pycom420g01220

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
Physical Location & Seq
Forward (+)
1708205 .. 1710210
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1086 bp
ATGTTCAAGTGCAGTGGTTTCGGCGGTATCTATGATGTTGAGCATTTTATCAAGTCATTGAGGTATGATGTAAAAATTGTAGAAAAAATACCAGAAGTTCGCAAAAATGGGAAGACCAAGAAGATAAAAGCTGTACAGCTTCGTCCCCCTCAAGATGCTCCTATCAGTTGGTATACTACAGATGCACTTGCGAAAATGAACGAGCATGGTGCTATTTATCTTACTCCCTTTTCACATCGCTTGGCAGAAGAGATTGACAACCCTGAGTATCAACGGTTGAGATGCAGAGTTAACTATCATGCACTGAGGTTTAAGTCAAATATAATGAAGTTAAGTAAATCAATCGTAGATAAGCTTCGCTCACAAGGTCACTTCATGTCCATACATCTTCGTTTTGAGATGGATATGCTGGCATTTGCTGTTACGTTCTTATCTGATTATCTTGTTATGCTCAAGTTTGCATCTGCATGGGGGTGGAGGGTCGGCCTTATTTTACGTGCAATGAGGTTTAACAATTCTACCAGGATATACCTAGCTGCTGGTGAACTATTTGGTGGGCATAGATTCATGAAACTGTTTCGCGCTTTGTTCCCTCAACTTGAGACCCACAGTTCTGTGGATCCCACAGACGAGCTAGCAGAAAACACCCAGGGATTGTTAGGGTCTGCAGTGGACTACATGGTTTGCCTCCTCTCTGATATTTTTATGCCTACATATGATGGCCCTAGCAACTTTGCCAACAATCTCCTTGGACACCGCCTCTATTATGGCTTCCGGACCACAATTAGACTGGATAGGAAAGCTCTTGCTCCAATCTTCATTGATCGAGAGAAGGGACGGACAGCTGGTTTTGAAGAAGCAGTTAGGAAAGCCATGCTCAATACTAACCTTGGTGGGCCCCACAAGCGGATCCCGCCTGAGTCTTTCTATACAAATTCTTGGCCGGAATGTTTCTGCCCAACGTCTCCTAAGAATCCAGCAGATGAATGTCCACCGGATAATGTTTTGGAAATTCTGGACAGCCAGTTGAGTGAAGTTACGGATGGCCTGGAATCAAATTCAACAATATCTGTGGCAGAAGGATGA

Protein Analysis

362

Amino Acids

41.1

Weight (kDa)

8.61

Isoelectric Point (pI)

