Rmu_sc0002048.1_g000019

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002048.1
Physical Location & Seq
Reverse (-)
72825 .. 76226
3402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002048.1_g000019.1.cds

Sequence Viewer

Length: 1350 bp
atgctggctgtatgggcggggctgcgtcggattaaggctggaagtttgggtgcggaggatccggctgcttttttcttctcccgttgcaacgtaattgattgtggtggtgtgcagcttgattgggtgcccagaatgttgggggcccagagcaatttatgctgggcctgggcctcttttgcttgggcttgggcattgcttctggtcggcctcttgttggctaaggcgacgtcggtggcgagcaatgccaaatatgggcgtgggagcaatcttttgggcttggttatggctccgacaagagagctcgcgaagcaggttgacaaggagttccacgaggcagcacctggcttggatactatttgtgtgtatggtggtacgcccattggaaaccaaatcaggcagcttggctatggaactgaggtggctgtgggcacaccagggcgtattattgatctaatcgataggggtgctttgaatttatccgaagttcagttcattgttcttgatgaagccgatgagatgcttaaagtgggatttcaggaggctgttgagacaatcttaaagagcttgccaaagaaacataatttggcatatgccctgtcaagaagccataaatgtgaggctttgcacggggatatttcacaacagcagagggaaagggcactttcaggtttccgagatgggcgtttcgatgttttagttgcaacagatgttgctgctcgtgggcttgatgtacccaatgttgatctggtgatacactatgagcttccaaacaattcagagatatttgttcatcggtcagggcgaacaggtcgtgctgggaagaaaggaagtgctatcctgatttactcacaaaatcaggccaggaacgtccaaatgattcaacgcgatgtaggatgcagattcacagagctcccccggattgctgttgatagcagcagtgtgagcatgttctctgacagaggtagtagtggtggtcattttggtggttccgggggatctggatatggtcgtccagcaaaccgaggtggaaactttgataattcaggttttggccattctggtggttttggtggttctgaccgttccaatggttttggagggtttggtggttcagaccattcaagcggttttggtggttcagaccgttcaagtggttttggagggtttgggaattctgatcgttcaagtggccgttcaggtgggtttggaggtcgttccggtggttctaggggctttggtgggaatagttctagccggtttggaaaatttgggaaagacaatggtttcacggggtttggaaattctgactgttcaagtggttcgggagggtttggtagttctgatttttga

Protein Analysis

449

Amino Acids

47.12

Weight (kDa)

