Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

68241511 .. 68243823

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G042030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCTCCGACAAGAGAGCTCGCGAAGCAGGTTGACAAGGAGTTCCACGAGGCAGCACCTGGCTTGGATACTATTTGTGTGTATGGTGGTACGCCCATTGGAAACCAAATCAGGCAGCTTGGCTATGGAACTGATGTGGCTGTGGGCACACCGGGGCGTATTATTGATCTAATCGATAGGGGTGCGTTGAATTTATCCGAAGTCCAGTTCATTGTTCTTGATGAAGCCGACGAGATGCTTAAAGTGGGATTTCAGGAGGCTGTTGAGACAATCTTAAAAGAGCGTGCCAAAGAAACGTCAGACCCTGATGTTCTCTGCTACAATGCCGCCTTTCATTACAAGTCTTACTCAGAAGTTGGGGACAATGATCAGAAATTAGCAGACGGAATTTCCCTGTATTCTATTGTTGCAGAATCATATGGAAAAGCATCGATCCTTGGACCACTTATAACAGAACATGCAAAAGGAGGGAAGTGCATTATTTTTACTCAGAGAAAACGTGATGCAGATAATTTGGCATATGCCCTGTCAAGAAGCCATAAATGTGAGGCTTTGCACAGGGATATTTCACAACAGCATAGGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATTTGGTGATACACTATGAGCTTCCAAACAATTCAGAGATATTTGTTCATCGGTCAGGGCGAACAGGTCGTGCTGGGAAGAAAGGAAGTGCTATCCTGATTTACTCACAAAATCAGGCCAGGAACGTCCAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCTCCCCCGGATTGCTGTTGATAGCAGCAGTGTAAGCATGTTCTCTGACAGAGGTAGTAGCGGTGGTCATTTTGGTGGTTCCGGGGGATCTGGATATGGTCGTCCAGCAAACCGAGGTGGAAACTTTGGTAATTCAGGTTTTGGCCGTTCTGGTGGTTTTGGTGGTTCTGACCGTTCCAATGGTTTTGGAAGGTTTGGTGGTTCAGACCATTCAAGCGGTTTTGGTGGTTCAGACCGTTCAAGTGGTTTTGGAGGGTTTGGTAATTCTGATCGTTCAAGTGGCCGTTCAGGTGGGTTTGGAGGTCGTTCCGGTGGTTCTAGGGGCTTTGGTGGGAATAGTTCTAGCCGGTTTGGAAGCTTTGGGAAAGACAATGGTTTCATGGGGTTTGGAAATTCTGACTGTTCAAGTGGTTCGGGAGGGTTTGGTAGTTCTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

426

Amino Acids

45.0

Weight (kDa)

