	428
MspI	CCGG	3 cut(s)	142, 451, 642
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	448
MwoI	GCNNNNNNNGC	3 cut(s)	32, 44, 368
NdeII	GATC	5 cut(s)	73, 385, 478, 514, 711
NlaIII	CATG	2 cut(s)	122, 272
NlaIV	GGNNCC	3 cut(s)	211, 564, 700
NmuCI	GTSAC	2 cut(s)	111, 608
PalAI	GGCGCGCC	1 cut(s)	446
PauI	GCGCGC	1 cut(s)	446
PctI	GAATGC	1 cut(s)	165
PdmI	GAANNNNTTC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	124, 193
PfoI	TCCNGGA	1 cut(s)	331
PinAI	ACCGGT	1 cut(s)	641
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	3 cut(s)	252, 298, 585
PpsI	GAGTC	3 cut(s)	252, 298, 585
Psp6I	CCWGG	1 cut(s)	331
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	211, 564, 700
PspPI	GGNCC	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	385
PteI	GCGCGC	1 cut(s)	446
RsaI	GTAC	2 cut(s)	211, 700
RsaNI	GTAC	2 cut(s)	210, 699
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	5 cut(s)	73, 385, 478, 514, 711
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	3 cut(s)	252, 299, 585
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	3 cut(s)	70, 531, 553
SetI	ASST	6 cut(s)	159, 175, 215, 340, 536, 615
SfaNI	GCATC	2 cut(s)	145, 238
SfcI	CTRYAG	1 cut(s)	297
SgsI	GGCGCGCC	1 cut(s)	446
SinI	GGWCC	1 cut(s)	335
Sse9I	AATT	1 cut(s)	669
SsiI	CCGC	1 cut(s)	578
SspMI	CTAG	3 cut(s)	315, 459, 750
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	2 cut(s)	298, 511
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	2 cut(s)	225, 439
TasI	AATT	1 cut(s)	669
TfiI	GAWTC	2 cut(s)	124, 193
TscAI	CASTG	4 cut(s)	120, 400, 601, 736
TseFI	GTSAC	2 cut(s)	111, 608
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	111, 608
TspDTI	ATGAA	2 cut(s)	195, 345
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	4 cut(s)	120, 400, 601, 736
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	669
XmnI	GAANNNNTTC	1 cut(s)	428
XspI	CTAG	3 cut(s)	315, 459, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.