Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

73223997 .. 73225603

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG521700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCTTAAAGTGGGATTTCAGGAGGCTGTTGAGACAATCTTAAAGAGCTTGCCGAAGAAACGTCAGACCCTGATGTTCTCTGCAACAATGCCGCCTTTCATTAGAAGTCTTACTCAGAAGTACCTAAATAATCCAGCACTTATTTATCTTAAATTAGCAGATGGAATTTCCCTGTATTCTATTGCTGCGGAATCATATGGAAAATTATCAATCCTTGGACCACTTATAACAGAACATGCGAAAGGAGGGAAGTGCATTGTTTTTACTCAGAGAAAACGTGATGCACATAATTTGGCATATGCCCTGTCAAGAAGCCATAAATGTGAGGCTTTGCACGGGGATATTTCACAACAGCATAGGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCATTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCGAATGTTGATCTGGTGATACACTATGAGCTTCCAAACAATTCAGAAATATTTGTTCGTCGGTCAGGGCGAACAGGTCGTGCTGGGAAGAAAGGAAGTGCTATTCTGATTTACTCACAAAATCAGGCCAGGAACATCCAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCAACCTAGACTACCTGCATTGGTTACTTTCTGTTCATCAGCTCCCCTGGATTGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

225

Amino Acids

25.0

Weight (kDa)

9.55

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	68 - 176	9.2e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	640
AccII	CGCG	1 cut(s)	594
AciI	CCGC	2 cut(s)	92, 188
AcsI	RAATTY	1 cut(s)	165
AfaI	GTAC	2 cut(s)	122, 441
AgsI	TTSAA	1 cut(s)	590
AjnI	CCWGG	2 cut(s)	569, 663
AluBI	AGCT	3 cut(s)	48, 472, 659
AluI	AGCT	3 cut(s)	48, 472, 659
Alw26I	GTCTC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	2 cut(s)	185, 422
ApoI	RAATTY	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	172, 409
BccI	CCATC	2 cut(s)	155, 380
BciT130I	CCWGG	2 cut(s)	571, 665
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	624
BfuAI	ACCTGC	1 cut(s)	640
BisI	GCNGC	3 cut(s)	92, 186, 423
BlsI	GCNGC	3 cut(s)	93, 187, 424
Bme1390I	CCNGG	2 cut(s)	571, 665
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	571, 665
BmsI	GCATC	2 cut(s)	271, 593
BsaJI	CCNNGG	2 cut(s)	214, 663
BseBI	CCWGG	2 cut(s)	571, 665
BseDI	CCNNGG	2 cut(s)	214, 663
BseGI	GGATG	2 cut(s)	576, 608
BseMII	CTCAG	2 cut(s)	128, 281
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	172, 409
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	370
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	2 cut(s)	92, 188
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	2 cut(s)	127, 280
BspFNI	CGCG	1 cut(s)	594
BspMI	ACCTGC	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	214, 663
BssMI	GATC	1 cut(s)	451
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	2 cut(s)	571, 665
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	114, 267
BstF5I	GGATG	2 cut(s)	576, 608
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	451
BstNI	CCWGG	2 cut(s)	571, 665
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	2 cut(s)	569, 663
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	172, 409
BsuRI	GGCC	1 cut(s)	569
BtgZI	GCGATG	1 cut(s)	609
BtsCI	GGATG	2 cut(s)	576, 608
BveI	ACCTGC	1 cut(s)	640
Cac8I	GCNNGC	1 cut(s)	50
CaiI	CAGNNNCTG	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	121, 440
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	8 cut(s)	26, 48, 315, 329, 433, 472, 569, 659
CviKI_1	RGCY	8 cut(s)	26, 48, 315, 329, 433, 472, 569, 659
CviQI	GTAC	2 cut(s)	121, 440
DdeI	CTNAG	2 cut(s)	114, 267
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	569, 663
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	239
FatI	CATG	1 cut(s)	235
FauNDI	CATATG	2 cut(s)	196, 298
Fnu4HI	GCNGC	3 cut(s)	92, 186, 423
FokI	GGATG	2 cut(s)	563, 615
Fsp4HI	GCNGC	3 cut(s)	92, 186, 423
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	3 cut(s)	92, 186, 423
GsaI	CCCAGC	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	569
Hin1II	CATG	1 cut(s)	239
HinfI	GANTC	3 cut(s)	191, 586, 609
HphI	GGTGA	1 cut(s)	469
Hpy188I	TCNGA	6 cut(s)	66, 117, 270, 383, 487, 549
Hpy188III	TCNNGA	2 cut(s)	20, 309
Hpy99I	CGWCG	1 cut(s)	504
HpyCH4IV	ACGT	2 cut(s)	61, 277
HpyCH4V	TGCA	7 cut(s)	83, 255, 284, 334, 410, 606, 635
HpyF3I	CTNAG	2 cut(s)	114, 267
HpySE526I	ACGT	2 cut(s)	61, 277
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	2 cut(s)	172, 409
LweI	GCATC	2 cut(s)	271, 593
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	61, 277
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	2 cut(s)	67, 541
MhlI	GDGCHC	1 cut(s)	370
MluCI	AATT	5 cut(s)	152, 165, 203, 289, 481
MnlI	CCTC	3 cut(s)	16, 239, 319
MseI	TTAA	3 cut(s)	6, 41, 150
MslI	CAYNNNNRTG	3 cut(s)	321, 396, 581
MspR9I	CCNGG	2 cut(s)	571, 665
MvaI	CCWGG	2 cut(s)	571, 665
MvnI	CGCG	1 cut(s)	594
NdeI	CATATG	2 cut(s)	196, 298
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	239
NspI	RCATGY	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	191, 586, 609
PkrI	GCNGC	3 cut(s)	93, 187, 424
PsiI	TTATAA	1 cut(s)	227
Psp6I	CCWGG	2 cut(s)	569, 663
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	569, 663
PspPI	GGNCC	1 cut(s)	218
PstNI	CAGNNNCTG	1 cut(s)	70
RsaI	GTAC	2 cut(s)	122, 441
RsaNI	GTAC	2 cut(s)	121, 440
RseI	CAYNNNNRTG	3 cut(s)	321, 396, 581
SaqAI	TTAA	3 cut(s)	6, 41, 150
SatI	GCNGC	3 cut(s)	92, 186, 423
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	571, 665
SduI	GDGCHC	1 cut(s)	370
SfaNI	GCATC	2 cut(s)	271, 593
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	3 cut(s)	321, 396, 581
Sse9I	AATT	5 cut(s)	152, 165, 203, 289, 481
SsiI	CCGC	2 cut(s)	92, 188
SspI	AATATT	1 cut(s)	492
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	569, 663
StyI	CCWWGG	1 cut(s)	214
TaiI	ACGT	2 cut(s)	64, 280
TaqI	TCGA	1 cut(s)	396
TaqII	GACCGA	1 cut(s)	492
TasI	AATT	5 cut(s)	152, 165, 203, 289, 481
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	3 cut(s)	191, 586, 609
Tru1I	TTAA	3 cut(s)	6, 41, 150
Tru9I	TTAA	3 cut(s)	6, 41, 150
TseI	GCWGC	2 cut(s)	185, 422
TspDTI	ATGAA	2 cut(s)	88, 642
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.