7.14

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	1 - 112	6.8e-20	DEAD/DEAH box helicase
Helicase_C	PF00271	142 - 250	1.2e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	19
AccII	CGCG	2 cut(s)	23, 816
AciI	CCGC	3 cut(s)	327, 900, 1056
AclWI	GGATC	2 cut(s)	427, 934
AcoI	YGGCCR	2 cut(s)	982, 1120
AcsI	RAATTY	3 cut(s)	190, 387, 1231
AfaI	GTAC	2 cut(s)	91, 663
AgsI	TTSAA	6 cut(s)	190, 812, 1053, 1080, 1116, 1245
AjnI	CCWGG	2 cut(s)	58, 791
AluBI	AGCT	5 cut(s)	19, 118, 694, 841, 1197
AluI	AGCT	5 cut(s)	19, 118, 694, 841, 1197
Alw21I	GWGCWC	2 cut(s)	21, 843
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	427, 934
AlwNI	CAGNNNCTG	2 cut(s)	59, 305
AoxI	GGCC	3 cut(s)	789, 982, 1120
ApeKI	GCWGC	4 cut(s)	53, 115, 644, 864
ApoI	RAATTY	3 cut(s)	190, 387, 1231
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	3 cut(s)	153, 847, 922
AsuHPI	GGTGA	1 cut(s)	691
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	2 cut(s)	149, 592
BanII	GRGCYC	2 cut(s)	21, 843
BauI	CACGAG	2 cut(s)	47, 648
Bbv12I	GWGCWC	2 cut(s)	21, 843
BbvI	GCAGC	4 cut(s)	65, 127, 631, 876
BccI	CCATC	1 cut(s)	602
BceAI	ACGGC	2 cut(s)	969, 1107
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	2 cut(s)	60, 793
BciVI	GTATCC	1 cut(s)	61
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	3 cut(s)	153, 847, 922
BcoDI	GTCTC	1 cut(s)	260
BfaI	CTAG	2 cut(s)	1158, 1182
BfuAI	ACCTGC	1 cut(s)	19
BfuI	GTATCC	1 cut(s)	61
BisI	GCNGC	5 cut(s)	54, 116, 327, 645, 865
BlsI	GCNGC	5 cut(s)	55, 117, 328, 646, 866
Bme1390I	CCNGG	5 cut(s)	60, 153, 793, 847, 922
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmiI	GGNNCC	2 cut(s)	6, 919
BmrFI	CCNGG	5 cut(s)	60, 153, 793, 847, 922
BmsI	GCATC	4 cut(s)	225, 437, 493, 815
BpuMI	CCSGG	3 cut(s)	153, 847, 922
Bsa29I	ATCGAT	2 cut(s)	174, 431
BsaJI	CCNNGG	5 cut(s)	152, 436, 845, 921, 952
BsaWI	WCCGGW	1 cut(s)	1148
Bse118I	RCCGGY	1 cut(s)	1185
Bse1I	ACTGG	1 cut(s)	205
BseBI	CCWGG	2 cut(s)	60, 793
BseCI	ATCGAT	2 cut(s)	174, 431
BseDI	CCNNGG	5 cut(s)	152, 436, 845, 921, 952
BseGI	GGATG	1 cut(s)	830
BseMII	CTCAG	2 cut(s)	363, 503
BseNI	ACTGG	1 cut(s)	205
BseSI	GKGCMC	2 cut(s)	149, 592
BseXI	GCAGC	4 cut(s)	65, 127, 631, 876
BseYI	CCCAGC	1 cut(s)	746
Bsh1236I	CGCG	2 cut(s)	23, 816
BshFI	GGCC	3 cut(s)	791, 984, 1122
BshVI	ATCGAT	2 cut(s)	174, 431
BsiHKAI	GWGCWC	2 cut(s)	21, 843
BsiSI	CCGG	5 cut(s)	152, 847, 921, 1149, 1186
BslFI	GGGAC	1 cut(s)	374
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	3 cut(s)	791, 984, 1122
Bsp1286I	GDGCHC	4 cut(s)	21, 149, 592, 843
Bsp143I	GATC	5 cut(s)	166, 367, 432, 926, 1108
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	3 cut(s)	327, 900, 1056
BspANI	GGCC	3 cut(s)	791, 984, 1122
BspCNI	CTCAG	2 cut(s)	362, 502
BspDI	ATCGAT	2 cut(s)	174, 431
BspFNI	CGCG	2 cut(s)	23, 816
BspLI	GGNNCC	2 cut(s)	6, 919
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	427, 934
BsrFI	RCCGGY	1 cut(s)	1185
BsrI	ACTGG	1 cut(s)	205
BssAI	RCCGGY	1 cut(s)	1185
BssECI	CCNNGG	5 cut(s)	152, 436, 845, 921, 952
