Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002766

Physical Location & Seq

Genomic Coordinates Reverse (-)

17909446 .. 17910936

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGCATTCAACAAAATCAGAGTCTGATATCACAAGCTCAGCTGGATCATCACCGTCAAGGTCCCCAAAGGCACCTGTGTACTATGTGCAGAGCCCTTCAAGGGACTCGCACGATGGGGACAAGTCCTTGTCAATGCACGCCACTCCAATCTACAACAACAGCCCCATGGAGTCACCCTCACACCCCTCCTTCGGCCGCCACTCGAGGAACTCCTCCTCGAGCAAATTCTCGGGGATTTTCAGGTCCTCTTCAGGTAGGAAAGGCGGTAGTAAGCAGAGGAATGAAAAAGGGTGGCCGGAGTGCAAGGTGATTATGGAGGACGGGGCTTATGATGATTTCAACGATAAGTCGCTTTCGCGGCGAGTGCAGGTCTTGATTGCTCTACTTAGCTTTGTGTTGTTGTTCACTGTCTTCTGCTTGATCATATGGGGCGCAAGCAGGCCTTACAAAGCAGAAGTAGTAGTTAAGAGCTTGGAAATCAGTAACTTCTACATTGGTGAGGGTTCGGACTTCAGTGGAGTTCCATCAAAGATGGTGACAGTGAATGGCTCATTAAGATTGAGTGTGCGCAACTCTGCTTCACTCTTTGGCATTCATGTTACCTCCTCACCTATCGGTCTCCTTTATTCGGAGATTGCGGTAGCAATTGGTCAGTTGAAGAAATATTATCAGCCTAGAAAGAGCCTCCGAACGATATCAGTGAACTTGCATGGTACTAAGGTCCCCTTATATGGAGCTGGATCAAGTTTGATGTACACAAAAACTGGTGCATTGGTTCCGATTCCATTGACCTTAAAGTTTGAAATCTGGTCTCGAGCGTATGTTGTAGGGAAGCTAGTGAAAACAAAGCATCGAAAGCAAATCTCATGCCATTTGATTTTGGATCCCACTGTCACCAAACCCATCAAGTTCAAAAAGAGCTCATGCACTTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 map00260 map00630 map01100 map01110 map01130 map01200

Pfam Domains

Protein Families

LEA_2

Protein Analysis

314

Amino Acids

34.44

Weight (kDa)

