Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006943

Physical Location & Seq

Genomic Coordinates Forward (+)

22429529 .. 22430628

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCCATTTCAGCTGCTGGAAAGTCTATTGCTGTGAAGCACTATGATCAAAACATACATAGTGTTTGGATTATGAGAGAGTATGGGGTGGTGGATTCATGGACAAAGAAATTCTCCATTGATACACATGTCATCCCGAATTTCCGAGTTGTACAGATTATGGGGTGCAGGAAGAATGGCGAGTTTCTGTTAGAAATGTATGACCATGGAAGGAAGACTGGAGAGTTGGTCTCTCATGATCCTGAGAACAACAGAAATGAATTTCTAGGAATTCATACAGATCCAGGGTATTCATGTATTGAATATTACACGGAGGGCCTAGCTTTACTCGATAGAGCGAGCGAGTTGATGCACATTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1 FBA_3

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

5.93

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006943)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g27880
malus_domestica	MD17G1227400.v1.1
prunus_persica	Prupe.3G110400_v2.0.a1 Prupe.3G110600_v2.0.a1
pyrus_communis	pycom17g24030 pycom17g24150
rosa_chinensis	RchiOBHm_Chr2g0131271 RchiOBHm_Chr2g0131321 RchiOBHm_Chr2g0131341
rosa_laevigata	RLG00000019177 RLG00000019179
rosa_multiflora	Rmu_co8362045.1_g000001 Rmu_ssc0000019.1_g000030 Rmu_ssc0000019.1_g000033 Rmu_ssc0000019.1_g000034
rosa_roxburghii	Rroxscaffold_2G00113090 Rroxscaffold_2G00113120
rosa_rugosa	Rorug02G0295800 Rorug02G0295900
rosa_samantha	Rh2AG349000 Rh2AG349100 Rh2AG349200 Rh2CG335000
rosa_wichuraiana	Rw2G028320 Rw2G028330 Rw2G028340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	233, 275
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	110, 139, 260, 270
AfaI	GTAC	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	2 cut(s)	14, 323
AluI	AGCT	2 cut(s)	14, 323
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	233, 275
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	3, 316
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	4 cut(s)	110, 139, 260, 270
AspS9I	GGNCC	1 cut(s)	316
BaeI	ACNNNNGTAYC	2 cut(s)	114, 147
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	221
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	266, 320
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	205, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bse1I	ACTGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	205, 284
BseGI	GGATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	5, 318
BsmAI	GTCTC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	5, 318
Bso31I	GGTCTC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	46, 238, 280
Bsp19I	CCATGG	1 cut(s)	205
BspANI	GGCC	2 cut(s)	5, 318
BspCNI	CTCAG	1 cut(s)	235
BspHI	TCATGA	1 cut(s)	235
BspPI	GGATC	2 cut(s)	233, 275
BspTNI	GGTCTC	1 cut(s)	235
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	223
BssECI	CCNNGG	2 cut(s)	205, 284
BssMI	GATC	3 cut(s)	46, 238, 280
BssT1I	CCWWGG	1 cut(s)	205
Bst2UI	CCWGG	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	243
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	3 cut(s)	49, 241, 283
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	46, 238, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	5, 318
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	340
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	6 cut(s)	99, 128, 206, 236, 294, 360
CviJI	RGCY	4 cut(s)	5, 14, 318, 323
CviKI_1	RGCY	4 cut(s)	5, 14, 318, 323
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	3 cut(s)	48, 240, 282
DpnII	GATC	3 cut(s)	46, 238, 280
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	205
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	6 cut(s)	102, 131, 209, 239, 297, 363
FatI	CATG	6 cut(s)	98, 127, 205, 235, 293, 359
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	2 cut(s)	266, 320
GluI	GCNGC	1 cut(s)	15
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	5, 318
Hin1II	CATG	6 cut(s)	102, 131, 209, 239, 297, 363
HinfI	GANTC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	146
Hpy188III	TCNNGA	3 cut(s)	136, 236, 242
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	168, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	6 cut(s)	102, 131, 209, 239, 297, 363
Ksp22I	TGATCA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	46, 238, 280
LpnPI	CCDG	6 cut(s)	3, 154, 204, 255, 270, 297
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	2 cut(s)	266, 320
MalI	GATC	3 cut(s)	48, 240, 282
MboI	GATC	3 cut(s)	46, 238, 280
MboII	GAAGA	2 cut(s)	184, 226
MflI	RGATCY	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	110, 139, 260, 270
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	1 cut(s)	307
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	3 cut(s)	46, 238, 280
NlaIII	CATG	6 cut(s)	102, 131, 209, 239, 297, 363
NspI	RCATGY	1 cut(s)	131
PagI	TCATGA	1 cut(s)	235
PciI	ACATGT	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	16
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	46, 238, 280
Sau96I	GGNCC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	2 cut(s)	16, 325
SfaNI	GCATC	1 cut(s)	339
Sse9I	AATT	4 cut(s)	110, 139, 260, 270
SspI	AATATT	1 cut(s)	305
SspMI	CTAG	2 cut(s)	266, 320
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	205
TaqI	TCGA	1 cut(s)	330
TasI	AATT	4 cut(s)	110, 139, 260, 270
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	4 cut(s)	87, 263, 273, 282
TspGWI	ACGGA	1 cut(s)	326
XapI	RAATTY	4 cut(s)	110, 139, 260, 270
XceI	RCATGY	1 cut(s)	131
XspI	CTAG	2 cut(s)	266, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.