DEAD-box ATP-dependent RNA helicase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 946 |
| AccII | CGCG | 1 cut(s) | 1741 |
| AccIII | TCCGGA | 1 cut(s) | 1161 |
| AclWI | GGATC | 1 cut(s) | 146 |
| AcoI | YGGCCR | 1 cut(s) | 595 |
| AcsI | RAATTY | 4 cut(s) | 230, 320, 883, 1664 |
| AcuI | CTGAAG | 2 cut(s) | 374, 1905 |
| AfaI | GTAC | 3 cut(s) | 309, 375, 1330 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 304, 497, 553, 668, 685, 686, 728, 1235 |
| AhlI | ACTAGT | 1 cut(s) | 1823 |
| AjnI | CCWGG | 3 cut(s) | 99, 367, 1228 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 621, 622, 653, 654 |
| Alw21I | GWGCWC | 1 cut(s) | 1039 |
| Alw26I | GTCTC | 9 cut(s) | 101, 520, 547, 805, 1073, 1328, 1545, 1590, 1850 |
| Alw44I | GTGCAC | 1 cut(s) | 1035 |
| AlwI | GGATC | 1 cut(s) | 146 |
| Ama87I | CYCGRG | 1 cut(s) | 808 |
| Aor13HI | TCCGGA | 1 cut(s) | 1161 |
| AoxI | GGCC | 6 cut(s) | 180, 189, 354, 488, 595, 659 |
| ApaLI | GTGCAC | 1 cut(s) | 1035 |
| ApeKI | GCWGC | 9 cut(s) | 589, 842, 1058, 1274, 1304, 1430, 1676, 1736, 1916 |
| ApoI | RAATTY | 4 cut(s) | 230, 320, 883, 1664 |
| AspLEI | GCGC | 1 cut(s) | 1741 |
| AspS9I | GGNCC | 3 cut(s) | 181, 190, 731 |
| AsuC2I | CCSGG | 1 cut(s) | 669 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 161, 196, 1350, 1375 |
| AvaI | CYCGRG | 1 cut(s) | 808 |
| AvaII | GGWCC | 1 cut(s) | 731 |
| BaeGI | GKGCMC | 2 cut(s) | 1039, 1514 |
| BalI | TGGCCA | 1 cut(s) | 597 |
| BanII | GRGCYC | 1 cut(s) | 65 |
| BbsI | GAAGAC | 1 cut(s) | 1169 |
| Bbv12I | GWGCWC | 1 cut(s) | 1039 |
| BbvI | GCAGC | 9 cut(s) | 601, 854, 1070, 1286, 1291, 1442, 1688, 1748, 1903 |
| BccI | CCATC | 3 cut(s) | 163, 730, 1562 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1047, 1081 |
| BciT130I | CCWGG | 3 cut(s) | 101, 369, 1230 |
| BclI | TGATCA | 1 cut(s) | 748 |
| BcnI | CCSGG | 1 cut(s) | 669 |
| BcoDI | GTCTC | 9 cut(s) | 101, 520, 547, 805, 1073, 1328, 1545, 1590, 1850 |
| BcuI | ACTAGT | 1 cut(s) | 1823 |
| BfaI | CTAG | 6 cut(s) | 855, 909, 1299, 1580, 1682, 1824 |
| BfuAI | ACCTGC | 1 cut(s) | 946 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 9 cut(s) | 590, 843, 1059, 1275, 1305, 1431, 1677, 1737, 1917 |
| BlsI | GCNGC | 9 cut(s) | 591, 844, 1060, 1276, 1306, 1432, 1678, 1738, 1918 |
| BmcAI | AGTACT | 1 cut(s) | 375 |