9.86

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24605
fragaria_vesca	FvH4_1g04500 FvH4_1g04500 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661 FvH4_6g31661
malus_domestica	MD02G1044800.v1.1 MD09G1210000.v1.1 MD15G1183300.v1.1 MD17G1192000.v1.1
prunus_persica	Prupe.3G068000_v2.0.a1 Prupe.7G232800_v2.0.a1
pyrus_communis	pycom09g12700 pycom17g19890
rosa_chinensis	RchiOBHm_Chr2g0090181 RchiOBHm_Chr2g0138731 RchiOBHm_Chr3g0466521
rosa_laevigata	RLG00000016086 RLG00000019757
rosa_multiflora	Rmu_sc0006243.1_g000003 Rmu_sc0007053.1_g000001 Rmu_sc0011117.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105980 Rroxscaffold_2G00151390
rosa_rugosa	Rorug02G0005400 Rorug02G0352600 Rorug02G0352600
rosa_samantha	Rh2AG051200 Rh2AG402100 Rh2BG049900 Rh2BG405500 Rh2CG052200 Rh2CG388300 Rh2DG051300 Rh2DG422300
rosa_wichuraiana	Rw2G004540 Rw2G032690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	361
AccB1I	GGYRCC	1 cut(s)	73
AccII	CGCG	1 cut(s)	361
AciI	CCGC	4 cut(s)	199, 267, 361, 641
AclWI	GGATC	4 cut(s)	55, 751, 881, 894
AcoI	YGGCCR	2 cut(s)	196, 296
AcsI	RAATTY	1 cut(s)	227
AcuI	CTGAAG	2 cut(s)	237, 499
AfaI	GTAC	3 cut(s)	83, 718, 758
AfiI	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
AgsI	TTSAA	6 cut(s)	12, 102, 343, 661, 806, 916
AluBI	AGCT	7 cut(s)	39, 44, 393, 474, 740, 838, 924
AluI	AGCT	7 cut(s)	39, 44, 393, 474, 740, 838, 924
Alw21I	GWGCWC	1 cut(s)	926
Alw26I	GTCTC	2 cut(s)	626, 819
AlwI	GGATC	4 cut(s)	55, 751, 881, 894
AlwNI	CAGNNNCTG	1 cut(s)	26
Ama87I	CYCGRG	4 cut(s)	205, 220, 232, 816
AoxI	GGCC	3 cut(s)	196, 296, 443
ApoI	RAATTY	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	2 cut(s)	437, 573
AspS9I	GGNCC	3 cut(s)	63, 246, 724
AsuHPI	GGTGA	7 cut(s)	45, 168, 322, 512, 550, 603, 889
AvaI	CYCGRG	4 cut(s)	205, 220, 232, 816
AvaII	GGWCC	3 cut(s)	63, 246, 724
BaeI	ACNNNNGTAYC	2 cut(s)	708, 741
BamHI	GGATCC	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	98, 926
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	926
BccI	CCATC	4 cut(s)	110, 529, 535, 914
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	2 cut(s)	626, 819
BfaI	CTAG	2 cut(s)	678, 839
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	2 cut(s)	199, 362
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	2 cut(s)	200, 363
Bme18I	GGWCC	3 cut(s)	63, 246, 724
BmeT110I	CYCGRG	4 cut(s)	205, 220, 232, 816
BmgT120I	GGNCC	3 cut(s)	63, 246, 724
BmiI	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
BmsI	GCATC	1 cut(s)	862
BpiI	GAAGAC	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
Bpu1102I	GCTNAGC	1 cut(s)	40
BsaI	GGTCTC	2 cut(s)	626, 819
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
Bse1I	ACTGG	1 cut(s)	772
BseDI	CCNNGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	772
BseRI	GAGGAG	3 cut(s)	205, 208, 598
BseX3I	CGGCCG	1 cut(s)	196
BsgI	GTGCAG	2 cut(s)	110, 389
Bsh1236I	CGCG	1 cut(s)	361
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	3 cut(s)	198, 298, 445
BshNI	GGYRCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	926
BsiHKCI	CYCGRG	4 cut(s)	205, 220, 232, 816
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	4 cut(s)	49, 119, 134, 710
BslI	CCNNNNNNNGG	4 cut(s)	103, 194, 631, 734
BsmAI	GTCTC	2 cut(s)	626, 819
BsmFI	GGGAC	4 cut(s)	49, 119, 134, 710
BsmI	GAATGC	2 cut(s)	7, 594
