Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

69082121 .. 69085268

Gene Structure 3148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTCTGACAAGAGAGCTGGCGAAGCAGGTTGACAAGGAGTTCCACGAGGCAGCACCTGGCTTGGATACTATTTGTGTGTATGGTGGTACGCCCATTGGAAACGAAATCAGGCAGCTTGGCTATGGAATGTGGCTGTGGCTGTGGGCACACCGGGCTGTTGGGGGCAATGATCAGAAATTAGCAGATGGAATTTCCCTGTATTCTATTGCTGCGGAATCATGTGGAAAAGCATCGATCCTTGGACCACTTATAACACAACATGCAAAAGGAGGGAAGTGCATTATTTTTACTCAGAGAAAACGTGATGCAGATAATTTGGCATATGCCCTGTCAAGAAGCCATAAATGTGAGGCTTTGCACGGGGATATTTCACAAAAGCATAGGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTGATACACTATGAGCTTCGAAACAATTCCGAAATATTTGTTCATCGGTCAGGGCGAACAGGTCGTGCTGGGAAGAAAGGAAGTGCTATTCTGATTTACTCACAAAATCAGGCCAGGAACGTCCACATGATTCAACGCGATGTAGGATGCAGATTCACAGAGATTGCTGTTGATAGCAGCAGTGCAAGCATGTTCTCTGACAGAGGTAGTAGCGGTGGTCATTTTGGTGGTTCCGGAGGTGGAAACTTTGGTAATTCAGGTTTTGGCCGTTCTGGTGGTTTTGGTGACCGTTTAAGTGGTTTTGGAGGGTTTGGTAGTTCTGATCGTTCAAGTGGCCATTCAGGTGGTTTTGGAGATCGTTCCGGTGGTTCTAGGGGAATTGGTGGGAATAATGCTAGCCGGTTTGGAAGCTTTGGGAAAGACAGTGGTTTCACAGGGTTTGGAAATTCTGATCGTTCAAGTGGTTCGGGAGGGTTTGGTAGTATTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

323

Amino Acids

33.95

Weight (kDa)

