Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

76164351 .. 76166737

Gene Structure 2387 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG531900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCCGCCTTTCATTGTTGGGGACAATGATCAGAAATTAGCAGACGGAATTTCCCTGTATTCTATTGTTGCGGAATCATATGGAAAAGCATCGATCCTTGGACCACTTATAACAGAACATGCAAAAGGAGGGAAGTGCATTATTTTTACTCAGAGAAAACGTGATGCAGATAATTTGGCATATGCCCTGTCAAGAAGCCATAACTGTGAGGCTTTGCACGGGGATATTTCACAACAGCAGACGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATCTGGTGATACACTATGAGCTTCCAAACAATTCAGAGATATTTGTTCATCAGTCAGGGCGAACAGGTCGTGCTGGGAAGAAAGGAACTGCTATCCTGATTTACTCACAAAATCAGGCCAGGAACGTCCAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCTCCACCGGATTGCTGTTGGTAGCAGCAGTGTGAGTATGTTCTCTGACAGAGGTAGTAGCGGTGGTCATTTTGGTGGTTCCGGGGGATCTGGATATGGTCGTCCAGCAAACCGAGGTGGAAACTTTGGTAATTCAGGTTTTGGCCGTTCTGGTGGTTCTGACCGTTCCAATGGTTTTGGAGGGTTTGGTGGTTCAGACCATTCAAGCGGTTTTGGTGGTGCAGACCGTTCAAGTGGTTTTGGAGGGTTTGGTAATTCTGATCGTTCAAGTGGCCGTTCAGGTGGGTTTGGAGGTCGTTCCGGTGGTTCTAGGGGCTTTGGTGGGAATAGTTCTAGCCAGTTTGGAAGCTTTGGGAAAGACAATGGTTTCACGGGGTTTGGAAATTCTGACTGTTCAAGTGGTTCGGGAGGGTTTGGTAGTTCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

310

Amino Acids

31.98

Weight (kDa)

