Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Forward (+)

22294925 .. 22295470

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCACCAACCTCCTCATGTTATTCTATTTGCGGTTTCGGCTTTGATAAATGACTACAAGGTAGTGAAACTGGTGTATCTCCGCCAAGATGATCGATCCCAAGCTTGCCCTGAAATTGGGCTTTATTCACTAAATTCAGGGTCTTGGAAAACCATCACAGCAACTGCTCCTAATTACGTCATCGCTCAGACATTTTGGTCTCAAGTTTTTGTTCATGGAGCTGTGCATTGGATTGCGTCTCGTCGAAAAGAAAATGGACTCCGCAATGTGATTTTGTCATTTGATATGAGTGATGAGACTTTTAAAGAGATTCAGTTGCCAGAAGATTTAGCTTGTGTGTTACCGACCAAGTACATGGCCATTTCAGCTGCTGGAAAGTATATTGCTGTGAAGCACTATGATCAAAACATACATAGTATTTGGATTATGAGAGAATATGGGGTGGTGGATTCATGGACAAAGAAATTCTCTATTGATACACATGTCATCCCGAATTTTCGAGTTGTACAGATTATGGGGTGCGGAAGAATGGCGAGTTTCTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

182

Amino Acids

20.66

Weight (kDa)

8.66

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	17 - 168	4.2e-18	F-box associated beta propeller domain
FBA_3	PF08268	17 - 157	3.9e-13	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	196
AciI	CCGC	4 cut(s)	32, 82, 262, 522
AclWI	GGATC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	3 cut(s)	133, 464, 493
AfaI	GTAC	2 cut(s)	353, 507
AfiI	CCNNNNNNNGG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	481
AluBI	AGCT	4 cut(s)	104, 221, 332, 368
AluI	AGCT	4 cut(s)	104, 221, 332, 368
Alw26I	GTCTC	3 cut(s)	204, 243, 290
AlwI	GGATC	1 cut(s)	90
AlwNI	CAGNNNCTG	2 cut(s)	164, 371
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	3 cut(s)	133, 464, 493
BaeI	ACNNNNGTAYC	4 cut(s)	59, 92, 468, 501
BalI	TGGCCA	1 cut(s)	359
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	204, 243, 290
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	75
Bse3DI	GCAATG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	94
BseGI	GGATG	1 cut(s)	486
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	75
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	94
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	3 cut(s)	204, 243, 290
BsmBI	CGTCTC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	359
Bso31I	GGTCTC	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	3 cut(s)	91, 95, 400
BspACI	CCGC	4 cut(s)	32, 82, 262, 522
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	1 cut(s)	199
BspDI	ATCGAT	1 cut(s)	94
BspPI	GGATC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	91, 95, 400
BstAUI	TGTACA	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	486
BstKTI	GATC	3 cut(s)	94, 98, 403
BstMAI	GTCTC	3 cut(s)	204, 243, 290
BstMBI	GATC	3 cut(s)	91, 95, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 365
BstNSI	RCATGY	1 cut(s)	485
BstV1I	GCAGC	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	359
BsuTUI	ATCGAT	1 cut(s)	94
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	486
Cac8I	GCNNGC	1 cut(s)	106
CaiI	CAGNNNCTG	2 cut(s)	164, 371
ClaI	ATCGAT	1 cut(s)	94
CseI	GACGC	1 cut(s)	225
Csp6I	GTAC	2 cut(s)	352, 506
CviAII	CATG	5 cut(s)	17, 215, 355, 453, 482
CviJI	RGCY	7 cut(s)	41, 104, 121, 221, 332, 359, 368
CviKI_1	RGCY	7 cut(s)	41, 104, 121, 221, 332, 359, 368
CviQI	GTAC	2 cut(s)	352, 506
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	3 cut(s)	93, 97, 402
DpnII	GATC	3 cut(s)	91, 95, 400
DraI	TTTAAA	1 cut(s)	304
DrdI	GACNNNNNNGTC	1 cut(s)	196
DseDI	GACNNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	243
FaeI	CATG	5 cut(s)	20, 218, 358, 456, 485
FatI	CATG	5 cut(s)	16, 214, 354, 452, 481
FbaI	TGATCA	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	1 cut(s)	473
Fsp4HI	GCNGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	359
HgaI	GACGC	1 cut(s)	225
Hin1II	CATG	5 cut(s)	20, 218, 358, 456, 485
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	3 cut(s)	258, 310, 449
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	1 cut(s)	490
Hpy99I	CGWCG	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	2 cut(s)	4, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 365
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	5 cut(s)	20, 218, 358, 456, 485
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	91, 95, 400
LmnI	GCTCC	2 cut(s)	172, 218
LpnPI	CCDG	5 cut(s)	56, 123, 123, 333, 357
Lsp1109I	GCAGC	1 cut(s)	355
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	339
MalI	GATC	3 cut(s)	93, 97, 402
MboI	GATC	3 cut(s)	91, 95, 400
MboII	GAAGA	2 cut(s)	335, 537
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	5 cut(s)	114, 133, 172, 464, 493
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	21, 24
Mox20I	TGGCCA	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	38, 365
NdeII	GATC	3 cut(s)	91, 95, 400
NlaIII	CATG	5 cut(s)	20, 218, 358, 456, 485
NspI	RCATGY	1 cut(s)	485
PciI	ACATGT	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	310, 449
PkrI	GCNGC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
PscI	ACATGT	1 cut(s)	481
PstNI	CAGNNNCTG	2 cut(s)	164, 371
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	353, 507
RsaNI	GTAC	2 cut(s)	352, 506
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	91, 95, 400
SchI	GAGTC	1 cut(s)	252
SetI	ASST	7 cut(s)	13, 63, 106, 180, 223, 334, 370
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	5 cut(s)	114, 133, 172, 464, 493
SsiI	CCGC	4 cut(s)	32, 82, 262, 522
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	94, 244, 499
TasI	AATT	5 cut(s)	114, 133, 172, 464, 493
TatI	WGTACW	2 cut(s)	351, 505
TfiI	GAWTC	2 cut(s)	310, 449
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TseI	GCWGC	1 cut(s)	368
TspDTI	ATGAA	2 cut(s)	203, 441
XapI	RAATTY	3 cut(s)	133, 464, 493
XceI	RCATGY	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.