BsnI	GGCC	3 cut(s)	198, 298, 445
Bso31I	GGTCTC	2 cut(s)	626, 819
BsoBI	CYCGRG	4 cut(s)	205, 220, 232, 816
Bsp1286I	GDGCHC	2 cut(s)	98, 926
Bsp1407I	TGTACA	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	47, 423, 743, 886
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp19I	CCATGG	1 cut(s)	168
BspACI	CCGC	4 cut(s)	199, 267, 361, 641
BspANI	GGCC	3 cut(s)	198, 298, 445
BspCNI	CTCAG	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	4 cut(s)	55, 751, 881, 894
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	2 cut(s)	626, 819
BsrGI	TGTACA	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	4 cut(s)	47, 423, 743, 886
BssT1I	CCWWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	57, 412, 544, 895
Bst6I	CTCTTC	1 cut(s)	256
BstAUI	TGTACA	1 cut(s)	756
BstC8I	GCNNGC	3 cut(s)	141, 439, 443
BstDEI	CTNAG	3 cut(s)	40, 389, 720
BstDSI	CCRYGG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	437, 573
BstKTI	GATC	4 cut(s)	50, 426, 746, 889
BstMAI	GTCTC	2 cut(s)	626, 819
BstMBI	GATC	4 cut(s)	47, 423, 743, 886
BstMCI	CGRYCG	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	361, 367, 859
BstUI	CGCG	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BstZI	CGGCCG	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	198, 298, 445
BtgI	CCRYGG	1 cut(s)	168
BtsIMutI	CAGTG	5 cut(s)	408, 523, 549, 708, 891
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	141, 439, 443
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	2 cut(s)	437, 573
Cfr13I	GGNCC	3 cut(s)	63, 246, 724
Csp6I	GTAC	3 cut(s)	82, 717, 757
CviAII	CATG	5 cut(s)	169, 599, 713, 870, 927
CviQI	GTAC	3 cut(s)	82, 717, 757
DdeI	CTNAG	3 cut(s)	40, 389, 720
DpnI	GATC	4 cut(s)	49, 425, 745, 888
DpnII	GATC	4 cut(s)	47, 423, 743, 886
EaeI	YGGCCR	2 cut(s)	196, 296
EagI	CGGCCG	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	924
EclXI	CGGCCG	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	98, 926
Eco31I	GGTCTC	2 cut(s)	626, 819
Eco32I	GATATC	2 cut(s)	31, 699
Eco47I	GGWCC	3 cut(s)	63, 246, 724
Eco52I	CGGCCG	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	924
Eco57I	CTGAAG	2 cut(s)	237, 499
Eco88I	CYCGRG	4 cut(s)	205, 220, 232, 816
EcoICRI	GAGCTC	1 cut(s)	924
EcoO109I	RGGNCCY	3 cut(s)	63, 246, 724
EcoRV	GATATC	2 cut(s)	31, 699
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	9
EcoT38I	GRGCYC	2 cut(s)	98, 926
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	172, 602, 716, 873, 930
FalI	AAGNNNNNCTT	4 cut(s)	430, 462, 713, 745
FaqI	GGGAC	4 cut(s)	49, 119, 134, 710
FatI	CATG	5 cut(s)	168, 598, 712, 869, 926
FauNDI	CATATG	1 cut(s)	428
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	199, 362
FriOI	GRGCYC	2 cut(s)	98, 926
Fsp4HI	GCNGC	2 cut(s)	199, 362
FspBI	CTAG	2 cut(s)	678, 839
FspI	TGCGCA	1 cut(s)	572
GlaI	GCGC	2 cut(s)	436, 572
GluI	GCNGC	2 cut(s)	199, 362
HaeIII	GGCC	3 cut(s)	198, 298, 445
HapII	CCGG	1 cut(s)	299
HhaI	GCGC	2 cut(s)	437, 573
Hin1II	CATG	5 cut(s)	172, 602, 716, 873, 930
Hin6I	GCGC	2 cut(s)	435, 571
HinP1I	GCGC	2 cut(s)	435, 571
HinfI	GANTC	4 cut(s)	23, 107, 173, 784
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	7 cut(s)	45, 168, 322, 512, 550, 603, 889
Hpy166II	GTNNAC	4 cut(s)	82, 408, 706, 759
Hpy188I	TCNGA	6 cut(s)	22, 28, 511, 634, 692, 783
Hpy188III	TCNNGA	2 cut(s)	376, 816