36.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 6 - 256 7.1e-52 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 173
AccII CGCG 1 cut(s) 582
AccIII TCCGGA 1 cut(s) 774
AciI CCGC 4 cut(s) 24, 757, 907, 914
AclWI GGATC 4 cut(s) 614, 627, 904, 917
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 3 cut(s) 934, 1011, 1057
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 906
AgsI TTSAA 3 cut(s) 7, 854, 1062
AjnI CCWGG 3 cut(s) 521, 648, 1047
AluBI AGCT 7 cut(s) 131, 139, 355, 536, 634, 803, 845
AluI AGCT 7 cut(s) 131, 139, 355, 536, 634, 803, 845
Alw26I GTCTC 2 cut(s) 596, 969
AlwI GGATC 4 cut(s) 614, 627, 904, 917
Aor13HI TCCGGA 1 cut(s) 774
AoxI GGCC 5 cut(s) 484, 721, 896, 941, 1045
ApaI GGGCCC 1 cut(s) 900
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 3 cut(s) 934, 1011, 1057
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 4 cut(s) 722, 777, 896, 897
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 634
AvaII GGWCC 1 cut(s) 777
BaeGI GKGCMC 1 cut(s) 900
BamHI GGATCC 2 cut(s) 619, 909
BanII GRGCYC 1 cut(s) 900
BarI GAAGNNNNNNTAC 2 cut(s) 339, 371
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 523
BccI CCATC 3 cut(s) 394, 713, 1037
BcgI CGANNNNNNTGC 3 cut(s) 35, 191, 225
BciT130I CCWGG 3 cut(s) 523, 650, 1049
BcoDI GTCTC 2 cut(s) 596, 969
BfaI CTAG 3 cut(s) 533, 635, 726
BfmI CTRYAG 2 cut(s) 177, 666
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 3 cut(s) 523, 650, 1049
Bme18I GGWCC 1 cut(s) 777
BmgT120I GGNCC 4 cut(s) 722, 777, 896, 897
BmiI GGNNCC 4 cut(s) 621, 898, 899, 911
BmrFI CCNGG 3 cut(s) 523, 650, 1049
BmsI GCATC 4 cut(s) 145, 172, 272, 470
BmtI GCTAGC 1 cut(s) 638
BpiI GAAGAC 1 cut(s) 119
BpuEI CTTGAG 3 cut(s) 135, 437, 620
BsaAI YACGTR 1 cut(s) 497
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 648, 649, 748, 889
BsaWI WCCGGW 2 cut(s) 774, 994
Bsc4I CCNNNNNNNGG 1 cut(s) 906
Bse1I ACTGG 2 cut(s) 795, 1024
Bse3DI GCAATG 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 774
BseBI CCWGG 3 cut(s) 523, 650, 1049
BseDI CCNNGG 4 cut(s) 648, 649, 748, 889
BseGI GGATG 1 cut(s) 1048
BseLI CCNNNNNNNGG 1 cut(s) 906
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 3 cut(s) 255, 296, 909
BseNI ACTGG 2 cut(s) 795, 1024
BseRI GAGGAG 1 cut(s) 680
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 1 cut(s) 523
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 5 cut(s) 486, 723, 898, 943, 1047
BsiSI CCGG 3 cut(s) 775, 944, 995
BslFI GGGAC 2 cut(s) 129, 849
BslI CCNNNNNNNGG 1 cut(s) 906
BsmAI GTCTC 2 cut(s) 596, 969
BsmBI CGTCTC 1 cut(s) 969
BsmFI GGGAC 2 cut(s) 129, 849
BsnI GGCC 5 cut(s) 486, 723, 898, 943, 1047
Bso31I GGTCTC 1 cut(s) 596
Bsp120I GGGCCC 1 cut(s) 896
Bsp1286I GDGCHC 1 cut(s) 900
Bsp13I TCCGGA 1 cut(s) 774
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 3 cut(s) 619, 823, 909
BspACI CCGC 4 cut(s) 24, 757, 907, 914
BspANI GGCC 5 cut(s) 486, 723, 898, 943, 1047
BspCNI CTCAG 3 cut(s) 256, 297, 910
BspEI TCCGGA 1 cut(s) 774
BspFNI CGCG 1 cut(s) 582
BspHI TCATGA 1 cut(s) 567
BspLI GGNNCC 4 cut(s) 621, 898, 899, 911
BspMAI CTGCAG 1 cut(s) 670
