Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000968

Physical Location & Seq

Genomic Coordinates Reverse (-)

66678532 .. 66681582

Gene Structure 3051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG496300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTTCTCTGCAACAATGCCGCCTTTCATTAGAAGTCTTACTCAGAAGTACCTAAATAATCCAGCAGTTATTGATCTTGTTGGGGACAATGATCAGAAATTAGCAGACGGAATTTCCCTGTATTCTATTGTTGCGGAATCATATGGAAAAGCATCGATCCTTGGACCACTTATAACAGACCATGCAAATGGAGGGAAGTGCATTGTTTTTACTCAGAGAAAACGTGATGCACATAATTTGGCATATGCCCTGTCAAGAAGCCATAAATGTGAGGCTTTGCACGGGGATATTTCACAACAGCAGACGGAAAGGGCACTTTCAGGTTTCCGAGATGGGCGTTTCGATGTTTTAGTTGCAACAGATGTTGCTGCTCGTGGGCTTGATGTACCCAATGTTGATCTGGTGATACACTATGAGCTTCCAAACAATTCAGAAATATTTGTTCATCGGTCAGGGCGAACAGGTCGTGCTGGGAGGAAAGGAAGTGCTATTCTGATTTACTCACAAGATCAGGCCAGGAACGTCAAAATGATTCAACGCGATGTAGGATGCAGATTCACAGAGCTCCCCCGGATTGCTGTTGATAGCAGCAGTGCAAGCATGTTCTCTGACAGAGGTAGTAGCGGTGGTTGTTTTGATGGTTCCAGGGGGATCTGGATATGGTCGTCCAGCAAACCGAGGTGGAAGCTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010467 GO:0010501 GO:0016032 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0018995 GO:0019034 GO:0019058 GO:0019079 GO:0030312 GO:0031974 GO:0031981 GO:0033643 GO:0033646 GO:0033647 GO:0033648 GO:0034641 GO:0039694 GO:0042025 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043656 GO:0043657 GO:0044094 GO:0044215 GO:0044216 GO:0044217 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko01110 map01110

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

231

Amino Acids

25.48

Weight (kDa)