9.37

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	77 - 182	1.4e-27	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	19
AccII	CGCG	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	707
AciI	CCGC	2 cut(s)	215, 687
AclWI	GGATC	1 cut(s)	232
AcoI	YGGCCR	2 cut(s)	739, 808
AcsI	RAATTY	2 cut(s)	192, 919
AfaI	GTAC	2 cut(s)	91, 468
AgsI	TTSAA	3 cut(s)	608, 804, 933
AjnI	CCWGG	2 cut(s)	58, 587
AluBI	AGCT	4 cut(s)	19, 118, 490, 885
AluI	AGCT	4 cut(s)	19, 118, 490, 885
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	59
Aor13HI	TCCGGA	1 cut(s)	707
AoxI	GGCC	3 cut(s)	585, 739, 808
ApeKI	GCWGC	5 cut(s)	53, 115, 212, 449, 651
ApoI	RAATTY	2 cut(s)	192, 919
Asp700I	GAANNNNTTC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	770
AsuII	TTCGAA	1 cut(s)	493
AsuNHI	GCTAGC	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	2 cut(s)	151, 397
BalI	TGGCCA	1 cut(s)	810
BauI	CACGAG	2 cut(s)	47, 453
BbvI	GCAGC	5 cut(s)	65, 127, 199, 436, 663
BccI	CCATC	2 cut(s)	182, 407
BceAI	ACGGC	1 cut(s)	726
BciT130I	CCWGG	2 cut(s)	60, 589
BciVI	GTATCC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	846, 870
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	5 cut(s)	54, 116, 213, 450, 652
BlsI	GCNGC	5 cut(s)	55, 117, 214, 451, 653
Bme1390I	CCNGG	3 cut(s)	60, 155, 589
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	706
BmrFI	CCNGG	3 cut(s)	60, 155, 589
BmsI	GCATC	3 cut(s)	242, 298, 611
BmtI	GCTAGC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	493
BpuMI	CCSGG	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	241
BsaWI	WCCGGW	2 cut(s)	707, 836
Bse118I	RCCGGY	1 cut(s)	873
Bse3DI	GCAATG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	707
BseBI	CCWGG	2 cut(s)	60, 589
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	1 cut(s)	626
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	308
BseSI	GKGCMC	2 cut(s)	151, 397
BseXI	GCAGC	5 cut(s)	65, 127, 199, 436, 663
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	612
BshFI	GGCC	3 cut(s)	587, 741, 810
BshVI	ATCGAT	1 cut(s)	236
BsiSI	CCGG	4 cut(s)	154, 708, 837, 874
BsnI	GGCC	3 cut(s)	587, 741, 810
Bsp119I	TTCGAA	1 cut(s)	493
Bsp1286I	GDGCHC	2 cut(s)	151, 397
Bsp13I	TCCGGA	1 cut(s)	707
Bsp143I	GATC	5 cut(s)	172, 237, 796, 829, 925
BspACI	CCGC	2 cut(s)	215, 687
BspANI	GGCC	3 cut(s)	587, 741, 810
BspCNI	CTCAG	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	236
BspEI	TCCGGA	1 cut(s)	707
BspFNI	CGCG	1 cut(s)	612
BspLI	GGNNCC	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	873
BspPI	GGATC	1 cut(s)	232
BspT104I	TTCGAA	1 cut(s)	493
BsrDI	GCAATG	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	873
BssAI	RCCGGY	1 cut(s)	873
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	5 cut(s)	172, 237, 796, 829, 925
BssSI	CACGAG	2 cut(s)	47, 453
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	2 cut(s)	47, 453
Bst2UI	CCWGG	2 cut(s)	60, 589
Bst4CI	ACNGT	2 cut(s)	764, 899
BstBI	TTCGAA	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	21, 661, 871
BstDEI	CTNAG	1 cut(s)	294
BstEII	GGTNACC	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	626
BstFNI	CGCG	1 cut(s)	612
BstKTI	GATC	5 cut(s)	175, 240, 799, 832, 928
BstMBI	GATC	5 cut(s)	172, 237, 796, 829, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 155, 660
BstNI	CCWGG	2 cut(s)	60, 589
BstNSI	RCATGY	2 cut(s)	266, 667
BstPI	GGTNACC	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	58, 153, 587
BstSLI	GKGCMC	2 cut(s)	151, 397
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	5 cut(s)	65, 127, 199, 436, 663
BstXI	CCANNNNNNTGG	1 cut(s)	818
Bsu15I	ATCGAT	1 cut(s)	236
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	587, 741, 810
BsuTUI	ATCGAT	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	626
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	2 cut(s)	661, 904
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	21, 661, 871
CaiI	CAGNNNCTG	1 cut(s)	59
Cfr10I	RCCGGY	1 cut(s)	873
Cfr13I	GGNCC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	236
Csp6I	GTAC	2 cut(s)	90, 467
CviAII	CATG	4 cut(s)	222, 263, 601, 664
CviQI	GTAC	2 cut(s)	90, 467
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	5 cut(s)	174, 239, 798, 831, 927
DpnII	GATC	5 cut(s)	172, 237, 796, 829, 925