| Bme1390I | CCNGG | 4 cut(s) | 101, 369, 669, 1230 |
| Bme18I | GGWCC | 1 cut(s) | 731 |
| BmeT110I | CYCGRG | 1 cut(s) | 808 |
| BmgT120I | GGNCC | 3 cut(s) | 181, 190, 731 |
| BmiI | GGNNCC | 5 cut(s) | 64, 223, 692, 720, 732 |
| BmrFI | CCNGG | 4 cut(s) | 101, 369, 669, 1230 |
| BmsI | GCATC | 5 cut(s) | 105, 696, 860, 1304, 1675 |
| BpiI | GAAGAC | 1 cut(s) | 1169 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1617, 1649 |
| BpmI | CTGGAG | 1 cut(s) | 1464 |
| BpuMI | CCSGG | 1 cut(s) | 669 |
| BsaI | GGTCTC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 1 cut(s) | 1074 |
| BsaWI | WCCGGW | 1 cut(s) | 1161 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 304, 497, 553, 668, 685, 686, 728, 1235 |
| Bse1I | ACTGG | 4 cut(s) | 598, 635, 662, 734 |
| BseAI | TCCGGA | 1 cut(s) | 1161 |
| BseBI | CCWGG | 3 cut(s) | 101, 369, 1230 |
| BseDI | CCNNGG | 1 cut(s) | 1074 |
| BseGI | GGATG | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 304, 497, 553, 668, 685, 686, 728, 1235 |
| BseMII | CTCAG | 4 cut(s) | 492, 1298, 1339, 1848 |
| BseNI | ACTGG | 4 cut(s) | 598, 635, 662, 734 |
| BseSI | GKGCMC | 2 cut(s) | 1039, 1514 |
| BseXI | GCAGC | 9 cut(s) | 601, 854, 1070, 1286, 1291, 1442, 1688, 1748, 1903 |
| BsgI | GTGCAG | 1 cut(s) | 1755 |
| Bsh1236I | CGCG | 1 cut(s) | 1741 |
| BshFI | GGCC | 6 cut(s) | 182, 191, 356, 490, 597, 661 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1039 |
| BsiHKCI | CYCGRG | 1 cut(s) | 808 |
| BsiSI | CCGG | 2 cut(s) | 669, 1162 |
| BslFI | GGGAC | 1 cut(s) | 446 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 304, 497, 553, 668, 685, 686, 728, 1235 |
| BsmAI | GTCTC | 9 cut(s) | 101, 520, 547, 805, 1073, 1328, 1545, 1590, 1850 |
| BsmFI | GGGAC | 1 cut(s) | 446 |
| BsmI | GAATGC | 2 cut(s) | 529, 1245 |
| BsnI | GGCC | 6 cut(s) | 182, 191, 356, 490, 597, 661 |
| Bso31I | GGTCTC | 1 cut(s) | 101 |
| BsoBI | CYCGRG | 1 cut(s) | 808 |
| Bsp1286I | GDGCHC | 3 cut(s) | 65, 1039, 1514 |
| Bsp13I | TCCGGA | 1 cut(s) | 1161 |
| Bsp143I | GATC | 3 cut(s) | 151, 748, 1339 |
| BspANI | GGCC | 6 cut(s) | 182, 191, 356, 490, 597, 661 |
| BspCNI | CTCAG | 4 cut(s) | 491, 1297, 1338, 1847 |
| BspEI | TCCGGA | 1 cut(s) | 1161 |
| BspFNI | CGCG | 1 cut(s) | 1741 |
| BspLI | GGNNCC | 5 cut(s) | 64, 223, 692, 720, 732 |