9.25

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	50 - 158	8.7e-32	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22310 AT3G22310 AT3G22330
fragaria_vesca	FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140 FvH4_6g40140
malus_domestica	MD09G1134900.v1.1 MD17G1123900.v1.1
prunus_persica	Prupe.3G191800_v2.0.a1 Prupe.3G191800_v2.0.a1
pyrus_communis	pycom09g05600 pycom17g11530
rosa_chinensis	RchiOBHm_Chr2g0154771 RchiOBHm_Chr2g0154851 RchiOBHm_Chr2g0155131
rosa_laevigata	RLG00000020802 RLG00000020805 RLG00000020809 RLG00000020814 RLG00000020820
rosa_multiflora	Rmu_sc0001027.1_g000001 Rmu_sc0002048.1_g000007 Rmu_sc0002048.1_g000019 Rmu_sc0002048.1_g000035 Rmu_sc0004976.1_g000007
rosa_roxburghii	Rroxscaffold_2G00093940 Rroxscaffold_2G00094090
rosa_rugosa	Rorug02G0444900.1 Rorug02G0445000 Rorug02G0445500 Rorug02G0445600
rosa_samantha	Rh2AG510600 Rh2AG511000 Rh2AG511200 Rh2AG511700 Rh2BG521500 Rh2BG521700 Rh2BG522200 Rh2BG522500 Rh2CG495800 Rh2CG496100 Rh2CG496300 Rh2CG496700 Rh2DG531600 Rh2DG531900 Rh2DG532200
rosa_wichuraiana	Rw2G042000 Rw2G042030 Rw2G042040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AccII	CGCG	1 cut(s)	540
AciI	CCGC	3 cut(s)	20, 134, 624
AclWI	GGATC	2 cut(s)	151, 659
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	2 cut(s)	50, 387
AgsI	TTSAA	1 cut(s)	536
AjnI	CCWGG	2 cut(s)	515, 644
AluBI	AGCT	3 cut(s)	418, 565, 688
AluI	AGCT	3 cut(s)	418, 565, 688
Alw21I	GWGCWC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	151, 659
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	2 cut(s)	368, 588
ApoI	RAATTY	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	1 cut(s)	571
AsuHPI	GGTGA	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	567
BbvI	GCAGC	2 cut(s)	355, 600
BccI	CCATC	2 cut(s)	326, 632
BciT130I	CCWGG	2 cut(s)	517, 646
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	571
BisI	GCNGC	3 cut(s)	20, 369, 589
BlsI	GCNGC	3 cut(s)	21, 370, 590
Bme1390I	CCNGG	3 cut(s)	517, 571, 646
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	3 cut(s)	517, 571, 646
BmsI	GCATC	3 cut(s)	161, 217, 539
BpuMI	CCSGG	1 cut(s)	571
Bsa29I	ATCGAT	1 cut(s)	155
BsaJI	CCNNGG	4 cut(s)	160, 569, 645, 677
BseBI	CCWGG	2 cut(s)	517, 646
BseCI	ATCGAT	1 cut(s)	155
BseDI	CCNNGG	4 cut(s)	160, 569, 645, 677
BseGI	GGATG	1 cut(s)	554
BseMII	CTCAG	2 cut(s)	56, 227
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	355, 600
BseYI	CCCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	540
BshFI	GGCC	1 cut(s)	515
BshVI	ATCGAT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	316, 567
Bsp143I	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
BspACI	CCGC	3 cut(s)	20, 134, 624
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	2 cut(s)	55, 226
BspDI	ATCGAT	1 cut(s)	155
BspFNI	CGCG	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	643
BspPI	GGATC	2 cut(s)	151, 659
BssECI	CCNNGG	4 cut(s)	160, 569, 645, 677
BssMI	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
BssSI	CACGAG	1 cut(s)	372
BssT1I	CCWWGG	1 cut(s)	160
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	517, 646
BstC8I	GCNNGC	1 cut(s)	598
BstDEI	CTNAG	2 cut(s)	42, 213
BstF5I	GGATG	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	540
BstKTI	GATC	6 cut(s)	76, 94, 159, 400, 511, 654
BstMBI	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
BstMWI	GCNNNNNNNGC	1 cut(s)	597
BstNI	CCWGG	2 cut(s)	517, 646
BstNSI	RCATGY	1 cut(s)	604
BstSCI	CCNGG	3 cut(s)	515, 569, 644
BstSLI	GKGCMC	1 cut(s)	316
BstUI	CGCG	1 cut(s)	540
BstV1I	GCAGC	2 cut(s)	355, 600
BstX2I	RGATCY	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	651
Bsu15I	ATCGAT	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	515
BsuTUI	ATCGAT	1 cut(s)	155
