Rmu_sc0001027.1_g000001

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001027.1
Physical Location & Seq
Forward (+)
1 .. 2555
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001027.1_g000001.1.cds

Sequence Viewer

Length: 1494 bp
gacaaggaattctatgaggcagcaccgagtttggatacgatttgtgtgtatggtggtacacccattggaaggcagatgggccagcttgaccatggtgttgacgtggcggttggcacacctggtcgtgttattgatctccttaagaggggtgctttgaatctatcggaagttcagtttgttgttcttgatgaagctgaccagatgcttcaagtgggatttcaggaggatgtggagataatcttggaaagattaccaaagaaacgtcagaccttgatgttctctgcaaccatgcctacatggatcaaaaatcttactaggaattacctaaaagatccagctgttatcgatcttgttggggattctgatcagaaattgccagatggaatttccctatactcgattgctgcagactcatatggaaaagcgtcaattattggaccactgataacagaacatgcaagaggaggaaagtgcattgtttttactcagacgaaacgtgatgctgatcgattggcatctgccatggcaagaaagcataattgtgaggctttgcatggggatatttcacagcaacagagagaaaggacacttgcaggttttcgagatgggcgtttcaatattttagttgccactgatgttgccgctcgtgggcttgacgtacccaatgttgatctggtgatacattacgagctcccaaataattcagaaatatttgttcatcggtcaggcagaacaggtcgtgctgggaagaaaggcagtgctattcttatttactcacaggatcaaaccaggaatgtaaggatgattgagcgagatgttggatgccgctttaaagagcttccccacattgctgttgacagcggaagtgccgacatgttcgacataggaagtggtggtcgatttaatcgttttggtggtccagggggagggggacctggatttggccgttctggacctagcagtagatatagtggacctaattcaggtcgttttggttcctttggtgattctggtcaatctagcacaagtcgaggtggaaactttggcaattcaggtttcggtcgctcaagtggttttgggagttccgaccgttcaagtggttttggaagttttgatcgttcaggtggtttcggaagttccgatcgttcaagcggtttaggaagttctggccgttcaagcggttttggaggttctgaccgttcaggtggttttggaggagggtttggtagttccgaccgatcaggtggttttggaggatttggcggttctgatcgttctagtggattcagagatcgttccggtggttctaggaactatggtttagatcgccagagtggatttgatgtggaagctctggccgttcaaacggttttggaggttctgaccgttcaggtggttttggaggagggtttggtagttccgaccgatcaggtggttctgatcgttctagtggattcagagatcgttccggtggttctaggaactatggtttag

Protein Analysis

497

Amino Acids

52.57

Weight (kDa)