8.81

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 301
AccB1I GGYRCC 1 cut(s) 124
AccII CGCG 2 cut(s) 305, 885
AciI CCGC 3 cut(s) 17, 53, 1125
AclWI GGATC 3 cut(s) 53, 66, 1003
AcoI YGGCCR 2 cut(s) 1051, 1189
AcsI RAATTY 4 cut(s) 472, 1171, 1265, 1300
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 2 cut(s) 373, 732
AfiI CCNNNNNNNGG 2 cut(s) 214, 252
AgsI TTSAA 6 cut(s) 472, 881, 1122, 1149, 1185, 1314
AjnI CCWGG 4 cut(s) 164, 340, 433, 860
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 6 cut(s) 115, 301, 400, 564, 763, 910
AluI AGCT 6 cut(s) 115, 301, 400, 564, 763, 910
Alw21I GWGCWC 2 cut(s) 303, 912
Alw26I GTCTC 1 cut(s) 542
AlwI GGATC 3 cut(s) 53, 66, 1003
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 7 cut(s) 141, 162, 168, 205, 858, 1051, 1189
ApaI GGGCCC 1 cut(s) 145
ApeKI GCWGC 7 cut(s) 22, 65, 112, 335, 397, 713, 933
ApoI RAATTY 4 cut(s) 472, 1171, 1265, 1300
AspS9I GGNCC 4 cut(s) 141, 142, 162, 168
AsuC2I CCSGG 2 cut(s) 916, 991
AsuHPI GGTGA 1 cut(s) 760
BaeGI GKGCMC 4 cut(s) 129, 145, 431, 661
BalI TGGCCA 1 cut(s) 1053
BamHI GGATCC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 124
BanII GRGCYC 3 cut(s) 145, 303, 912
BauI CACGAG 2 cut(s) 329, 717
Bbv12I GWGCWC 2 cut(s) 303, 912
BbvI GCAGC 7 cut(s) 9, 52, 124, 347, 409, 700, 945
BccI CCATC 1 cut(s) 671
BceAI ACGGC 1 cut(s) 1176
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 4 cut(s) 166, 342, 435, 862
BciVI GTATCC 1 cut(s) 343
BcnI CCSGG 2 cut(s) 916, 991
BcoDI GTCTC 1 cut(s) 542
BfaI CTAG 2 cut(s) 1227, 1251
BfuAI ACCTGC 1 cut(s) 301
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 7 cut(s) 23, 66, 113, 336, 398, 714, 934
BlsI GCNGC 7 cut(s) 24, 67, 114, 337, 399, 715, 935
Bme1390I CCNGG 6 cut(s) 166, 342, 435, 862, 916, 991
BmgT120I GGNCC 4 cut(s) 141, 142, 162, 168
BmiI GGNNCC 6 cut(s) 60, 126, 142, 143, 288, 988
BmrFI CCNGG 6 cut(s) 166, 342, 435, 862, 916, 991
BmsI GCATC 2 cut(s) 507, 884
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 916, 991
Bsa29I ATCGAT 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 5 cut(s) 165, 434, 914, 990, 1021
BsaWI WCCGGW 1 cut(s) 1217
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 252
Bse118I RCCGGY 1 cut(s) 1254
Bse3DI GCAATG 2 cut(s) 191, 247
BseBI CCWGG 4 cut(s) 166, 342, 435, 862
BseCI ATCGAT 1 cut(s) 456
BseDI CCNNGG 5 cut(s) 165, 434, 914, 990, 1021
BseGI GGATG 1 cut(s) 899
BseLI CCNNNNNNNGG 2 cut(s) 214, 252
BseMI GCAATG 2 cut(s) 191, 247
BseMII CTCAG 1 cut(s) 405
BseSI GKGCMC 4 cut(s) 129, 145, 431, 661
BseXI GCAGC 7 cut(s) 9, 52, 124, 347, 409, 700, 945
BseYI CCCAGC 2 cut(s) 159, 815
BsgI GTGCAG 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 305, 885
BshFI GGCC 7 cut(s) 143, 164, 170, 207, 860, 1053, 1191
BshNI GGYRCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 456
BsiHKAI GWGCWC 2 cut(s) 303, 912
BsiSI CCGG 5 cut(s) 62, 916, 990, 1218, 1255
BslI CCNNNNNNNGG 2 cut(s) 214, 252
BsmAI GTCTC 1 cut(s) 542
BsnI GGCC 7 cut(s) 143, 164, 170, 207, 860, 1053, 1191
Bsp120I GGGCCC 1 cut(s) 141
Bsp1286I GDGCHC 6 cut(s) 129, 145, 303, 431, 661, 912
Bsp143I GATC 5 cut(s) 58, 448, 742, 995, 1177
Bsp68I TCGCGA 1 cut(s) 305
BspACI CCGC 3 cut(s) 17, 53, 1125
BspANI GGCC 7 cut(s) 143, 164, 170, 207, 860, 1053, 1191
