Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002007

Physical Location & Seq

Genomic Coordinates Reverse (-)

19778861 .. 19779370

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACGACAATCAAAGACCCAAGTCTCGCAATTGACAAATCGGCTTGCGCTATTGACTTCTCCGACTTCCCTGAGGACGTACAACTCTGCATTGTCTCCTTCTTCCCACCTCCCGAGGTCACTAGCTTCGCCTGCACATCGAAACGGTTCGTTTCCCTCTGCAAATCCGACGGCAAGCTTTGGTTCAACATGTGCGATCTAAGGTGGGGATCTAAGACTCAGATCAAGAAATGGGGAAATGGGAAAAATCACGTACAGGAATCTCTACCAAACCCTCACCGATTGGGAGAATCTGATTTAGGTTTTGGCGCCCGGGCGACGTCGTGGGGCCTGTCGTTCGTGACTGGATTCCGAGAATCTCTGGCTAAGAACGGCATGTACGGCGTCGTAAAGGCACCGTTTTTGTGGATGAGCTTCTCGCCGGAAGGGCAAGTCGTGAACTTTCTGGACCCGGAAAGCCGGGGACGGGTGGGAAGGGTTTCTGGGTTTTGGGGATGCAGGTTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

170

Amino Acids

18.83

Weight (kDa)

8.8

Isoelectric Point (pI)