BtgZI	GCGATG	1 cut(s)	555
BtsCI	GGATG	1 cut(s)	554
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	598
Cac8I	GCNNGC	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	164
ClaI	ATCGAT	1 cut(s)	155
Csp6I	GTAC	2 cut(s)	49, 386
CviAII	CATG	2 cut(s)	182, 601
CviJI	RGCY	7 cut(s)	261, 275, 379, 418, 515, 565, 688
CviKI_1	RGCY	7 cut(s)	261, 275, 379, 418, 515, 565, 688
CviQI	GTAC	2 cut(s)	49, 386
DdeI	CTNAG	2 cut(s)	42, 213
DpnI	GATC	6 cut(s)	75, 93, 158, 399, 510, 653
DpnII	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
Ecl136II	GAGCTC	1 cut(s)	565
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	565
EcoICRI	GAGCTC	1 cut(s)	565
EcoRII	CCWGG	2 cut(s)	515, 644
EcoT14I	CCWWGG	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	2 cut(s)	185, 604
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	2 cut(s)	181, 600
FauNDI	CATATG	2 cut(s)	142, 244
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	20, 369, 589
FokI	GGATG	1 cut(s)	561
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	3 cut(s)	20, 369, 589
GluI	GCNGC	3 cut(s)	20, 369, 589
GsaI	CCCAGC	1 cut(s)	474
HaeIII	GGCC	1 cut(s)	515
HapII	CCGG	1 cut(s)	571
Hin1II	CATG	2 cut(s)	185, 604
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	3 cut(s)	137, 532, 555
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	1 cut(s)	415
Hpy188I	TCNGA	7 cut(s)	45, 96, 216, 329, 433, 495, 610
Hpy188III	TCNNGA	2 cut(s)	255, 655
HpyCH4IV	ACGT	2 cut(s)	223, 522
HpyCH4V	TGCA	8 cut(s)	11, 185, 201, 230, 280, 356, 552, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	597
HpyF3I	CTNAG	2 cut(s)	42, 213
HpySE526I	ACGT	2 cut(s)	223, 522
Hsp92II	CATG	2 cut(s)	185, 604
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
LmnI	GCTCC	1 cut(s)	570
Lsp1109I	GCAGC	2 cut(s)	355, 600
LweI	GCATC	3 cut(s)	161, 217, 539
MaeII	ACGT	2 cut(s)	223, 522
MalI	GATC	6 cut(s)	75, 93, 158, 399, 510, 653
MboI	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	2 cut(s)	316, 567
MluCI	AATT	4 cut(s)	98, 111, 235, 427
MnlI	CCTC	5 cut(s)	185, 265, 468, 608, 672
MslI	CAYNNNNRTG	2 cut(s)	186, 267
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	3 cut(s)	517, 571, 646
MvaI	CCWGG	2 cut(s)	517, 646
MvnI	CGCG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	597
NciI	CCSGG	1 cut(s)	571
NdeI	CATATG	2 cut(s)	142, 244
NdeII	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
NlaIII	CATG	2 cut(s)	185, 604
NlaIV	GGNNCC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PfeI	GAWTC	3 cut(s)	137, 532, 555
PkrI	GCNGC	3 cut(s)	21, 370, 590
PsiI	TTATAA	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	567
Psp6I	CCWGG	2 cut(s)	515, 644
PspFI	CCCAGC	1 cut(s)	470
PspGI	CCWGG	2 cut(s)	515, 644
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	2 cut(s)	50, 387
RsaNI	GTAC	2 cut(s)	49, 386
RseI	CAYNNNNRTG	2 cut(s)	186, 267
SacI	GAGCTC	1 cut(s)	567
SatI	GCNGC	3 cut(s)	20, 369, 589
Sau3AI	GATC	6 cut(s)	73, 91, 156, 397, 508, 651
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	517, 571, 646
SduI	GDGCHC	2 cut(s)	316, 567
SfaNI	GCATC	3 cut(s)	161, 217, 539
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	186, 267
Sse9I	AATT	4 cut(s)	98, 111, 235, 427
SsiI	CCGC	3 cut(s)	20, 134, 624
SspI	AATATT	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	567
StyD4I	CCNGG	3 cut(s)	515, 569, 644
StyI	CCWWGG	1 cut(s)	160
TaiI	ACGT	2 cut(s)	226, 525
TaqI	TCGA	2 cut(s)	155, 342
TaqII	GACCGA	1 cut(s)	438
TasI	AATT	4 cut(s)	98, 111, 235, 427
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	3 cut(s)	137, 532, 555
TscAI	CASTG	1 cut(s)	598
TseI	GCWGC	2 cut(s)	368, 588
TspDTI	ATGAA	2 cut(s)	16, 434
TspGWI	ACGGA	2 cut(s)	123, 320
TspRI	CASTG	1 cut(s)	598
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.