BspCNI CTCAG 1 cut(s) 406
BspDI ATCGAT 1 cut(s) 456
BspFNI CGCG 2 cut(s) 305, 885
BspLI GGNNCC 6 cut(s) 60, 126, 142, 143, 288, 988
BspMI ACCTGC 1 cut(s) 301
BspPI GGATC 3 cut(s) 53, 66, 1003
BspT107I GGYRCC 1 cut(s) 124
BsrDI GCAATG 2 cut(s) 191, 247
BsrFI RCCGGY 1 cut(s) 1254
BssAI RCCGGY 1 cut(s) 1254
BssECI CCNNGG 5 cut(s) 165, 434, 914, 990, 1021
BssMI GATC 5 cut(s) 58, 448, 742, 995, 1177
BssNI GRCGYC 1 cut(s) 227
BssSI CACGAG 2 cut(s) 329, 717
Bst2BI CACGAG 2 cut(s) 329, 717
Bst2UI CCWGG 4 cut(s) 166, 342, 435, 862
Bst4CI ACNGT 3 cut(s) 1082, 1145, 1310
BstACI GRCGYC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 6, 238, 303, 566
BstDEI CTNAG 2 cut(s) 219, 414
BstF5I GGATG 1 cut(s) 899
BstFNI CGCG 2 cut(s) 305, 885
BstKTI GATC 5 cut(s) 61, 451, 745, 998, 1180
BstMAI GTCTC 1 cut(s) 542
BstMBI GATC 5 cut(s) 58, 448, 742, 995, 1177
BstMWI GCNNNNNNNGC 6 cut(s) 14, 156, 176, 242, 307, 942
BstNI CCWGG 4 cut(s) 166, 342, 435, 862
BstNSI RCATGY 1 cut(s) 949
BstSCI CCNGG 6 cut(s) 164, 340, 433, 860, 914, 989
BstSLI GKGCMC 4 cut(s) 129, 145, 431, 661
BstUI CGCG 2 cut(s) 305, 885
BstV1I GCAGC 7 cut(s) 9, 52, 124, 347, 409, 700, 945
BstX2I RGATCY 2 cut(s) 58, 995
BstXI CCANNNNNNTGG 2 cut(s) 136, 1061
BstYI RGATCY 2 cut(s) 58, 995
Bsu15I ATCGAT 1 cut(s) 456
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 7 cut(s) 143, 164, 170, 207, 860, 1053, 1191
BsuTUI ATCGAT 1 cut(s) 456
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 1 cut(s) 899
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 1 cut(s) 943
BtuMI TCGCGA 1 cut(s) 305
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 4 cut(s) 6, 238, 303, 566
CaiI CAGNNNCTG 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 1254
Cfr13I GGNCC 4 cut(s) 141, 142, 162, 168
ClaI ATCGAT 1 cut(s) 456
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 372, 731
CviAII CATG 1 cut(s) 946
CviQI GTAC 2 cut(s) 372, 731
DdeI CTNAG 2 cut(s) 219, 414
DpnI GATC 5 cut(s) 60, 450, 744, 997, 1179
DpnII GATC 5 cut(s) 58, 448, 742, 995, 1177
EaeI YGGCCR 2 cut(s) 1051, 1189
Ecl136II GAGCTC 2 cut(s) 301, 910
Eco24I GRGCYC 3 cut(s) 145, 303, 912
Eco53kI GAGCTC 2 cut(s) 301, 910
EcoICRI GAGCTC 2 cut(s) 301, 910
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 1171
EcoRII CCWGG 4 cut(s) 164, 340, 433, 860
EcoT38I GRGCYC 3 cut(s) 145, 303, 912
FaeI CATG 1 cut(s) 949
FatI CATG 1 cut(s) 945
FauI CCCGC 1 cut(s) 10
FauNDI CATATG 1 cut(s) 589
Fnu4HI GCNGC 7 cut(s) 23, 66, 113, 336, 398, 714, 934
FokI GGATG 1 cut(s) 906
FriOI GRGCYC 3 cut(s) 145, 303, 912
Fsp4HI GCNGC 7 cut(s) 23, 66, 113, 336, 398, 714, 934
FspBI CTAG 2 cut(s) 1227, 1251
GluI GCNGC 7 cut(s) 23, 66, 113, 336, 398, 714, 934
GsaI CCCAGC 2 cut(s) 163, 819
HaeIII GGCC 7 cut(s) 143, 164, 170, 207, 860, 1053, 1191
HapII CCGG 5 cut(s) 62, 916, 990, 1218, 1255
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 949
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 2 cut(s) 877, 900
HpaII CCGG 5 cut(s) 62, 916, 990, 1218, 1255
HphI GGTGA 1 cut(s) 760
Hpy166II GTNNAC 1 cut(s) 316
Hpy188III TCNNGA 7 cut(s) 304, 500, 536, 600, 838, 999, 1323
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 3 cut(s) 30, 229, 232
HpyCH4III ACNGT 3 cut(s) 1082, 1145, 1310