| BspMI | ACCTGC | 1 cut(s) | 946 |
| BspPI | GGATC | 1 cut(s) | 146 |
| BspTNI | GGTCTC | 1 cut(s) | 101 |
| BsrI | ACTGG | 4 cut(s) | 598, 635, 662, 734 |
| BssECI | CCNNGG | 1 cut(s) | 1074 |
| BssMI | GATC | 3 cut(s) | 151, 748, 1339 |
| BssT1I | CCWWGG | 1 cut(s) | 1074 |
| Bst2UI | CCWGG | 3 cut(s) | 101, 369, 1230 |
| Bst4CI | ACNGT | 6 cut(s) | 178, 563, 1151, 1601, 1733, 1861 |
| Bst6I | CTCTTC | 2 cut(s) | 99, 251 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 848, 1115, 1685 |
| BstC8I | GCNNGC | 2 cut(s) | 1003, 1212 |
| BstDEI | CTNAG | 8 cut(s) | 478, 1095, 1244, 1284, 1325, 1636, 1829, 1834 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 495, 551 |
| BstF5I | GGATG | 1 cut(s) | 96 |
| BstFNI | CGCG | 1 cut(s) | 1741 |
| BstHHI | GCGC | 1 cut(s) | 1741 |
| BstKTI | GATC | 3 cut(s) | 154, 751, 1342 |
| BstMAI | GTCTC | 9 cut(s) | 101, 520, 547, 805, 1073, 1328, 1545, 1590, 1850 |
| BstMBI | GATC | 3 cut(s) | 151, 748, 1339 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 188, 848, 1115, 1249, 1280, 1301, 1685, 1839, 1922 |
| BstNI | CCWGG | 3 cut(s) | 101, 369, 1230 |
| BstSCI | CCNGG | 4 cut(s) | 99, 367, 667, 1228 |
| BstSLI | GKGCMC | 2 cut(s) | 1039, 1514 |
| BstUI | CGCG | 1 cut(s) | 1741 |
| BstV1I | GCAGC | 9 cut(s) | 601, 854, 1070, 1286, 1291, 1442, 1688, 1748, 1903 |
| BstV2I | GAAGAC | 1 cut(s) | 1169 |
| BsuRI | GGCC | 6 cut(s) | 182, 191, 356, 490, 597, 661 |
| BtsCI | GGATG | 1 cut(s) | 96 |
| BtsI | GCAGTG | 1 cut(s) | 1849 |
| BtsIMutI | CAGTG | 4 cut(s) | 568, 1606, 1738, 1849 |
| BveI | ACCTGC | 1 cut(s) | 946 |
| Cac8I | GCNNGC | 2 cut(s) | 1003, 1212 |
| CfoI | GCGC | 1 cut(s) | 1741 |
| Cfr13I | GGNCC | 3 cut(s) | 181, 190, 731 |
| Csp6I | GTAC | 3 cut(s) | 308, 374, 1329 |
| CviAII | CATG | 5 cut(s) | 397, 752, 964, 1520, 1904 |
| CviQI | GTAC | 3 cut(s) | 308, 374, 1329 |
| DdeI | CTNAG | 8 cut(s) | 478, 1095, 1244, 1284, 1325, 1636, 1829, 1834 |
| DpnI | GATC | 3 cut(s) | 153, 750, 1341 |
| DpnII | GATC | 3 cut(s) | 151, 748, 1339 |
| EaeI | YGGCCR | 1 cut(s) | 595 |
| Eam1104I | CTCTTC | 2 cut(s) | 99, 251 |
| EarI | CTCTTC | 2 cut(s) | 99, 251 |
| Eco130I | CCWWGG | 1 cut(s) | 1074 |
| Eco24I | GRGCYC | 1 cut(s) | 65 |
| Eco31I | GGTCTC | 1 cut(s) | 101 |
| Eco32I | GATATC | 1 cut(s) | 1486 |
| Eco47I | GGWCC | 1 cut(s) | 731 |