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 4 cut(s) 614, 627, 904, 917
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 133
BsrI ACTGG 2 cut(s) 795, 1024
BssECI CCNNGG 4 cut(s) 648, 649, 748, 889
BssMI GATC 3 cut(s) 619, 823, 909
BssNAI GTATAC 1 cut(s) 174
BssT1I CCWWGG 2 cut(s) 748, 889
Bst1107I GTATAC 1 cut(s) 174
Bst2UI CCWGG 3 cut(s) 523, 650, 1049
Bst4CI ACNGT 3 cut(s) 276, 576, 611
Bst6I CTCTTC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 133
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 411, 636
BstDEI CTNAG 4 cut(s) 264, 305, 918, 969
BstF5I GGATG 1 cut(s) 1048
BstFNI CGCG 1 cut(s) 582
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 3 cut(s) 622, 826, 912
BstMAI GTCTC 2 cut(s) 596, 969
BstMBI GATC 3 cut(s) 619, 823, 909
BstMWI GCNNNNNNNGC 2 cut(s) 904, 913
BstNI CCWGG 3 cut(s) 523, 650, 1049
BstSCI CCNGG 3 cut(s) 521, 648, 1047
BstSFI CTRYAG 2 cut(s) 177, 666
BstSLI GKGCMC 1 cut(s) 900
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 1 cut(s) 523
BstV2I GAAGAC 1 cut(s) 119
BstX2I RGATCY 2 cut(s) 619, 909
BstYI RGATCY 2 cut(s) 619, 909
BstZ17I GTATAC 1 cut(s) 174
BsuRI GGCC 5 cut(s) 486, 723, 898, 943, 1047
BtgZI GCGATG 1 cut(s) 221
BtsCI GGATG 1 cut(s) 1048
BtsI GCAGTG 2 cut(s) 19, 675
BtsIMutI CAGTG 3 cut(s) 19, 302, 675
Cac8I GCNNGC 2 cut(s) 411, 636
CciI TCATGA 1 cut(s) 567
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 4 cut(s) 722, 777, 896, 897
Csp6I GTAC 1 cut(s) 134
CspCI CAANNNNNGTGG 2 cut(s) 30, 1053
CviAII CATG 7 cut(s) 206, 299, 376, 468, 568, 679, 874
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 4 cut(s) 264, 305, 918, 969
DpnI GATC 3 cut(s) 621, 825, 911
DpnII GATC 3 cut(s) 619, 823, 909
EaeI YGGCCR 1 cut(s) 941
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 748, 889
Eco24I GRGCYC 1 cut(s) 900
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 897
EcoRII CCWGG 3 cut(s) 521, 648, 1047
EcoT14I CCWWGG 2 cut(s) 748, 889
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 2 cut(s) 748, 889
Esp3I CGTCTC 1 cut(s) 969
FaeI CATG 7 cut(s) 209, 302, 379, 471, 571, 682, 877
FaqI GGGAC 2 cut(s) 129, 849
FatI CATG 7 cut(s) 205, 298, 375, 467, 567, 678, 873
FauI CCCGC 1 cut(s) 921
FauNDI CATATG 1 cut(s) 715
FblI GTMKAC 1 cut(s) 173
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 1 cut(s) 1055
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 3 cut(s) 533, 635, 726
GlaI GCGC 1 cut(s) 583
GluI GCNGC 1 cut(s) 537
HaeIII GGCC 5 cut(s) 486, 723, 898, 943, 1047
HapII CCGG 3 cut(s) 775, 944, 995
HhaI GCGC 1 cut(s) 584
Hin1II CATG 7 cut(s) 209, 302, 379, 471, 571, 682, 877
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 4 cut(s) 564, 920, 973, 1052
HpaI GTTAAC 1 cut(s) 292
HpaII CCGG 3 cut(s) 775, 944, 995
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 5 cut(s) 174, 292, 545, 673, 992
Hpy188I TCNGA 2 cut(s) 436, 697
Hpy188III TCNNGA 5 cut(s) 152, 568, 775, 827, 1016
Hpy8I GTNNAC 5 cut(s) 174, 292, 545, 673, 992
HpyAV CCTTC 2 cut(s) 826, 1073
HpyCH4III ACNGT 3 cut(s) 276, 576, 611
HpyCH4IV ACGT 3 cut(s) 425, 496, 962
HpyCH4V TGCA 8 cut(s) 12, 185, 285, 302, 461, 467, 500, 668
HpyF10VI GCNNNNNNNGC 2 cut(s) 904, 913