HpyCH4IV ACGT 3 cut(s) 90, 227, 867
HpyCH4V TGCA 5 cut(s) 87, 112, 625, 701, 897
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 156, 176, 242, 307, 942
HpyF3I CTNAG 2 cut(s) 219, 414
HpySE526I ACGT 3 cut(s) 90, 227, 867
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 949
Kzo9I GATC 5 cut(s) 58, 448, 742, 995, 1177
LmnI GCTCC 3 cut(s) 261, 292, 915
Lsp1109I GCAGC 7 cut(s) 9, 52, 124, 347, 409, 700, 945
LweI GCATC 2 cut(s) 507, 884
MaeI CTAG 2 cut(s) 1227, 1251
MaeII ACGT 3 cut(s) 90, 227, 867
MalI GATC 5 cut(s) 60, 450, 744, 997, 1179
MboI GATC 5 cut(s) 58, 448, 742, 995, 1177
MboII GAAGA 2 cut(s) 67, 832
MflI RGATCY 2 cut(s) 58, 995
MhlI GDGCHC 6 cut(s) 129, 145, 303, 431, 661, 912
MlsI TGGCCA 1 cut(s) 1053
MluCI AATT 9 cut(s) 93, 151, 472, 580, 772, 1039, 1171, 1265, 1300
MluNI TGGCCA 1 cut(s) 1053
MmeI TCCRAC 2 cut(s) 8, 314
Mox20I TGGCCA 1 cut(s) 1053
MscI TGGCCA 1 cut(s) 1053
MseI TTAA 3 cut(s) 33, 522, 557
MslI CAYNNNNRTG 3 cut(s) 612, 981, 1059
Msp20I TGGCCA 1 cut(s) 1053
MspI CCGG 5 cut(s) 62, 916, 990, 1218, 1255
MspR9I CCNGG 6 cut(s) 166, 342, 435, 862, 916, 991
MvaI CCWGG 4 cut(s) 166, 342, 435, 862
MvnI CGCG 2 cut(s) 305, 885
MwoI GCNNNNNNNGC 6 cut(s) 14, 156, 176, 242, 307, 942
NciI CCSGG 2 cut(s) 916, 991
NdeI CATATG 1 cut(s) 589
NdeII GATC 5 cut(s) 58, 448, 742, 995, 1177
NlaIII CATG 1 cut(s) 949
NlaIV GGNNCC 6 cut(s) 60, 126, 142, 143, 288, 988
NruI TCGCGA 1 cut(s) 305
NspI RCATGY 1 cut(s) 949
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 799
PfeI GAWTC 2 cut(s) 877, 900
PkrI GCNGC 7 cut(s) 24, 67, 114, 337, 399, 715, 935
Psp124BI GAGCTC 2 cut(s) 303, 912
Psp6I CCWGG 4 cut(s) 164, 340, 433, 860
PspFI CCCAGC 2 cut(s) 159, 815
PspGI CCWGG 4 cut(s) 164, 340, 433, 860
PspN4I GGNNCC 6 cut(s) 60, 126, 142, 143, 288, 988
PspOMI GGGCCC 1 cut(s) 141
PspPI GGNCC 4 cut(s) 141, 142, 162, 168
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 58, 995
RruI TCGCGA 1 cut(s) 305
RsaI GTAC 2 cut(s) 373, 732
RsaNI GTAC 2 cut(s) 372, 731
RseI CAYNNNNRTG 3 cut(s) 612, 981, 1059
SacI GAGCTC 2 cut(s) 303, 912
SaqAI TTAA 3 cut(s) 33, 522, 557
SatI GCNGC 7 cut(s) 23, 66, 113, 336, 398, 714, 934
Sau3AI GATC 5 cut(s) 58, 448, 742, 995, 1177
Sau96I GGNCC 4 cut(s) 141, 142, 162, 168
ScrFI CCNGG 6 cut(s) 166, 342, 435, 862, 916, 991
SduI GDGCHC 6 cut(s) 129, 145, 303, 431, 661, 912
SfaNI GCATC 2 cut(s) 507, 884
SmiMI CAYNNNNRTG 3 cut(s) 612, 981, 1059
Sse9I AATT 9 cut(s) 93, 151, 472, 580, 772, 1039, 1171, 1265, 1300
SsiI CCGC 3 cut(s) 17, 53, 1125
SspMI CTAG 2 cut(s) 1227, 1251
SstI GAGCTC 2 cut(s) 303, 912
StyD4I CCNGG 6 cut(s) 164, 340, 433, 860, 914, 989
TaaI ACNGT 3 cut(s) 1082, 1145, 1310
TaiI ACGT 3 cut(s) 93, 230, 870
TaqI TCGA 2 cut(s) 456, 687
TaqII GACCGA 1 cut(s) 783
TasI AATT 9 cut(s) 93, 151, 472, 580, 772, 1039, 1171, 1265, 1300
TfiI GAWTC 2 cut(s) 877, 900
Tru1I TTAA 3 cut(s) 33, 522, 557
Tru9I TTAA 3 cut(s) 33, 522, 557
TscAI CASTG 1 cut(s) 943
TseI GCWGC 7 cut(s) 22, 65, 112, 335, 397, 713, 933
TspDTI ATGAA 3 cut(s) 481, 519, 779
TspRI CASTG 1 cut(s) 943
XapI RAATTY 4 cut(s) 472, 1171, 1265, 1300
XceI RCATGY 1 cut(s) 949
XcmI CCANNNNNNNNNTGG 1 cut(s) 742
XspI CTAG 2 cut(s) 1227, 1251
ZraI GACGTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.