| Eco57I | CTGAAG | 2 cut(s) | 374, 1905 |
| Eco88I | CYCGRG | 1 cut(s) | 808 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 495, 551 |
| EcoRII | CCWGG | 3 cut(s) | 99, 367, 1228 |
| EcoRV | GATATC | 1 cut(s) | 1486 |
| EcoT14I | CCWWGG | 1 cut(s) | 1074 |
| EcoT38I | GRGCYC | 1 cut(s) | 65 |
| ErhI | CCWWGG | 1 cut(s) | 1074 |
| FaeI | CATG | 5 cut(s) | 400, 755, 967, 1523, 1907 |
| FaqI | GGGAC | 1 cut(s) | 446 |
| FatI | CATG | 5 cut(s) | 396, 751, 963, 1519, 1903 |
| FbaI | TGATCA | 1 cut(s) | 748 |
| Fnu4HI | GCNGC | 9 cut(s) | 590, 843, 1059, 1275, 1305, 1431, 1677, 1737, 1917 |
| FokI | GGATG | 1 cut(s) | 83 |
| FriOI | GRGCYC | 1 cut(s) | 65 |
| Fsp4HI | GCNGC | 9 cut(s) | 590, 843, 1059, 1275, 1305, 1431, 1677, 1737, 1917 |
| FspBI | CTAG | 6 cut(s) | 855, 909, 1299, 1580, 1682, 1824 |
| GlaI | GCGC | 1 cut(s) | 1740 |
| GluI | GCNGC | 9 cut(s) | 590, 843, 1059, 1275, 1305, 1431, 1677, 1737, 1917 |
| GsuI | CTGGAG | 1 cut(s) | 1464 |
| HaeIII | GGCC | 6 cut(s) | 182, 191, 356, 490, 597, 661 |
| HapII | CCGG | 2 cut(s) | 669, 1162 |
| HhaI | GCGC | 1 cut(s) | 1741 |
| Hin1II | CATG | 5 cut(s) | 400, 755, 967, 1523, 1907 |
| Hin6I | GCGC | 1 cut(s) | 1739 |
| HinP1I | GCGC | 1 cut(s) | 1739 |
| HincII | GTYRAC | 1 cut(s) | 1864 |
| HindII | GTYRAC | 1 cut(s) | 1864 |
| HindIII | AAGCTT | 1 cut(s) | 383 |
| HinfI | GANTC | 5 cut(s) | 521, 782, 905, 1398, 1910 |
| HpaII | CCGG | 2 cut(s) | 669, 1162 |
| HphI | GGTGA | 5 cut(s) | 40, 161, 196, 1350, 1375 |
| Hpy166II | GTNNAC | 4 cut(s) | 310, 1037, 1864, 1895 |
| Hpy188I | TCNGA | 9 cut(s) | 393, 481, 520, 727, 1146, 1287, 1397, 1704, 1837 |
| Hpy188III | TCNNGA | 7 cut(s) | 647, 810, 1162, 1299, 1481, 1660, 1928 |
| Hpy8I | GTNNAC | 4 cut(s) | 310, 1037, 1864, 1895 |
| Hpy99I | CGWCG | 1 cut(s) | 1746 |
| HpyAV | CCTTC | 4 cut(s) | 644, 1026, 1101, 1242 |
| HpyCH4III | ACNGT | 6 cut(s) | 178, 563, 1151, 1601, 1733, 1861 |
| HpyCH4IV | ACGT | 2 cut(s) | 1114, 1331 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 188, 848, 1115, 1249, 1280, 1301, 1685, 1839, 1922 |
| HpyF3I | CTNAG | 8 cut(s) | 478, 1095, 1244, 1284, 1325, 1636, 1829, 1834 |
| HpySE526I | ACGT | 2 cut(s) | 1114, 1331 |
| Hsp92II | CATG | 5 cut(s) | 400, 755, 967, 1523, 1907 |
| HspAI | GCGC | 1 cut(s) | 1739 |
| Kpn2I | TCCGGA | 1 cut(s) | 1161 |
