pycom5153684g00100

Blue copper protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012527_4311101_to_5153684
OG0005440
Physical Location & Seq
Forward (+)
210799 .. 211128
330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
ATGATGGCGAGCAATGCAAGAACGGACAACACTTTAAGATCGACCGTCTCTCACGGACAAGGGTTGCCAAAGAGTTTACAGAACCCAGCCGTTCAATCCCCAAGTCCAGCAAGCGGTCCCGCTCGGCAGTATGCAGGTGATGGCGACAATGATGATGGTTCTGTCCCAGATACCATTGTTCCCGCCAGTTTCGACCATCCTAAAGAGGATGACACTGCCACTGGCGATCATGATAAAGATTCATCTGGATCACTTTGTGTGAAGCACAAGCACGGGTTGCTATTTAGGGTTTTCATTTTCTTAGGGTTTCTCTACTGCTGCCTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

110

Amino Acids

11.68

Weight (kDa)

5.57

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 125
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 3 cut(s) 114, 120, 183
AclWI GGATC 1 cut(s) 256
AdeI CACNNNGTG 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 149
AvaII GGWCC 1 cut(s) 116
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BbvI GCAGC 1 cut(s) 305
BccI CCATC 3 cut(s) 134, 149, 204
BceAI ACGGC 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 52
BfuAI ACCTGC 1 cut(s) 125
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 2 cut(s) 186, 226
Bse3DI GCAATG 1 cut(s) 19
BseGI GGATG 2 cut(s) 196, 214
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 186, 226
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 45
BsiEI CGRYCG 1 cut(s) 45
BslFI GGGAC 2 cut(s) 102, 149
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 2 cut(s) 102, 149
Bsp143I GATC 3 cut(s) 38, 226, 248
BspACI CCGC 3 cut(s) 114, 120, 183
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 186, 226
BssMI GATC 3 cut(s) 38, 226, 248
Bst4CI ACNGT 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 10, 112
BstDEI CTNAG 1 cut(s) 301
BstF5I GGATG 2 cut(s) 196, 214
BstKTI GATC 3 cut(s) 41, 229, 251
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 3 cut(s) 38, 226, 248
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 14, 277
BstV1I GCAGC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 196, 214
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 2 cut(s) 213, 219
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 2 cut(s) 10, 112
CciI TCATGA 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 116
CviAII CATG 1 cut(s) 230
CviJI RGCY 1 cut(s) 89
CviKI_1 RGCY 1 cut(s) 89
DdeI CTNAG 1 cut(s) 301
DpnI GATC 3 cut(s) 40, 228, 250
DpnII GATC 3 cut(s) 38, 226, 248
DraIII CACNNNGTG 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 116
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 1 cut(s) 233
FaiI YATR 2 cut(s) 132, 231
FaqI GGGAC 2 cut(s) 102, 149
FatI CATG 1 cut(s) 229
FauI CCCGC 2 cut(s) 127, 190
Fnu4HI GCNGC 1 cut(s) 319
FokI GGATG 2 cut(s) 183, 221
Fsp4HI GCNGC 1 cut(s) 319
GluI GCNGC 1 cut(s) 319
GsaI CCCAGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 233
HinfI GANTC 1 cut(s) 239
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 77
Hpy188III TCNNGA 2 cut(s) 230, 246
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4V TGCA 2 cut(s) 17, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 277
HpyF3I CTNAG 1 cut(s) 301
Hsp92II CATG 1 cut(s) 233
Kzo9I GATC 3 cut(s) 38, 226, 248
LpnPI CCDG 8 cut(s) 99, 120, 120, 180, 199, 207, 231, 310
Lsp1109I GCAGC 1 cut(s) 305
MalI GATC 3 cut(s) 40, 228, 250
MbiI CCGCTC 1 cut(s) 122
MboI GATC 3 cut(s) 38, 226, 248
MnlI CCTC 1 cut(s) 199
MseI TTAA 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 14, 277
NdeII GATC 3 cut(s) 38, 226, 248
NlaIII CATG 1 cut(s) 233
NlaIV GGNNCC 1 cut(s) 118
NmeAIII GCCGAG 1 cut(s) 103
PagI TCATGA 1 cut(s) 229
PaqCI CACCTGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 320
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 3 cut(s) 38, 226, 248
Sau96I GGNCC 1 cut(s) 116
SetI ASST 1 cut(s) 139
SinI GGWCC 1 cut(s) 116
SsiI CCGC 3 cut(s) 114, 120, 183
TaaI ACNGT 1 cut(s) 46
TaqI TCGA 2 cut(s) 41, 192
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 2 cut(s) 220, 226
TseI GCWGC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 231, 283
TspGWI ACGGA 2 cut(s) 38, 69
TspRI CASTG 2 cut(s) 220, 226
VpaK11BI GGWCC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.