41.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	20 - 59	1.2e-07	F-box domain
F-box-like	PF12937	21 - 65	1.4e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12350 AT3G12350
fragaria_vesca	FvH4_2g32960 FvH4_2g32960 FvH4_2g32960
malus_domestica	MD08G1081200.v1.1
prunus_persica	Prupe.1G422100_v2.0.a1
pyrus_communis	pycom08g06690 pycom15g06450 pycom17g21410
rosa_chinensis	RchiOBHm_Chr6g0309741
rosa_laevigata	RLG00000010539 RLG00000015996
rosa_multiflora	Rmu_co8344261.1_g000001 Rmu_co8411317.1_g000001 Rmu_sc0006537.1_g000003 Rmu_sc0007632.1_g000012 Rmu_sc0036085.1_g000001
rosa_roxburghii	Rroxscaffold_2G00104400 Rroxscaffold_3G00269530 Rroxscaffold_7G00159220 Rroxscaffold_7G00188380
rosa_rugosa	Rorug01G0481900 Rorug02G0141800 Rorug02G0363800 Rorug05G0023200 Rorug06G0374200
rosa_samantha	Rh1AG216500 Rh1BG094300 Rh1BG406600 Rh1CG200700 Rh1DG437100 Rh2BG075700 Rh2CG077700 Rh4CG306100 Rh5AG165300 Rh5AG280900 Rh6AG487700 Rh6BG497300 Rh6CG431800 Rh6CG502000 Rh6DG488300 Rh7DG062900
rosa_wichuraiana	Rw6G042470 Rw7G005180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	489
AccB1I	GGYRCC	2 cut(s)	308, 394
AclWI	GGATC	1 cut(s)	217
AcyI	GRCGYC	3 cut(s)	309, 320, 384
AfaI	GTAC	3 cut(s)	81, 255, 380
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	3 cut(s)	126, 178, 414
AluI	AGCT	3 cut(s)	126, 178, 414
Alw26I	GTCTC	2 cut(s)	29, 100
AlwI	GGATC	1 cut(s)	217
Ama87I	CYCGRG	2 cut(s)	113, 312
AoxI	GGCC	1 cut(s)	328
Asp700I	GAANNNNTTC	2 cut(s)	146, 478
AspLEI	GCGC	2 cut(s)	50, 311
AspS9I	GGNCC	2 cut(s)	328, 448
AsuC2I	CCSGG	4 cut(s)	313, 314, 452, 461
AsuHPI	GGTGA	1 cut(s)	269
AvaI	CYCGRG	2 cut(s)	113, 312
AvaII	GGWCC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	72
BanI	GGYRCC	2 cut(s)	308, 394
BceAI	ACGGC	3 cut(s)	187, 388, 397
BcnI	CCSGG	4 cut(s)	313, 314, 452, 461
BcoDI	GTCTC	2 cut(s)	29, 100
BfaI	CTAG	2 cut(s)	123, 508
BfoI	RGCGCY	1 cut(s)	312
BfuAI	ACCTGC	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	427
Bme1390I	CCNGG	4 cut(s)	313, 314, 452, 461
Bme18I	GGWCC	1 cut(s)	448
BmeT110I	CYCGRG	2 cut(s)	113, 312
BmgT120I	GGNCC	2 cut(s)	328, 448
BmiI	GGNNCC	5 cut(s)	310, 329, 396, 450, 503
BmrFI	CCNGG	4 cut(s)	313, 314, 452, 461
BmsI	GCATC	1 cut(s)	485
BoxI	GACNNNNGTC	1 cut(s)	21
BpuMI	CCSGG	4 cut(s)	313, 314, 452, 461
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	3 cut(s)	309, 320, 384
BsaJI	CCNNGG	3 cut(s)	114, 312, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	1 cut(s)	349
Bse21I	CCTNAGG	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	114, 312, 460
BseGI	GGATG	2 cut(s)	414, 500
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMII	CTCAG	2 cut(s)	63, 233
BseNI	ACTGG	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	330
BshNI	GGYRCC	2 cut(s)	308, 394
BsiHKCI	CYCGRG	2 cut(s)	113, 312
BsiSI	CCGG	4 cut(s)	313, 422, 452, 460
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	2 cut(s)	29, 100
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	330
BsoBI	CYCGRG	2 cut(s)	113, 312
Bsp143I	GATC	3 cut(s)	196, 209, 222
BspANI	GGCC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	64, 232
BspLI	GGNNCC	5 cut(s)	310, 329, 396, 450, 503
BspMI	ACCTGC	1 cut(s)	489
BspPI	GGATC	1 cut(s)	217
BspT107I	GGYRCC	2 cut(s)	308, 394
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	114, 312, 460
BssMI	GATC	3 cut(s)	196, 209, 222
BssNI	GRCGYC	3 cut(s)	309, 320, 384
Bst4CI	ACNGT	2 cut(s)	147, 399
BstACI	GRCGYC	3 cut(s)	309, 320, 384
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	46, 133, 176
BstDEI	CTNAG	5 cut(s)	72, 200, 213, 219, 366
BstF5I	GGATG	2 cut(s)	414, 500
BstH2I	RGCGCY	1 cut(s)	312
BstHHI	GCGC	2 cut(s)	50, 311
BstKTI	GATC	3 cut(s)	199, 212, 225
BstMAI	GTCTC	2 cut(s)	29, 100
BstMBI	GATC	3 cut(s)	196, 209, 222
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 381, 427
BstNSI	RCATGY	2 cut(s)	193, 379
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSCI	CCNGG	4 cut(s)	311, 312, 450, 459
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	414, 500
BveI	ACCTGC	1 cut(s)	489
Cac8I	GCNNGC	3 cut(s)	46, 133, 176
CfoI	GCGC	2 cut(s)	50, 311
Cfr13I	GGNCC	2 cut(s)	328, 448