6.23

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 584
AccBSI CCGCTC 1 cut(s) 644
AciI CCGC 7 cut(s) 107, 642, 826, 861, 1152, 1179, 1263
AclWI GGATC 3 cut(s) 308, 326, 789
AcoI YGGCCR 3 cut(s) 943, 1168, 1356
AcsI RAATTY 2 cut(s) 8, 384
AfaI GTAC 2 cut(s) 58, 660
AfiI CCNNNNNNNGG 6 cut(s) 69, 145, 648, 926, 941, 983
AflII CTTAAG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 873
AgsI TTSAA 7 cut(s) 157, 209, 616, 1095, 1149, 1176, 1364
AjiI CACGTC 1 cut(s) 103
AjnI CCWGG 4 cut(s) 118, 788, 919, 934
AluBI AGCT 6 cut(s) 85, 194, 338, 691, 838, 1352
AluI AGCT 6 cut(s) 85, 194, 338, 691, 838, 1352
Alw21I GWGCWC 1 cut(s) 693
AlwI GGATC 3 cut(s) 308, 326, 789
AoxI GGCC 4 cut(s) 79, 943, 1168, 1356
ApeKI GCWGC 2 cut(s) 20, 404
ApoI RAATTY 2 cut(s) 8, 384
AspS9I GGNCC 6 cut(s) 79, 437, 917, 932, 953, 974
AsuHPI GGTGA 2 cut(s) 688, 1016
AvaII GGWCC 5 cut(s) 437, 917, 932, 953, 974
BanII GRGCYC 1 cut(s) 693
BauI CACGAG 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 2 cut(s) 32, 391
BccI CCATC 3 cut(s) 70, 374, 599
BceAI ACGGC 3 cut(s) 930, 1155, 1343
BciT130I CCWGG 4 cut(s) 120, 790, 921, 936
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 1 cut(s) 364
BfaI CTAG 7 cut(s) 315, 957, 1020, 1278, 1308, 1448, 1478
BfmI CTRYAG 1 cut(s) 405
BfrI CTTAAG 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 584
BfuI GTATCC 1 cut(s) 28
BisI GCNGC 4 cut(s) 21, 405, 642, 826
BlsI GCNGC 4 cut(s) 22, 406, 643, 827
Bme1390I CCNGG 4 cut(s) 120, 790, 921, 936
Bme18I GGWCC 5 cut(s) 437, 917, 932, 953, 974
BmgBI CACGTC 1 cut(s) 103
BmgT120I GGNCC 6 cut(s) 79, 437, 917, 932, 953, 974
BmiI GGNNCC 2 cut(s) 933, 997
BmrFI CCNGG 4 cut(s) 120, 790, 921, 936
BmsI GCATC 4 cut(s) 192, 490, 524, 812
BpuEI CTTGAG 1 cut(s) 1051
Bsa29I ATCGAT 2 cut(s) 345, 508
BsaBI GATNNNNATC 3 cut(s) 363, 504, 514
BsaJI CCNNGG 3 cut(s) 91, 522, 920
BsaWI WCCGGW 2 cut(s) 1298, 1468
Bsc4I CCNNNNNNNGG 6 cut(s) 69, 145, 648, 926, 941, 983
Bse3DI GCAATG 1 cut(s) 846
Bse8I GATNNNNATC 3 cut(s) 363, 504, 514
BseBI CCWGG 4 cut(s) 120, 790, 921, 936
BseCI ATCGAT 2 cut(s) 345, 508
BseDI CCNNGG 3 cut(s) 91, 522, 920
BseGI GGATG 3 cut(s) 232, 807, 827
BseJI GATNNNNATC 3 cut(s) 363, 504, 514
BseLI CCNNNNNNNGG 6 cut(s) 69, 145, 648, 926, 941, 983
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 1 cut(s) 500
BseRI GAGGAG 3 cut(s) 477, 1230, 1418
BseXI GCAGC 2 cut(s) 32, 391
BseYI CCCAGC 1 cut(s) 743
Bsh1285I CGRYCG 5 cut(s) 1063, 1090, 1144, 1237, 1425
BshFI GGCC 4 cut(s) 81, 945, 1170, 1358
BshVI ATCGAT 2 cut(s) 345, 508
BsiEI CGRYCG 5 cut(s) 1063, 1090, 1144, 1237, 1425
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 2 cut(s) 1299, 1469
BslFI GGGAC 1 cut(s) 945
BslI CCNNNNNNNGG 6 cut(s) 69, 145, 648, 926, 941, 983
BsmFI GGGAC 1 cut(s) 945
BsnI GGCC 4 cut(s) 81, 945, 1170, 1358
Bsp1286I GDGCHC 1 cut(s) 693
Bsp19I CCATGG 2 cut(s) 91, 522
BspACI CCGC 7 cut(s) 107, 642, 826, 861, 1152, 1179, 1263
BspANI GGCC 4 cut(s) 81, 945, 1170, 1358
BspCNI CTCAG 1 cut(s) 499
BspDI ATCGAT 2 cut(s) 345, 508
BspLI GGNNCC 2 cut(s) 933, 997
BspMAI CTGCAG 1 cut(s) 409
BspMI ACCTGC 1 cut(s) 584
BspPI GGATC 3 cut(s) 308, 326, 789
BspTI CTTAAG 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 846
BssECI CCNNGG 3 cut(s) 91, 522, 920