BssMI	GATC	5 cut(s)	166, 367, 432, 926, 1108
BssSI	CACGAG	2 cut(s)	47, 648
BssT1I	CCWWGG	1 cut(s)	436
Bst2BI	CACGAG	2 cut(s)	47, 648
Bst2UI	CCWGG	2 cut(s)	60, 793
Bst4CI	ACNGT	3 cut(s)	1013, 1076, 1241
BstC8I	GCNNGC	2 cut(s)	21, 285
BstDEI	CTNAG	2 cut(s)	349, 489
BstF5I	GGATG	1 cut(s)	830
BstFNI	CGCG	2 cut(s)	23, 816
BstKTI	GATC	5 cut(s)	169, 370, 435, 929, 1111
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	166, 367, 432, 926, 1108
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 873
BstNI	CCWGG	2 cut(s)	60, 793
BstNSI	RCATGY	2 cut(s)	461, 880
BstSCI	CCNGG	5 cut(s)	58, 151, 791, 845, 920
BstSLI	GKGCMC	2 cut(s)	149, 592
BstUI	CGCG	2 cut(s)	23, 816
BstV1I	GCAGC	4 cut(s)	65, 127, 631, 876
BstX2I	RGATCY	1 cut(s)	926
BstYI	RGATCY	1 cut(s)	926
Bsu15I	ATCGAT	2 cut(s)	174, 431
BsuI	GTATCC	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	791, 984, 1122
BsuTUI	ATCGAT	2 cut(s)	174, 431
BtgZI	GCGATG	1 cut(s)	831
BtsCI	GGATG	1 cut(s)	830
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	1 cut(s)	874
BtuMI	TCGCGA	1 cut(s)	23
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	21, 285
CaiI	CAGNNNCTG	2 cut(s)	59, 305
Cfr10I	RCCGGY	1 cut(s)	1185
Cfr13I	GGNCC	1 cut(s)	440
ClaI	ATCGAT	2 cut(s)	174, 431
Csp6I	GTAC	2 cut(s)	90, 662
CviAII	CATG	3 cut(s)	458, 877, 1219
CviQI	GTAC	2 cut(s)	90, 662
DdeI	CTNAG	2 cut(s)	349, 489
DpnI	GATC	5 cut(s)	168, 369, 434, 928, 1110
DpnII	GATC	5 cut(s)	166, 367, 432, 926, 1108
EaeI	YGGCCR	2 cut(s)	982, 1120
Ecl136II	GAGCTC	2 cut(s)	19, 841
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	2 cut(s)	21, 843
Eco47I	GGWCC	1 cut(s)	440
Eco53kI	GAGCTC	2 cut(s)	19, 841
EcoICRI	GAGCTC	2 cut(s)	19, 841
EcoRII	CCWGG	2 cut(s)	58, 791
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	2 cut(s)	21, 843
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	3 cut(s)	461, 880, 1222
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	3 cut(s)	457, 876, 1218
FauNDI	CATATG	2 cut(s)	418, 520
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	5 cut(s)	54, 116, 327, 645, 865
FokI	GGATG	1 cut(s)	837
FriOI	GRGCYC	2 cut(s)	21, 843
Fsp4HI	GCNGC	5 cut(s)	54, 116, 327, 645, 865
FspBI	CTAG	2 cut(s)	1158, 1182
GluI	GCNGC	5 cut(s)	54, 116, 327, 645, 865
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	791, 984, 1122
HapII	CCGG	5 cut(s)	152, 847, 921, 1149, 1186
Hin1II	CATG	3 cut(s)	461, 880, 1222
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	1195
HinfI	GANTC	3 cut(s)	413, 808, 831
HpaII	CCGG	5 cut(s)	152, 847, 921, 1149, 1186
HphI	GGTGA	1 cut(s)	691
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188III	TCNNGA	7 cut(s)	22, 218, 254, 531, 769, 930, 1254
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	1023
HpyCH4III	ACNGT	3 cut(s)	1013, 1076, 1241
HpyCH4IV	ACGT	3 cut(s)	296, 499, 798
HpyCH4V	TGCA	7 cut(s)	410, 461, 477, 506, 556, 632, 828
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 873
HpyF3I	CTNAG	2 cut(s)	349, 489
HpySE526I	ACGT	3 cut(s)	296, 499, 798