EaeI	YGGCCR	2 cut(s)	739, 808
Eco130I	CCWWGG	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	758
EcoO65I	GGTNACC	1 cut(s)	758
EcoRII	CCWGG	2 cut(s)	58, 587
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	4 cut(s)	225, 266, 604, 667
FatI	CATG	4 cut(s)	221, 262, 600, 663
FauNDI	CATATG	1 cut(s)	325
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	5 cut(s)	54, 116, 213, 450, 652
FokI	GGATG	1 cut(s)	633
Fsp4HI	GCNGC	5 cut(s)	54, 116, 213, 450, 652
FspBI	CTAG	2 cut(s)	846, 870
GluI	GCNGC	5 cut(s)	54, 116, 213, 450, 652
GsaI	CCCAGC	1 cut(s)	546
HaeIII	GGCC	3 cut(s)	587, 741, 810
HapII	CCGG	4 cut(s)	154, 708, 837, 874
Hin1II	CATG	4 cut(s)	225, 266, 604, 667
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	883
HinfI	GANTC	3 cut(s)	218, 604, 627
HpaII	CCGG	4 cut(s)	154, 708, 837, 874
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	2 cut(s)	34, 598
Hpy188I	TCNGA	9 cut(s)	9, 177, 297, 410, 505, 567, 673, 796, 925
Hpy188III	TCNNGA	3 cut(s)	336, 708, 942
Hpy8I	GTNNAC	2 cut(s)	34, 598
HpyCH4III	ACNGT	2 cut(s)	764, 899
HpyCH4IV	ACGT	2 cut(s)	304, 594
HpyCH4V	TGCA	7 cut(s)	266, 282, 311, 361, 437, 624, 659
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 155, 660
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	304, 594
Hsp92II	CATG	4 cut(s)	225, 266, 604, 667
Kpn2I	TCCGGA	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	5 cut(s)	172, 237, 796, 829, 925
Lsp1109I	GCAGC	5 cut(s)	65, 127, 199, 436, 663
LweI	GCATC	3 cut(s)	242, 298, 611
MaeI	CTAG	2 cut(s)	846, 870
MaeII	ACGT	2 cut(s)	304, 594
MaeIII	GTNAC	1 cut(s)	758
MalI	GATC	5 cut(s)	174, 239, 798, 831, 927
MboI	GATC	5 cut(s)	172, 237, 796, 829, 925
MboII	GAAGA	1 cut(s)	559
MhlI	GDGCHC	2 cut(s)	151, 397
MlsI	TGGCCA	1 cut(s)	810
MluCI	AATT	7 cut(s)	179, 192, 316, 499, 727, 852, 919
MluNI	TGGCCA	1 cut(s)	810
MnlI	CCTC	7 cut(s)	43, 266, 346, 671, 704, 773, 938
Mox20I	TGGCCA	1 cut(s)	810
MroI	TCCGGA	1 cut(s)	707
MroXI	GAANNNNTTC	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	810
MseI	TTAA	1 cut(s)	767
MslI	CAYNNNNRTG	3 cut(s)	348, 699, 816
Msp20I	TGGCCA	1 cut(s)	810
MspI	CCGG	4 cut(s)	154, 708, 837, 874
MspR9I	CCNGG	3 cut(s)	60, 155, 589
MvaI	CCWGG	2 cut(s)	60, 589
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	3 cut(s)	25, 155, 660
NciI	CCSGG	1 cut(s)	155
NdeI	CATATG	1 cut(s)	325
NdeII	GATC	5 cut(s)	172, 237, 796, 829, 925
NheI	GCTAGC	1 cut(s)	869
NlaIII	CATG	4 cut(s)	225, 266, 604, 667
NlaIV	GGNNCC	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	758
NspI	RCATGY	2 cut(s)	266, 667
NspV	TTCGAA	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	526
PdmI	GAANNNNTTC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	218, 604, 627
PkrI	GCNGC	5 cut(s)	55, 117, 214, 451, 653
PsiI	TTATAA	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	58, 587
PspEI	GGTNACC	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	58, 587
PspN4I	GGNNCC	1 cut(s)	706
PspPI	GGNCC	1 cut(s)	245
PstNI	CAGNNNCTG	1 cut(s)	59
RsaI	GTAC	2 cut(s)	91, 468
RsaNI	GTAC	2 cut(s)	90, 467
RseI	CAYNNNNRTG	3 cut(s)	348, 699, 816
SaqAI	TTAA	1 cut(s)	767
SatI	GCNGC	5 cut(s)	54, 116, 213, 450, 652
Sau3AI	GATC	5 cut(s)	172, 237, 796, 829, 925
Sau96I	GGNCC	1 cut(s)	245
ScrFI	CCNGG	3 cut(s)	60, 155, 589
SduI	GDGCHC	2 cut(s)	151, 397
SfaNI	GCATC	3 cut(s)	242, 298, 611
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	3 cut(s)	348, 699, 816
Sse9I	AATT	7 cut(s)	179, 192, 316, 499, 727, 852, 919
SsiI	CCGC	2 cut(s)	215, 687
SspI	AATATT	1 cut(s)	510
SspMI	CTAG	2 cut(s)	846, 870
StyD4I	CCNGG	3 cut(s)	58, 153, 587
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	764, 899
TaiI	ACGT	2 cut(s)	307, 597
TaqI	TCGA	3 cut(s)	236, 423, 493
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	7 cut(s)	179, 192, 316, 499, 727, 852, 919
TfiI	GAWTC	3 cut(s)	218, 604, 627
Tru1I	TTAA	1 cut(s)	767
Tru9I	TTAA	1 cut(s)	767
TscAI	CASTG	2 cut(s)	661, 904
TseFI	GTSAC	1 cut(s)	758
TseI	GCWGC	5 cut(s)	53, 115, 212, 449, 651
Tsp45I	GTSAC	1 cut(s)	758
TspDTI	ATGAA	1 cut(s)	506
TspRI	CASTG	2 cut(s)	661, 904
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	192, 919
XceI	RCATGY	2 cut(s)	266, 667
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	2 cut(s)	846, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.