Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002547

Physical Location & Seq

Genomic Coordinates Forward (+)

16711873 .. 16714576

Gene Structure 2704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAAGATTGACAGTAGTACTATTCTTTCTTGCCCTAGTTTTCTCAACATCTCAAGCTTATGAGCCACGTATAAACCACCATATCCATCTCCTCAGGCCGAAATCCGGGGCAGGTGGCGGCAGCGTTCCTGGCGTGTCTTGCCTGAGTTGGCGTTTGGGGGTGGAAACTAGGAACATTATCAACTGGAAGACTGTTCCGGCAGAATGTGAAAGCTACGTTGGTCACTACATGCTTGGGCACCAGTACAGGAAAGACTCAAAAGTGGTCACTGATGAGGCTTGGCTCCATGCTCAGAGCCTCAATCTTACAAAGGATGGCAAGAACGTTTGGGTCTTTGATATAGACGAAACTACACTCTCTAATCTACCGTATTATGCTCGTCATGGATTCGGGACGGAGGTATACAATGCTACTGCATTCAATGAATGGGTGTTCGAAGGCACAGCCCCAGCTTTGCCCGAGAGTCTTAAGCTGTACAAGAAGTTGTTGAGACTTGGAGTCAAGGTTGTGTTCATAACAGGAAGAGGAGAAGATCTAAGAAGTGTCACGACCACCAATCTCAAAAATGCCGGATATCATACTTGGAAGAAGCTTGTTCTAAAGGGATCAAATTATTCTGGGAAGACATCTTACGTGTATAAAACAGCAGAGAGGGAGAAGCTTGAGAAAAATGGATTTAGAATAATTGGGAACATGGGCGATCAATGGAGCGATATTTTGGGTACAACTGTCGGCAATCGGACCTTCAAGTTGCCTGATCCACTTTATTACGTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002213 GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006979 GO:0008134 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009625 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0022626 GO:0032991 GO:0042221 GO:0042578 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046688 GO:0050896 GO:0051704 GO:0051707 GO:1901700 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Acid_phosphat_B

Protein Analysis

261

Amino Acids

29.4

Weight (kDa)

