pycom420g01310

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_420
OG0004051
Physical Location & Seq
Reverse (-)
1842087 .. 1843003
917 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGGTGTTGTTGATGACAATGCTAAGAAGCAGCAGAGGGAACGCCTCCATCTTTGGCACAAGGAGGTGGGCCCACATCGCAGCCATGCCTCCACCGATGGGTGGAGCGATACCTCAACCTAACATTTCACCGCCTCCGTTAGTTCTGCCAGAGTCCGATAGGGACACAGAGGATAATAACAACATCGGGTTCGGGTTCCCGAGTTTCTTGTTCGGTGGATCCATGGAGCTCATGGCTGTTCCCAAGAGGAAGACTTCTCCCCACAAGAGAGGCATAAGAAATGGCCCAAAGGCTCTGAAACCTGTCCCAGTGATAGTTCGATGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

110

Amino Acids

11.9

Weight (kDa)

11.44

Isoelectric Point (pI)

82.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 213, 226
AfiI CCNNNNNNNGG 2 cut(s) 98, 101
AluBI AGCT 1 cut(s) 229
AluI AGCT 1 cut(s) 229
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 2 cut(s) 213, 226
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 2 cut(s) 69, 283
ApaI GGGCCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 30, 80
AspS9I GGNCC 3 cut(s) 69, 70, 284
AsuHPI GGTGA 1 cut(s) 120
AvaI CYCGRG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 73
BamHI GGATCC 1 cut(s) 218
BanII GRGCYC 2 cut(s) 73, 231
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 42, 92
BccI CCATC 2 cut(s) 56, 91
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 2 cut(s) 31, 81
BlsI GCNGC 2 cut(s) 32, 82
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 69, 70, 284
BmiI GGNNCC 3 cut(s) 71, 197, 220
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 311
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 101
Bse1I ACTGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 222
BseLI CCNNNNNNNGG 2 cut(s) 98, 101
BseNI ACTGG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 42, 92
BshFI GGCC 2 cut(s) 71, 285
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 199
BslFI GGGAC 2 cut(s) 176, 290
BslI CCNNNNNNNGG 2 cut(s) 98, 101
BsmFI GGGAC 2 cut(s) 176, 290
BsnI GGCC 2 cut(s) 71, 285
BsoBI CYCGRG 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 73, 231
Bsp143I GATC 1 cut(s) 218
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 71, 285
BspLI GGNNCC 3 cut(s) 71, 197, 220
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 2 cut(s) 213, 226
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 218
BssT1I CCWWGG 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 222
BstKTI GATC 1 cut(s) 221
BstMBI GATC 1 cut(s) 218
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 42, 92
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 71, 285
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 315
BveI ACCTGC 1 cut(s) 315
Cfr13I GGNCC 3 cut(s) 69, 70, 284
CviAII CATG 3 cut(s) 85, 223, 232
CviJI RGCY 6 cut(s) 71, 83, 229, 236, 285, 293
CviKI_1 RGCY 6 cut(s) 71, 83, 229, 236, 285, 293
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 220
DpnII GATC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 2 cut(s) 73, 231
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 73, 231
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 88, 226, 235
FaiI YATR 4 cut(s) 86, 224, 233, 275
FaqI GGGAC 2 cut(s) 176, 290
FatI CATG 3 cut(s) 84, 222, 231
Fnu4HI GCNGC 2 cut(s) 31, 81
FriOI GRGCYC 2 cut(s) 73, 231
Fsp4HI GCNGC 2 cut(s) 31, 81
GluI GCNGC 2 cut(s) 31, 81
HaeIII GGCC 2 cut(s) 71, 285
Hin1II CATG 3 cut(s) 88, 226, 235
HinfI GANTC 1 cut(s) 152
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 157, 297
Hpy188III TCNNGA 1 cut(s) 199
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 88, 226, 235
Kzo9I GATC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 104, 226
LpnPI CCDG 4 cut(s) 162, 310, 315, 321
Lsp1109I GCAGC 2 cut(s) 42, 92
LweI GCATC 1 cut(s) 311
MalI GATC 1 cut(s) 220
MboI GATC 1 cut(s) 218
MboII GAAGA 1 cut(s) 262
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 73, 231
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 9 cut(s) 29, 55, 57, 99, 123, 144, 163, 240, 263
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 218
NlaIII CATG 3 cut(s) 88, 226, 235
NlaIV GGNNCC 3 cut(s) 71, 197, 220
PkrI GCNGC 2 cut(s) 32, 82
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 3 cut(s) 71, 197, 220
PspOMI GGGCCC 1 cut(s) 69
PspPI GGNCC 3 cut(s) 69, 70, 284
PsuI RGATCY 1 cut(s) 218
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 2 cut(s) 31, 81
Sau3AI GATC 1 cut(s) 218
Sau96I GGNCC 3 cut(s) 69, 70, 284
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 2 cut(s) 73, 231
SetI ASST 6 cut(s) 68, 115, 121, 231, 304, 329
SfaNI GCATC 1 cut(s) 311
SsiI CCGC 1 cut(s) 131
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 1 cut(s) 222
TaqI TCGA 1 cut(s) 319
TscAI CASTG 1 cut(s) 315
TseI GCWGC 2 cut(s) 30, 80
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.