HpyF3I CTNAG 4 cut(s) 264, 305, 918, 969
HpySE526I ACGT 3 cut(s) 425, 496, 962
Hsp92II CATG 7 cut(s) 209, 302, 379, 471, 571, 682, 877
HspAI GCGC 1 cut(s) 582
Kpn2I TCCGGA 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 619, 823, 909
LmnI GCTCC 2 cut(s) 163, 814
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 4 cut(s) 145, 172, 272, 470
MaeI CTAG 3 cut(s) 533, 635, 726
MaeII ACGT 3 cut(s) 425, 496, 962
MaeIII GTNAC 3 cut(s) 368, 421, 1036
MalI GATC 3 cut(s) 621, 825, 911
MboI GATC 3 cut(s) 619, 823, 909
MboII GAAGA 6 cut(s) 124, 133, 260, 380, 808, 866
MflI RGATCY 2 cut(s) 619, 909
MhlI GDGCHC 1 cut(s) 900
MluCI AATT 6 cut(s) 75, 514, 783, 934, 1011, 1057
MlyI GAGTC 1 cut(s) 929
MnlI CCTC 9 cut(s) 54, 159, 300, 471, 498, 603, 698, 701, 770
MroI TCCGGA 1 cut(s) 774
MseI TTAA 4 cut(s) 291, 312, 332, 510
MslI CAYNNNNRTG 2 cut(s) 466, 472
MspA1I CMGCKG 1 cut(s) 845
MspI CCGG 3 cut(s) 775, 944, 995
MspR9I CCNGG 3 cut(s) 523, 650, 1049
MvaI CCWGG 3 cut(s) 523, 650, 1049
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 2 cut(s) 904, 913
NdeI CATATG 1 cut(s) 715
NdeII GATC 3 cut(s) 619, 823, 909
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 7 cut(s) 209, 302, 379, 471, 571, 682, 877
NlaIV GGNNCC 4 cut(s) 621, 898, 899, 911
NmuCI GTSAC 1 cut(s) 368
PagI TCATGA 1 cut(s) 567
PasI CCCWGGG 1 cut(s) 649
PfeI GAWTC 3 cut(s) 564, 973, 1052
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
Ppu21I YACGTR 1 cut(s) 497
Psp6I CCWGG 3 cut(s) 521, 648, 1047
PspGI CCWGG 3 cut(s) 521, 648, 1047
PspN4I GGNNCC 4 cut(s) 621, 898, 899, 911
PspOMI GGGCCC 1 cut(s) 896
PspPI GGNCC 4 cut(s) 722, 777, 896, 897
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 2 cut(s) 619, 909
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
RseI CAYNNNNRTG 2 cut(s) 466, 472
SaqAI TTAA 4 cut(s) 291, 312, 332, 510
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 3 cut(s) 619, 823, 909
Sau96I GGNCC 4 cut(s) 722, 777, 896, 897
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 3 cut(s) 523, 650, 1049
SduI GDGCHC 1 cut(s) 900
SfaNI GCATC 4 cut(s) 145, 172, 272, 470
SfcI CTRYAG 2 cut(s) 177, 666
SinI GGWCC 1 cut(s) 777
SmiMI CAYNNNNRTG 2 cut(s) 466, 472
SmlI CTYRAG 3 cut(s) 150, 452, 599
SmoI CTYRAG 3 cut(s) 150, 452, 599
Sse9I AATT 6 cut(s) 75, 514, 783, 934, 1011, 1057
SsiI CCGC 4 cut(s) 24, 757, 907, 914
SspMI CTAG 3 cut(s) 533, 635, 726
StyD4I CCNGG 3 cut(s) 521, 648, 1047
StyI CCWWGG 2 cut(s) 748, 889
TaaI ACNGT 3 cut(s) 276, 576, 611
TaiI ACGT 3 cut(s) 428, 499, 965
TaqI TCGA 1 cut(s) 826
TasI AATT 6 cut(s) 75, 514, 783, 934, 1011, 1057
TatI WGTACW 1 cut(s) 133
TfiI GAWTC 3 cut(s) 564, 973, 1052
Tru1I TTAA 4 cut(s) 291, 312, 332, 510
Tru9I TTAA 4 cut(s) 291, 312, 332, 510
TscAI CASTG 3 cut(s) 19, 309, 675
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 7 cut(s) 212, 341, 364, 556, 584, 808, 999
TspGWI ACGGA 2 cut(s) 853, 1055
TspRI CASTG 3 cut(s) 19, 309, 675
VpaK11BI GGWCC 1 cut(s) 777
XapI RAATTY 3 cut(s) 934, 1011, 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 173
XspI CTAG 3 cut(s) 533, 635, 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.