8.94

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	29 - 137	3.5e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	110
AccII	CGCG	1 cut(s)	477
AciI	CCGC	4 cut(s)	5, 71, 561, 708
AclWI	GGATC	2 cut(s)	88, 595
AcoI	YGGCCR	2 cut(s)	643, 772
AcsI	RAATTY	2 cut(s)	48, 883
AfaI	GTAC	1 cut(s)	324
AgsI	TTSAA	5 cut(s)	473, 705, 732, 768, 897
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	3 cut(s)	355, 502, 849
AluI	AGCT	3 cut(s)	355, 502, 849
Alw21I	GWGCWC	1 cut(s)	504
AlwI	GGATC	2 cut(s)	88, 595
AoxI	GGCC	3 cut(s)	450, 643, 772
ApeKI	GCWGC	2 cut(s)	305, 525
ApoI	RAATTY	2 cut(s)	48, 883
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	1 cut(s)	583
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	504
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	504
BbvI	GCAGC	2 cut(s)	292, 537
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	630, 759
BciT130I	CCWGG	1 cut(s)	454
BclI	TGATCA	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	583
BfaI	CTAG	2 cut(s)	810, 834
BisI	GCNGC	3 cut(s)	5, 306, 526
BlsI	GCNGC	3 cut(s)	6, 307, 527
Bme1390I	CCNGG	2 cut(s)	454, 583
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	2 cut(s)	454, 583
BmsI	GCATC	3 cut(s)	98, 154, 476
BpuMI	CCSGG	1 cut(s)	583
Bsa29I	ATCGAT	1 cut(s)	92
BsaJI	CCNNGG	3 cut(s)	97, 582, 613
BsaWI	WCCGGW	2 cut(s)	507, 800
Bse1I	ACTGG	1 cut(s)	838
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	92
BseDI	CCNNGG	3 cut(s)	97, 582, 613
BseGI	GGATG	1 cut(s)	491
BseMII	CTCAG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	838
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	292, 537
BseYI	CCCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	452, 645, 774
BshVI	ATCGAT	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	504
BsiSI	CCGG	3 cut(s)	508, 582, 801
BslFI	GGGAC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	452, 645, 774
Bsp1286I	GDGCHC	2 cut(s)	253, 504
Bsp143I	GATC	5 cut(s)	28, 93, 334, 587, 760
BspACI	CCGC	4 cut(s)	5, 71, 561, 708
BspANI	GGCC	3 cut(s)	452, 645, 774
BspCNI	CTCAG	1 cut(s)	163
BspDI	ATCGAT	1 cut(s)	92
BspFNI	CGCG	1 cut(s)	477
BspLI	GGNNCC	1 cut(s)	580
BspPI	GGATC	2 cut(s)	88, 595
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	3 cut(s)	97, 582, 613
BssMI	GATC	5 cut(s)	28, 93, 334, 587, 760
BssSI	CACGAG	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	97
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	4 cut(s)	206, 665, 728, 893
BstDEI	CTNAG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	477
BstKTI	GATC	5 cut(s)	31, 96, 337, 590, 763
BstMBI	GATC	5 cut(s)	28, 93, 334, 587, 760
BstNI	CCWGG	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	452, 581
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	292, 537
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	452, 645, 774
BsuTUI	ATCGAT	1 cut(s)	92
BtgZI	GCGATG	1 cut(s)	492
BtsCI	GGATG	1 cut(s)	491
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
Cfr13I	GGNCC	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	5 cut(s)	30, 95, 336, 589, 762
DpnII	GATC	5 cut(s)	28, 93, 334, 587, 760
EaeI	YGGCCR	2 cut(s)	643, 772
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	502
EcoICRI	GAGCTC	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	118
FauNDI	CATATG	2 cut(s)	79, 181
FbaI	TGATCA	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	5, 306, 526
FokI	GGATG	1 cut(s)	498
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	3 cut(s)	5, 306, 526
FspBI	CTAG	2 cut(s)	810, 834
GluI	GCNGC	3 cut(s)	5, 306, 526
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	452, 645, 774
HapII	CCGG	3 cut(s)	508, 582, 801
Hin1II	CATG	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	3 cut(s)	74, 469, 492
HpaII	CCGG	3 cut(s)	508, 582, 801
HphI	GGTGA	1 cut(s)	352
Hpy188III	TCNNGA	4 cut(s)	192, 430, 591, 906
HpyCH4III	ACNGT	4 cut(s)	206, 665, 728, 893
HpyCH4IV	ACGT	2 cut(s)	160, 459
HpyCH4V	TGCA	7 cut(s)	122, 138, 167, 217, 293, 489, 722
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	160, 459
Hsp92II	CATG	1 cut(s)	122
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	5 cut(s)	28, 93, 334, 587, 760
LmnI	GCTCC	1 cut(s)	507
Lsp1109I	GCAGC	2 cut(s)	292, 537
LweI	GCATC	3 cut(s)	98, 154, 476
MaeI	CTAG	2 cut(s)	810, 834
MaeII	ACGT	2 cut(s)	160, 459
MalI	GATC	5 cut(s)	30, 95, 336, 589, 762
MboI	GATC	5 cut(s)	28, 93, 334, 587, 760
MboII	GAAGA	1 cut(s)	424
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	2 cut(s)	253, 504
MluCI	AATT	7 cut(s)	35, 48, 172, 364, 631, 754, 883
MnlI	CCTC	8 cut(s)	122, 202, 545, 608, 674, 737, 785, 902
MslI	CAYNNNNRTG	2 cut(s)	204, 573
MspI	CCGG	3 cut(s)	508, 582, 801
MspR9I	CCNGG	2 cut(s)	454, 583
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	477
NciI	CCSGG	1 cut(s)	583
NdeI	CATATG	2 cut(s)	79, 181
NdeII	GATC	5 cut(s)	28, 93, 334, 587, 760
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	1 cut(s)	580
NspI	RCATGY	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	74, 469, 492
PkrI	GCNGC	3 cut(s)	6, 307, 527
PsiI	TTATAA	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	204, 573
SacI	GAGCTC	1 cut(s)	504
SatI	GCNGC	3 cut(s)	5, 306, 526
Sau3AI	GATC	5 cut(s)	28, 93, 334, 587, 760
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	454, 583
SduI	GDGCHC	2 cut(s)	253, 504
SfaNI	GCATC	3 cut(s)	98, 154, 476
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	204, 573
Sse9I	AATT	7 cut(s)	35, 48, 172, 364, 631, 754, 883
SsiI	CCGC	4 cut(s)	5, 71, 561, 708
SspMI	CTAG	2 cut(s)	810, 834
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	452, 581
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	4 cut(s)	206, 665, 728, 893
TaiI	ACGT	2 cut(s)	163, 462
TaqI	TCGA	2 cut(s)	92, 279
TasI	AATT	7 cut(s)	35, 48, 172, 364, 631, 754, 883
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	3 cut(s)	74, 469, 492
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	2 cut(s)	305, 525
TspDTI	ATGAA	1 cut(s)	371
TspGWI	ACGGA	2 cut(s)	60, 257
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	48, 883
XceI	RCATGY	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	810, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.