| Ksp22I | TGATCA | 1 cut(s) | 748 |
| Kzo9I | GATC | 3 cut(s) | 151, 748, 1339 |
| LmnI | GCTCC | 5 cut(s) | 68, 221, 299, 718, 1438 |
| Lsp1109I | GCAGC | 9 cut(s) | 601, 854, 1070, 1286, 1291, 1442, 1688, 1748, 1903 |
| LweI | GCATC | 5 cut(s) | 105, 696, 860, 1304, 1675 |
| MaeI | CTAG | 6 cut(s) | 855, 909, 1299, 1580, 1682, 1824 |
| MaeII | ACGT | 2 cut(s) | 1114, 1331 |
| MaeIII | GTNAC | 1 cut(s) | 1771 |
| MalI | GATC | 3 cut(s) | 153, 750, 1341 |
| MboI | GATC | 3 cut(s) | 151, 748, 1339 |
| MboII | GAAGA | 9 cut(s) | 116, 238, 353, 380, 516, 595, 812, 1169, 1729 |
| MhlI | GDGCHC | 3 cut(s) | 65, 1039, 1514 |
| MlsI | TGGCCA | 1 cut(s) | 597 |
| MluCI | AATT | 8 cut(s) | 230, 264, 320, 883, 1448, 1515, 1664, 1847 |
| MluNI | TGGCCA | 1 cut(s) | 597 |
| MlyI | GAGTC | 3 cut(s) | 791, 1392, 1919 |
| MmeI | TCCRAC | 1 cut(s) | 1788 |
| Mox20I | TGGCCA | 1 cut(s) | 597 |
| MroI | TCCGGA | 1 cut(s) | 1161 |
| MscI | TGGCCA | 1 cut(s) | 597 |
| MseI | TTAA | 9 cut(s) | 282, 828, 881, 990, 1046, 1439, 1451, 1460, 1562 |
| Msp20I | TGGCCA | 1 cut(s) | 597 |
| MspA1I | CMGCKG | 3 cut(s) | 845, 1061, 1786 |
| MspI | CCGG | 2 cut(s) | 669, 1162 |
| MspR9I | CCNGG | 4 cut(s) | 101, 369, 669, 1230 |
| Mva1269I | GAATGC | 2 cut(s) | 529, 1245 |
| MvaI | CCWGG | 3 cut(s) | 101, 369, 1230 |
| MvnI | CGCG | 1 cut(s) | 1741 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 188, 848, 1115, 1249, 1280, 1301, 1685, 1839, 1922 |
| NciI | CCSGG | 1 cut(s) | 669 |
| NdeII | GATC | 3 cut(s) | 151, 748, 1339 |
| NlaIII | CATG | 5 cut(s) | 400, 755, 967, 1523, 1907 |
| NlaIV | GGNNCC | 5 cut(s) | 64, 223, 692, 720, 732 |
| NmuCI | GTSAC | 1 cut(s) | 1771 |
| PaeR7I | CTCGAG | 1 cut(s) | 808 |
| PctI | GAATGC | 2 cut(s) | 529, 1245 |
| PfeI | GAWTC | 2 cut(s) | 521, 905 |
| PfoI | TCCNGGA | 2 cut(s) | 99, 667 |
| PkrI | GCNGC | 9 cut(s) | 591, 844, 1060, 1276, 1306, 1432, 1678, 1738, 1918 |
| PleI | GAGTC | 3 cut(s) | 790, 1392, 1918 |
| PpsI | GAGTC | 3 cut(s) | 790, 1392, 1918 |
| Psp6I | CCWGG | 3 cut(s) | 99, 367, 1228 |
| PspGI | CCWGG | 3 cut(s) | 99, 367, 1228 |
| PspN4I | GGNNCC | 5 cut(s) | 64, 223, 692, 720, 732 |
| PspPI | GGNCC | 3 cut(s) | 181, 190, 731 |
| PvuII | CAGCTG | 3 cut(s) | 845, 1061, 1786 |
| RsaI | GTAC | 3 cut(s) | 309, 375, 1330 |
| RsaNI | GTAC | 3 cut(s) | 308, 374, 1329 |