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 2 cut(s) 91, 522
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 4 cut(s) 120, 790, 921, 936
Bst4CI ACNGT 4 cut(s) 1091, 1199, 1369, 1387
BstAFI CTTAAG 1 cut(s) 140
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 2 cut(s) 91, 522
BstENI CCTNNNNNAGG 1 cut(s) 981
BstF5I GGATG 3 cut(s) 232, 807, 827
BstMCI CGRYCG 5 cut(s) 1063, 1090, 1144, 1237, 1425
BstMWI GCNNNNNNNGC 1 cut(s) 1176
BstNI CCWGG 4 cut(s) 120, 790, 921, 936
BstNSI RCATGY 2 cut(s) 458, 877
BstSCI CCNGG 4 cut(s) 118, 788, 919, 934
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 2 cut(s) 32, 391
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
Bsu15I ATCGAT 2 cut(s) 345, 508
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 4 cut(s) 81, 945, 1170, 1358
BsuTUI ATCGAT 2 cut(s) 345, 508
BtgI CCRYGG 2 cut(s) 91, 522
BtrI CACGTC 1 cut(s) 103
BtsCI GGATG 3 cut(s) 232, 807, 827
BtsI GCAGTG 1 cut(s) 763
BtsIMutI CAGTG 3 cut(s) 440, 630, 763
BveI ACCTGC 1 cut(s) 584
Cac8I GCNNGC 1 cut(s) 83
Cfr13I GGNCC 6 cut(s) 79, 437, 917, 932, 953, 974
ClaI ATCGAT 2 cut(s) 345, 508
CseI GACGC 1 cut(s) 414
CsiI ACCWGGT 1 cut(s) 118
Csp6I GTAC 2 cut(s) 57, 659
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CviAII CATG 7 cut(s) 92, 289, 297, 455, 523, 554, 874
CviQI GTAC 2 cut(s) 57, 659
DdeI CTNAG 1 cut(s) 486
DraI TTTAAA 1 cut(s) 832
EaeI YGGCCR 3 cut(s) 943, 1168, 1356
Ecl136II GAGCTC 1 cut(s) 691
Eco130I CCWWGG 2 cut(s) 91, 522
Eco24I GRGCYC 1 cut(s) 693
Eco47I GGWCC 5 cut(s) 437, 917, 932, 953, 974
Eco53kI GAGCTC 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 981
EcoO109I RGGNCCY 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 8
EcoRII CCWGG 4 cut(s) 118, 788, 919, 934
EcoT14I CCWWGG 2 cut(s) 91, 522
EcoT38I GRGCYC 1 cut(s) 693
ErhI CCWWGG 2 cut(s) 91, 522
FaeI CATG 7 cut(s) 95, 292, 300, 458, 526, 557, 877
FaqI GGGAC 1 cut(s) 945
FatI CATG 7 cut(s) 91, 288, 296, 454, 522, 553, 873
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 364
Fnu4HI GCNGC 4 cut(s) 21, 405, 642, 826
FokI GGATG 3 cut(s) 239, 814, 834
FriOI GRGCYC 1 cut(s) 693
Fsp4HI GCNGC 4 cut(s) 21, 405, 642, 826
FspBI CTAG 7 cut(s) 315, 957, 1020, 1278, 1308, 1448, 1478
GluI GCNGC 4 cut(s) 21, 405, 642, 826
GsaI CCCAGC 1 cut(s) 747
HaeIII GGCC 4 cut(s) 81, 945, 1170, 1358
HapII CCGG 2 cut(s) 1299, 1469
HgaI GACGC 1 cut(s) 414
Hin1II CATG 7 cut(s) 95, 292, 300, 458, 526, 557, 877
HincII GTYRAC 2 cut(s) 100, 856
HindII GTYRAC 2 cut(s) 100, 856
HinfI GANTC 6 cut(s) 157, 359, 410, 1007, 1284, 1454
HpaII CCGG 2 cut(s) 1299, 1469
HphI GGTGA 2 cut(s) 688, 1016
Hpy166II GTNNAC 4 cut(s) 59, 100, 856, 974
Hpy188III TCNNGA 4 cut(s) 185, 221, 602, 951
Hpy8I GTNNAC 4 cut(s) 59, 100, 856, 974
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 4 cut(s) 1091, 1199, 1369, 1387
HpyCH4IV ACGT 4 cut(s) 102, 262, 496, 657
HpyCH4V TGCA 6 cut(s) 284, 407, 458, 474, 553, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 1176
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 4 cut(s) 102, 262, 496, 657
Hsp92II CATG 7 cut(s) 95, 292, 300, 458, 526, 557, 877
Ksp22I TGATCA 1 cut(s) 364
LmnI GCTCC 1 cut(s) 696
Lsp1109I GCAGC 2 cut(s) 32, 391
LweI GCATC 4 cut(s) 192, 490, 524, 812
MabI ACCWGGT 1 cut(s) 118