9.31

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_phosphat_B	PF03767	44 - 259	1.4e-85	HAD superfamily, subfamily IIIB (Acid phosphatase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32551 FvH4_6g32560 FvH4_6g32560 FvH4_6g32570 FvH4_6g32570 FvH4_6g32570
malus_domestica	MD09G1200500.v1.1 MD09G1200900.v1.1 MD09G1201200.v1.1
prunus_persica	Prupe.3G057000_v2.0.a1 Prupe.3G057100_v2.0.a1
pyrus_communis	pycom09g11800 pycom17g19090
rosa_chinensis	RchiOBHm_Chr2g0140951 RchiOBHm_Chr2g0140961 RchiOBHm_Chr2g0140991 RchiOBHm_Chr2g0141021
rosa_laevigata	RLG00000019903 RLG00000019906 RLG00000019907 RLG00000019908
rosa_multiflora	Rmu_sc0003848.1_g000018 Rmu_sc0004769.1_g000010 Rmu_sc0004769.1_g000014
rosa_roxburghii	Rroxscaffold_2G00104300 Rroxscaffold_2G00104330 Rroxscaffold_2G00104340
rosa_rugosa	Rorug02G0365900 Rorug02G0366000 Rorug02G0366200
rosa_samantha	Rh2AG417300 Rh2AG417500 Rh2BG427400 Rh2CG403600 Rh2CG403800 Rh2DG436700 Rh2DG436900
rosa_wichuraiana	Rw2G034140 Rw2G034150 Rw2G034160 Rw2G034170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc36I	ACCTGC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	1 cut(s)	120
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	2 cut(s)	616, 755
AfaI	GTAC	4 cut(s)	21, 248, 479, 727
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflII	CTTAAG	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	2 cut(s)	424, 751
AhdI	GACNNNNNGTC	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	6 cut(s)	59, 216, 455, 475, 595, 664
AluI	AGCT	6 cut(s)	59, 216, 455, 475, 595, 664
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	616, 755
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	744
AsuC2I	CCSGG	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	438
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	744
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	1 cut(s)	243
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BanI	GGYRCC	1 cut(s)	240
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BbsI	GAAGAC	2 cut(s)	197, 632
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	96, 311
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	38, 171
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	121, 124
BlsI	GCNGC	2 cut(s)	122, 125
BmcAI	AGTACT	1 cut(s)	21
Bme1390I	CCNGG	2 cut(s)	109, 132
Bme18I	GGWCC	1 cut(s)	744
BmeRI	GACNNNNNGTC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	744
BmiI	GGNNCC	2 cut(s)	242, 287
BmrFI	CCNGG	2 cut(s)	109, 132
BpiI	GAAGAC	2 cut(s)	197, 632
Bpu14I	TTCGAA	1 cut(s)	438
BpuEI	CTTGAG	2 cut(s)	39, 686
BpuMI	CCSGG	1 cut(s)	109
BsaAI	YACGTR	2 cut(s)	71, 637
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	191, 244
Bse21I	CCTNAGG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	3 cut(s)	109, 137, 308
BseNI	ACTGG	2 cut(s)	191, 244
BseRI	GAGGAG	2 cut(s)	83, 543
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	3 cut(s)	108, 200, 573
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	461
Bsp119I	TTCGAA	1 cut(s)	438
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	535, 608, 703, 760
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	3 cut(s)	108, 138, 307
BspLI	GGNNCC	2 cut(s)	242, 287
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	2 cut(s)	616, 755
BspT104I	TTCGAA	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	470
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	191, 244
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	4 cut(s)	535, 608, 703, 760
BssNAI	GTATAC	1 cut(s)	406
Bst1107I	GTATAC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	16, 196, 372, 733
Bst6I	CTCTTC	1 cut(s)	520
BstAFI	CTTAAG	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	477
BstBAI	YACGTR	2 cut(s)	71, 637
BstBI	TTCGAA	1 cut(s)	438
BstDEI	CTNAG	4 cut(s)	95, 146, 294, 539
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	4 cut(s)	538, 611, 706, 763
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	4 cut(s)	535, 608, 703, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 141
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	2 cut(s)	107, 130
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	2 cut(s)	197, 632
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	1 cut(s)	406
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	322
BtsIMutI	CAGTG	1 cut(s)	270
BveI	ACCTGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	744
Csp6I	GTAC	4 cut(s)	20, 247, 478, 726
CviAII	CATG	4 cut(s)	232, 290, 386, 697
CviQI	GTAC	4 cut(s)	20, 247, 478, 726
DdeI	CTNAG	4 cut(s)	95, 146, 294, 539
DpnI	GATC	4 cut(s)	537, 610, 705, 762
DpnII	GATC	4 cut(s)	535, 608, 703, 760
DriI	GACNNNNNGTC	1 cut(s)	500
Eam1104I	CTCTTC	1 cut(s)	520
Eam1105I	GACNNNNNGTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	520
Eco32I	GATATC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	744
Eco81I	CCTNAGG	1 cut(s)	95
Eco88I	CYCGRG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	578
FaeI	CATG	4 cut(s)	235, 293, 389, 700
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	4 cut(s)	231, 289, 385, 696
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	2 cut(s)	121, 124
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	121, 124
FspBI	CTAG	2 cut(s)	38, 171
GluI	GCNGC	2 cut(s)	121, 124
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	3 cut(s)	108, 200, 573
Hin1II	CATG	4 cut(s)	235, 293, 389, 700
HindIII	AAGCTT	3 cut(s)	57, 593, 662
HinfI	GANTC	4 cut(s)	257, 390, 466, 501
HpaII	CCGG	3 cut(s)	108, 200, 573
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	297, 744
Hpy188III	TCNNGA	2 cut(s)	394, 550
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	2 cut(s)	434, 757
HpyCH4III	ACNGT	4 cut(s)	16, 196, 372, 733
HpyCH4IV	ACGT	5 cut(s)	70, 219, 327, 636, 774
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 141
HpyF3I	CTNAG	4 cut(s)	95, 146, 294, 539
HpySE526I	ACGT	5 cut(s)	70, 219, 327, 636, 774
Hsp92II	CATG	4 cut(s)	235, 293, 389, 700
Kzo9I	GATC	4 cut(s)	535, 608, 703, 760
LmnI	GCTCC	2 cut(s)	291, 711
Lsp1109I	GCAGC	1 cut(s)	135
MaeI	CTAG	2 cut(s)	38, 171
MaeII	ACGT	5 cut(s)	70, 219, 327, 636, 774
MaeIII	GTNAC	3 cut(s)	224, 268, 547
MalI	GATC	4 cut(s)	537, 610, 705, 762
MboI	GATC	4 cut(s)	535, 608, 703, 760
MboII	GAAGA	5 cut(s)	202, 537, 545, 601, 637
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	243
MluCI	AATT	2 cut(s)	613, 687
MlyI	GAGTC	3 cut(s)	251, 475, 510
MnlI	CCTC	6 cut(s)	104, 271, 311, 394, 521, 648
MseI	TTAA	2 cut(s)	471, 781
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	3 cut(s)	108, 200, 573
MspR9I	CCNGG	2 cut(s)	109, 132
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	132, 141
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	535, 608, 703, 760
NlaIII	CATG	4 cut(s)	235, 293, 389, 700
NlaIV	GGNNCC	2 cut(s)	242, 287
NmuCI	GTSAC	3 cut(s)	224, 268, 547
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	438
PaqCI	CACCTGC	1 cut(s)	104
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	2 cut(s)	122, 125
PleI	GAGTC	3 cut(s)	251, 474, 509
PpsI	GAGTC	3 cut(s)	251, 474, 509
Ppu21I	YACGTR	2 cut(s)	71, 637
Psp1406I	AACGTT	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	242, 287
PspPI	GGNCC	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	4 cut(s)	21, 248, 479, 727
RsaNI	GTAC	4 cut(s)	20, 247, 478, 726
SaqAI	TTAA	2 cut(s)	471, 781
SatI	GCNGC	2 cut(s)	121, 124
Sau3AI	GATC	4 cut(s)	535, 608, 703, 760
Sau96I	GGNCC	1 cut(s)	744
ScaI	AGTACT	1 cut(s)	21
SchI	GAGTC	3 cut(s)	251, 475, 510
ScrFI	CCNGG	2 cut(s)	109, 132
SduI	GDGCHC	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	438
SinI	GGWCC	1 cut(s)	744
SmlI	CTYRAG	3 cut(s)	54, 470, 665
SmoI	CTYRAG	3 cut(s)	54, 470, 665
Sse9I	AATT	2 cut(s)	613, 687
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	2 cut(s)	38, 171
StyD4I	CCNGG	2 cut(s)	107, 130
TaaI	ACNGT	4 cut(s)	16, 196, 372, 733
TaiI	ACGT	5 cut(s)	73, 222, 330, 639, 777
TaqI	TCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	613, 687
TatI	WGTACW	3 cut(s)	19, 246, 477
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	471, 781
Tru9I	TTAA	2 cut(s)	471, 781
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	3 cut(s)	224, 268, 547
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	3 cut(s)	224, 268, 547
TspDTI	ATGAA	2 cut(s)	441, 505
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	744
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	405
XspI	CTAG	2 cut(s)	38, 171
ZrmI	AGTACT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.