| SaqAI | TTAA | 9 cut(s) | 282, 828, 881, 990, 1046, 1439, 1451, 1460, 1562 |
| SatI | GCNGC | 9 cut(s) | 590, 843, 1059, 1275, 1305, 1431, 1677, 1737, 1917 |
| Sau3AI | GATC | 3 cut(s) | 151, 748, 1339 |
| Sau96I | GGNCC | 3 cut(s) | 181, 190, 731 |
| ScaI | AGTACT | 1 cut(s) | 375 |
| SchI | GAGTC | 3 cut(s) | 791, 1392, 1919 |
| ScrFI | CCNGG | 4 cut(s) | 101, 369, 669, 1230 |
| SduI | GDGCHC | 3 cut(s) | 65, 1039, 1514 |
| SfaNI | GCATC | 5 cut(s) | 105, 696, 860, 1304, 1675 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 188 |
| Sfr274I | CTCGAG | 1 cut(s) | 808 |
| SinI | GGWCC | 1 cut(s) | 731 |
| SlaI | CTCGAG | 1 cut(s) | 808 |
| SmlI | CTYRAG | 1 cut(s) | 808 |
| SmoI | CTYRAG | 1 cut(s) | 808 |
| SpeI | ACTAGT | 1 cut(s) | 1823 |
| Sse9I | AATT | 8 cut(s) | 230, 264, 320, 883, 1448, 1515, 1664, 1847 |
| SspI | AATATT | 1 cut(s) | 1426 |
| SspMI | CTAG | 6 cut(s) | 855, 909, 1299, 1580, 1682, 1824 |
| StyD4I | CCNGG | 4 cut(s) | 99, 367, 667, 1228 |
| StyI | CCWWGG | 1 cut(s) | 1074 |
| TaaI | ACNGT | 6 cut(s) | 178, 563, 1151, 1601, 1733, 1861 |
| TaiI | ACGT | 2 cut(s) | 1117, 1334 |
| TaqI | TCGA | 7 cut(s) | 404, 809, 875, 1007, 1067, 1488, 1929 |
| TaqII | GACCGA | 1 cut(s) | 420 |
| TasI | AATT | 8 cut(s) | 230, 264, 320, 883, 1448, 1515, 1664, 1847 |
| TatI | WGTACW | 1 cut(s) | 373 |
| TfiI | GAWTC | 2 cut(s) | 521, 905 |
| Tru1I | TTAA | 9 cut(s) | 282, 828, 881, 990, 1046, 1439, 1451, 1460, 1562 |
| Tru9I | TTAA | 9 cut(s) | 282, 828, 881, 990, 1046, 1439, 1451, 1460, 1562 |
| TscAI | CASTG | 4 cut(s) | 568, 1606, 1738, 1849 |
| TseFI | GTSAC | 1 cut(s) | 1771 |
| TseI | GCWGC | 9 cut(s) | 589, 842, 1058, 1274, 1304, 1430, 1676, 1736, 1916 |
| Tsp45I | GTSAC | 1 cut(s) | 1771 |
| TspDTI | ATGAA | 8 cut(s) | 125, 140, 413, 1032, 1508, 1656, 1688, 1892 |
| TspGWI | ACGGA | 1 cut(s) | 1759 |
| TspRI | CASTG | 4 cut(s) | 568, 1606, 1738, 1849 |
| VneI | GTGCAC | 1 cut(s) | 1035 |
| VpaK11BI | GGWCC | 1 cut(s) | 731 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 495, 551 |
| XapI | RAATTY | 4 cut(s) | 230, 320, 883, 1664 |
| XbaI | TCTAGA | 1 cut(s) | 1298 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1028 |
| XhoI | CTCGAG | 1 cut(s) | 808 |
| XspI | CTAG | 6 cut(s) | 855, 909, 1299, 1580, 1682, 1824 |
| ZrmI | AGTACT | 1 cut(s) | 375 |