Hpy8I	GTNNAC	4 cut(s)	82, 408, 706, 759
HpyAV	CCTTC	2 cut(s)	108, 202
HpyCH4III	ACNGT	4 cut(s)	57, 412, 544, 895
HpyCH4V	TGCA	8 cut(s)	7, 91, 139, 306, 370, 712, 773, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	361, 367, 859
HpyF3I	CTNAG	3 cut(s)	40, 389, 720
Hsp92II	CATG	5 cut(s)	172, 602, 716, 873, 930
HspAI	GCGC	2 cut(s)	435, 571
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	47, 423, 743, 886
LmnI	GCTCC	1 cut(s)	737
LweI	GCATC	1 cut(s)	862
MaeI	CTAG	2 cut(s)	678, 839
MaeIII	GTNAC	5 cut(s)	174, 485, 538, 601, 895
MalI	GATC	4 cut(s)	49, 425, 745, 888
MboI	GATC	4 cut(s)	47, 423, 743, 886
MboII	GAAGA	3 cut(s)	243, 406, 673
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	2 cut(s)	98, 926
MluCI	AATT	2 cut(s)	227, 648
MlyI	GAGTC	3 cut(s)	32, 101, 182
Mph1103I	ATGCAT	1 cut(s)	9
MseI	TTAA	3 cut(s)	468, 557, 797
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	648
Mva1269I	GAATGC	2 cut(s)	7, 594
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	361, 367, 859
NcoI	CCATGG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	428
NdeII	GATC	4 cut(s)	47, 423, 743, 886
NlaIII	CATG	5 cut(s)	172, 602, 716, 873, 930
NlaIV	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
NmuCI	GTSAC	3 cut(s)	174, 538, 895
NsbI	TGCGCA	1 cut(s)	572
NsiI	ATGCAT	1 cut(s)	9
PaeR7I	CTCGAG	3 cut(s)	205, 220, 816
PceI	AGGCCT	1 cut(s)	445
PctI	GAATGC	2 cut(s)	7, 594
PfeI	GAWTC	1 cut(s)	784
PkrI	GCNGC	2 cut(s)	200, 363
PleI	GAGTC	3 cut(s)	31, 101, 181
PpsI	GAGTC	3 cut(s)	31, 101, 181
PpuMI	RGGWCCY	3 cut(s)	63, 246, 724
Psp124BI	GAGCTC	1 cut(s)	926
Psp5II	RGGWCCY	3 cut(s)	63, 246, 724
PspN4I	GGNNCC	5 cut(s)	65, 75, 726, 780, 888
PspPI	GGNCC	3 cut(s)	63, 246, 724
PspPPI	RGGWCCY	3 cut(s)	63, 246, 724
PspXI	VCTCGAGB	2 cut(s)	205, 220
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	886
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	3 cut(s)	83, 718, 758
RsaNI	GTAC	3 cut(s)	82, 717, 757
SacI	GAGCTC	1 cut(s)	926
SaqAI	TTAA	3 cut(s)	468, 557, 797
SatI	GCNGC	2 cut(s)	199, 362
Sau3AI	GATC	4 cut(s)	47, 423, 743, 886
Sau96I	GGNCC	3 cut(s)	63, 246, 724
SchI	GAGTC	3 cut(s)	32, 101, 182
SduI	GDGCHC	2 cut(s)	98, 926
SfaNI	GCATC	1 cut(s)	862
Sfr274I	CTCGAG	3 cut(s)	205, 220, 816
SinI	GGWCC	3 cut(s)	63, 246, 724
SlaI	CTCGAG	3 cut(s)	205, 220, 816
SmlI	CTYRAG	3 cut(s)	205, 220, 816
SmoI	CTYRAG	3 cut(s)	205, 220, 816
Sse9I	AATT	2 cut(s)	227, 648
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	4 cut(s)	199, 267, 361, 641
SspI	AATATT	1 cut(s)	668
SspMI	CTAG	2 cut(s)	678, 839
SstI	GAGCTC	1 cut(s)	926
StuI	AGGCCT	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	4 cut(s)	57, 412, 544, 895
TaqI	TCGA	4 cut(s)	206, 221, 817, 856
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	2 cut(s)	227, 648
TatI	WGTACW	2 cut(s)	81, 756
TauI	GCSGC	2 cut(s)	201, 364
TfiI	GAWTC	1 cut(s)	784
Tru1I	TTAA	3 cut(s)	468, 557, 797
Tru9I	TTAA	3 cut(s)	468, 557, 797
TscAI	CASTG	5 cut(s)	415, 523, 549, 708, 898
TseFI	GTSAC	3 cut(s)	174, 538, 895
Tsp45I	GTSAC	3 cut(s)	174, 538, 895
TspDTI	ATGAA	2 cut(s)	300, 587
TspRI	CASTG	5 cut(s)	415, 523, 549, 708, 898
VpaK11BI	GGWCC	3 cut(s)	63, 246, 724
XapI	RAATTY	1 cut(s)	227
XhoI	CTCGAG	3 cut(s)	205, 220, 816
XspI	CTAG	2 cut(s)	678, 839
Zsp2I	ATGCAT	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.