MaeI CTAG 7 cut(s) 315, 957, 1020, 1278, 1308, 1448, 1478
MaeII ACGT 4 cut(s) 102, 262, 496, 657
MbiI CCGCTC 1 cut(s) 644
MboII GAAGA 1 cut(s) 760
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 9 cut(s) 8, 319, 371, 384, 429, 538, 700, 979, 1048
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 4 cut(s) 799, 1110, 1257, 1445
MseI TTAA 3 cut(s) 141, 831, 903
MslI CAYNNNNRTG 1 cut(s) 540
MspA1I CMGCKG 2 cut(s) 338, 861
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 2 cut(s) 1299, 1469
MspR9I CCNGG 4 cut(s) 120, 790, 921, 936
MvaI CCWGG 4 cut(s) 120, 790, 921, 936
MwoI GCNNNNNNNGC 1 cut(s) 1176
NcoI CCATGG 2 cut(s) 91, 522
NdeI CATATG 1 cut(s) 415
NlaIII CATG 7 cut(s) 95, 292, 300, 458, 526, 557, 877
NlaIV GGNNCC 2 cut(s) 933, 997
NspI RCATGY 2 cut(s) 458, 877
PciI ACATGT 1 cut(s) 873
PcsI WCGNNNNNNNCGW 3 cut(s) 607, 904, 1137
PfeI GAWTC 5 cut(s) 157, 359, 1007, 1284, 1454
PkrI GCNGC 4 cut(s) 22, 406, 643, 827
Ple19I CGATCG 1 cut(s) 1144
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PpuMI RGGWCCY 1 cut(s) 932
PscI ACATGT 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 932
Psp6I CCWGG 4 cut(s) 118, 788, 919, 934
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 4 cut(s) 118, 788, 919, 934
PspN4I GGNNCC 2 cut(s) 933, 997
PspPI GGNCC 6 cut(s) 79, 437, 917, 932, 953, 974
PspPPI RGGWCCY 1 cut(s) 932
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 1 cut(s) 331
PvuI CGATCG 1 cut(s) 1144
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 58, 660
RsaNI GTAC 2 cut(s) 57, 659
RseI CAYNNNNRTG 1 cut(s) 540
SacI GAGCTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 141, 831, 903
SatI GCNGC 4 cut(s) 21, 405, 642, 826
Sau96I GGNCC 6 cut(s) 79, 437, 917, 932, 953, 974
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 4 cut(s) 120, 790, 921, 936
SduI GDGCHC 1 cut(s) 693
SexAI ACCWGGT 1 cut(s) 118
SfaNI GCATC 4 cut(s) 192, 490, 524, 812
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 5 cut(s) 437, 917, 932, 953, 974
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 2 cut(s) 140, 1066
SmoI CTYRAG 2 cut(s) 140, 1066
Sse9I AATT 9 cut(s) 8, 319, 371, 384, 429, 538, 700, 979, 1048
SsiI CCGC 7 cut(s) 107, 642, 826, 861, 1152, 1179, 1263
SspI AATATT 2 cut(s) 619, 711
SspMI CTAG 7 cut(s) 315, 957, 1020, 1278, 1308, 1448, 1478
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 4 cut(s) 118, 788, 919, 934
StyI CCWWGG 2 cut(s) 91, 522
TaaI ACNGT 4 cut(s) 1091, 1199, 1369, 1387
TaiI ACGT 4 cut(s) 105, 265, 499, 660
TaqI TCGA 7 cut(s) 345, 398, 508, 601, 879, 898, 1030
TaqII GACCGA 4 cut(s) 711, 1049, 1251, 1439
TasI AATT 9 cut(s) 8, 319, 371, 384, 429, 538, 700, 979, 1048
TauI GCSGC 2 cut(s) 644, 828
TfiI GAWTC 5 cut(s) 157, 359, 1007, 1284, 1454
Tru1I TTAA 3 cut(s) 141, 831, 903
Tru9I TTAA 3 cut(s) 141, 831, 903
TscAI CASTG 3 cut(s) 447, 637, 763
TseI GCWGC 2 cut(s) 20, 404
TspDTI ATGAA 2 cut(s) 204, 707
TspRI CASTG 3 cut(s) 447, 637, 763
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 5 cut(s) 437, 917, 932, 953, 974
XagI CCTNNNNNAGG 1 cut(s) 981
XapI RAATTY 2 cut(s) 8, 384
XceI RCATGY 2 cut(s) 458, 877
XcmI CCANNNNNNNNNTGG 2 cut(s) 89, 670
XspI CTAG 7 cut(s) 315, 957, 1020, 1278, 1308, 1448, 1478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.