Hsp92II	CATG	3 cut(s)	461, 880, 1222
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	5 cut(s)	166, 367, 432, 926, 1108
LmnI	GCTCC	2 cut(s)	10, 846
Lsp1109I	GCAGC	4 cut(s)	65, 127, 631, 876
LweI	GCATC	4 cut(s)	225, 437, 493, 815
MaeI	CTAG	2 cut(s)	1158, 1182
MaeII	ACGT	3 cut(s)	296, 499, 798
MalI	GATC	5 cut(s)	168, 369, 434, 928, 1110
MboI	GATC	5 cut(s)	166, 367, 432, 926, 1108
MboII	GAAGA	1 cut(s)	763
MflI	RGATCY	1 cut(s)	926
MhlI	GDGCHC	4 cut(s)	21, 149, 592, 843
MluCI	AATT	8 cut(s)	190, 374, 387, 511, 703, 970, 1102, 1231
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	9 cut(s)	43, 250, 461, 541, 884, 947, 1085, 1133, 1250
MseI	TTAA	2 cut(s)	240, 275
MslI	CAYNNNNRTG	2 cut(s)	543, 912
MspI	CCGG	5 cut(s)	152, 847, 921, 1149, 1186
MspR9I	CCNGG	5 cut(s)	60, 153, 793, 847, 922
MvaI	CCWGG	2 cut(s)	60, 793
MvnI	CGCG	2 cut(s)	23, 816
MwoI	GCNNNNNNNGC	2 cut(s)	25, 873
NciI	CCSGG	3 cut(s)	153, 847, 922
NdeI	CATATG	2 cut(s)	418, 520
NdeII	GATC	5 cut(s)	166, 367, 432, 926, 1108
NlaIII	CATG	3 cut(s)	461, 880, 1222
NlaIV	GGNNCC	2 cut(s)	6, 919
NruI	TCGCGA	1 cut(s)	23
NspI	RCATGY	2 cut(s)	461, 880
PcsI	WCGNNNNNNNCGW	1 cut(s)	730
PfeI	GAWTC	3 cut(s)	413, 808, 831
PkrI	GCNGC	5 cut(s)	55, 117, 328, 646, 866
PsiI	TTATAA	1 cut(s)	449
Psp124BI	GAGCTC	2 cut(s)	21, 843
Psp6I	CCWGG	2 cut(s)	58, 791
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	2 cut(s)	58, 791
PspN4I	GGNNCC	2 cut(s)	6, 919
PspPI	GGNCC	1 cut(s)	440
PstNI	CAGNNNCTG	2 cut(s)	59, 305
PsuI	RGATCY	1 cut(s)	926
RruI	TCGCGA	1 cut(s)	23
RsaI	GTAC	2 cut(s)	91, 663
RsaNI	GTAC	2 cut(s)	90, 662
RseI	CAYNNNNRTG	2 cut(s)	543, 912
SacI	GAGCTC	2 cut(s)	21, 843
SaqAI	TTAA	2 cut(s)	240, 275
SatI	GCNGC	5 cut(s)	54, 116, 327, 645, 865
Sau3AI	GATC	5 cut(s)	166, 367, 432, 926, 1108
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	5 cut(s)	60, 153, 793, 847, 922
SduI	GDGCHC	4 cut(s)	21, 149, 592, 843
SfaNI	GCATC	4 cut(s)	225, 437, 493, 815
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	2 cut(s)	543, 912
Sse9I	AATT	8 cut(s)	190, 374, 387, 511, 703, 970, 1102, 1231
SsiI	CCGC	3 cut(s)	327, 900, 1056
SspMI	CTAG	2 cut(s)	1158, 1182
SstI	GAGCTC	2 cut(s)	21, 843
StyD4I	CCNGG	5 cut(s)	58, 151, 791, 845, 920
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	3 cut(s)	1013, 1076, 1241
TaiI	ACGT	3 cut(s)	299, 502, 801
TaqI	TCGA	3 cut(s)	174, 431, 618
TaqII	GACCGA	1 cut(s)	714
TasI	AATT	8 cut(s)	190, 374, 387, 511, 703, 970, 1102, 1231
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	3 cut(s)	413, 808, 831
Tru1I	TTAA	2 cut(s)	240, 275
Tru9I	TTAA	2 cut(s)	240, 275
TscAI	CASTG	1 cut(s)	874
TseI	GCWGC	4 cut(s)	53, 115, 644, 864
TspDTI	ATGAA	5 cut(s)	199, 237, 323, 710, 1207
TspGWI	ACGGA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	874
VpaK11BI	GGWCC	1 cut(s)	440
XapI	RAATTY	3 cut(s)	190, 387, 1231
XceI	RCATGY	2 cut(s)	461, 880
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XspI	CTAG	2 cut(s)	1158, 1182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.