Cfr9I	CCCGGG	1 cut(s)	312
CseI	GACGC	1 cut(s)	373
Csp6I	GTAC	3 cut(s)	80, 254, 379
CviAII	CATG	2 cut(s)	190, 376
CviJI	RGCY	7 cut(s)	44, 126, 178, 330, 365, 414, 459
CviKI_1	RGCY	7 cut(s)	44, 126, 178, 330, 365, 414, 459
CviQI	GTAC	3 cut(s)	80, 254, 379
DdeI	CTNAG	5 cut(s)	72, 200, 213, 219, 366
DinI	GGCGCC	1 cut(s)	310
DpnI	GATC	3 cut(s)	198, 211, 224
DpnII	GATC	3 cut(s)	196, 209, 222
Eco47I	GGWCC	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	72
Eco88I	CYCGRG	2 cut(s)	113, 312
EcoO109I	RGGNCCY	1 cut(s)	328
EgeI	GGCGCC	1 cut(s)	310
EheI	GGCGCC	1 cut(s)	310
FaeI	CATG	2 cut(s)	193, 379
FaiI	YATR	2 cut(s)	191, 377
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	2 cut(s)	189, 375
FokI	GGATG	1 cut(s)	421
FspBI	CTAG	2 cut(s)	123, 508
GlaI	GCGC	2 cut(s)	49, 310
HaeII	RGCGCY	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	4 cut(s)	313, 422, 452, 460
HgaI	GACGC	1 cut(s)	373
HhaI	GCGC	2 cut(s)	50, 311
Hin1I	GRCGYC	3 cut(s)	309, 320, 384
Hin1II	CATG	2 cut(s)	193, 379
Hin6I	GCGC	2 cut(s)	48, 309
HinP1I	GCGC	2 cut(s)	48, 309
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	217, 260, 290, 348, 356
HpaII	CCGG	4 cut(s)	313, 422, 452, 460
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	5 cut(s)	64, 169, 222, 295, 353
Hpy188III	TCNNGA	5 cut(s)	113, 226, 340, 436, 446
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	4 cut(s)	173, 322, 325, 389
HpyAV	CCTTC	3 cut(s)	109, 419, 468
HpyCH4III	ACNGT	2 cut(s)	147, 399
HpyCH4IV	ACGT	3 cut(s)	78, 252, 320
HpyCH4V	TGCA	4 cut(s)	90, 135, 162, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 381, 427
HpyF3I	CTNAG	5 cut(s)	72, 200, 213, 219, 366
HpySE526I	ACGT	3 cut(s)	78, 252, 320
Hsp92I	GRCGYC	3 cut(s)	309, 320, 384
Hsp92II	CATG	2 cut(s)	193, 379
HspAI	GCGC	2 cut(s)	48, 309
KasI	GGCGCC	1 cut(s)	308
Kzo9I	GATC	3 cut(s)	196, 209, 222
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	2 cut(s)	123, 508
MaeII	ACGT	3 cut(s)	78, 252, 320
MaeIII	GTNAC	2 cut(s)	118, 340
MalI	GATC	3 cut(s)	198, 211, 224
MboI	GATC	3 cut(s)	196, 209, 222
MboII	GAAGA	1 cut(s)	94
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	1 cut(s)	209
MluCI	AATT	1 cut(s)	30
Mly113I	GGCGCC	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	2 cut(s)	87, 192
MnlI	CCTC	5 cut(s)	67, 109, 120, 167, 285
MroXI	GAANNNNTTC	2 cut(s)	146, 478
MspI	CCGG	4 cut(s)	313, 422, 452, 460
MspR9I	CCNGG	4 cut(s)	313, 314, 452, 461
MunI	CAATTG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	132, 381, 427
NarI	GGCGCC	1 cut(s)	309
NciI	CCSGG	4 cut(s)	313, 314, 452, 461
NdeII	GATC	3 cut(s)	196, 209, 222
NlaIII	CATG	2 cut(s)	193, 379
NlaIV	GGNNCC	5 cut(s)	310, 329, 396, 450, 503
NmuCI	GTSAC	2 cut(s)	118, 340
NspI	RCATGY	2 cut(s)	193, 379
PciI	ACATGT	1 cut(s)	189
PdmI	GAANNNNTTC	2 cut(s)	146, 478
PfeI	GAWTC	4 cut(s)	260, 290, 348, 356
PleI	GAGTC	1 cut(s)	211
PluTI	GGCGCC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	211
Ppu21I	YACGTR	1 cut(s)	253
PscI	ACATGT	1 cut(s)	189
PshAI	GACNNNNGTC	1 cut(s)	21
PspN4I	GGNNCC	5 cut(s)	310, 329, 396, 450, 503
PspPI	GGNCC	2 cut(s)	328, 448
PsrI	GAACNNNNNNTAC	2 cut(s)	362, 394
PsuI	RGATCY	1 cut(s)	209
RsaI	GTAC	3 cut(s)	81, 255, 380
RsaNI	GTAC	3 cut(s)	80, 254, 379
Sau3AI	GATC	3 cut(s)	196, 209, 222
Sau96I	GGNCC	2 cut(s)	328, 448
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	4 cut(s)	313, 314, 452, 461
SfaNI	GCATC	1 cut(s)	485
SfoI	GGCGCC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	448
SmaI	CCCGGG	1 cut(s)	314
SrfI	GCCCGGGC	1 cut(s)	314
Sse9I	AATT	1 cut(s)	30
SspDI	GGCGCC	1 cut(s)	308
SspMI	CTAG	2 cut(s)	123, 508
StyD4I	CCNGG	4 cut(s)	311, 312, 450, 459
TaaI	ACNGT	2 cut(s)	147, 399
TaiI	ACGT	3 cut(s)	81, 255, 323
TaqI	TCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	30
TfiI	GAWTC	4 cut(s)	260, 290, 348, 356
TseFI	GTSAC	2 cut(s)	118, 340
Tsp45I	GTSAC	2 cut(s)	118, 340
TspMI	CCCGGG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	448
XceI	RCATGY	2 cut(s)	193, 379
XmaI	CCCGGG	1 cut(s)	312
XmnI	GAANNNNTTC	2 cut(s)	146, 478
XspI	CTAG	2 cut(s)	123, 508
ZraI	GACGTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.