RchiOBHm_Chr7g0185271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005905
Physical Location & Seq
Reverse (-)
5439970 .. 5443612
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGGCTTCGAGAGTCGTTGATCAACAACAAGCCAGAGAAGTGTCAGACAAAGTGGCCAGCAAGGGAATTTCAATAGAAGACAAGGAGATACTCGAGAAGAAGATGCATGGCATGGCTGTAGTGATTGAGAAATTGGAAAGCAGTAGACAAAAGCTTTTAATGGAGATTGATTCCCAATCTTTGGAGATAGAAAGGCTATTTGAGGAAAACTCTAATTTATCTAGTTCTCTTCAGGAGGCTATGAGTATAGCTTTGCACTCAGAGAATCTGGTGAAAGACTATCTTAAGCAAAATGAAGTGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAGGGGGTTGCTCGACTCTCATCATAATGGCTCTAACAAGACTGGTTTAGCGGAATATACACCTAAAGTTCTCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGTTGTATATGGAGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.91

Weight (kDa)

5.63

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 1 cut(s) 145
AciI CCGC 1 cut(s) 389
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 181, 340
AflII CTTAAG 1 cut(s) 284
AgsI TTSAA 1 cut(s) 72
AjnI CCWGG 2 cut(s) 333, 338
AluBI AGCT 3 cut(s) 154, 251, 464
AluI AGCT 3 cut(s) 154, 251, 464
Alw21I GWGCWC 1 cut(s) 303
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 2 cut(s) 54, 336
ApoI RAATTY 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 92
BalI TGGCCA 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 303
BciT130I CCWGG 2 cut(s) 335, 340
BclI TGATCA 1 cut(s) 19
BfaI CTAG 1 cut(s) 222
BfmI CTRYAG 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 335, 340
BmeT110I CYCGRG 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 335, 340
BmsI GCATC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 84
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BsaJI CCNNGG 2 cut(s) 304, 339
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 340
Bse1I ACTGG 1 cut(s) 385
BseBI CCWGG 2 cut(s) 335, 340
BseDI CCNNGG 2 cut(s) 304, 339
BseLI CCNNNNNNNGG 2 cut(s) 181, 340
BseMII CTCAG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 385
BshFI GGCC 2 cut(s) 56, 338
BsiHKAI GWGCWC 1 cut(s) 303
BsiHKCI CYCGRG 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 181, 340
BsnI GGCC 2 cut(s) 56, 338
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 2 cut(s) 19, 421
BspACI CCGC 1 cut(s) 389
BspANI GGCC 2 cut(s) 56, 338
BspCNI CTCAG 1 cut(s) 272
BspPI GGATC 1 cut(s) 429
BspTI CTTAAG 1 cut(s) 284
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 304, 339
BssMI GATC 2 cut(s) 19, 421
Bst2UI CCWGG 2 cut(s) 335, 340
Bst6I CTCTTC 1 cut(s) 234
BstAFI CTTAAG 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 2 cut(s) 259, 313
BstKTI GATC 2 cut(s) 22, 424
BstMBI GATC 2 cut(s) 19, 421
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 2 cut(s) 335, 340
BstSCI CCNGG 2 cut(s) 333, 338
BstSFI CTRYAG 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 2 cut(s) 56, 338
Cac8I GCNNGC 1 cut(s) 58
CviAII CATG 2 cut(s) 107, 112
DdeI CTNAG 2 cut(s) 259, 313
DpnI GATC 2 cut(s) 21, 423
DpnII GATC 2 cut(s) 19, 421
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 333, 338
EcoT22I ATGCAT 1 cut(s) 108
FaeI CATG 2 cut(s) 110, 115
FaiI YATR 8 cut(s) 108, 113, 242, 248, 363, 396, 472, 474
FalI AAGNNNNNCTT 2 cut(s) 267, 299
FatI CATG 2 cut(s) 106, 111
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 1 cut(s) 145
FspBI CTAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 56, 338
Hin1II CATG 2 cut(s) 110, 115
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 5 cut(s) 12, 170, 265, 309, 353
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 1 cut(s) 146
Hpy188I TCNGA 3 cut(s) 46, 262, 305
Hpy188III TCNNGA 3 cut(s) 9, 94, 233
Hpy8I GTNNAC 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 106, 256, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 2 cut(s) 259, 313
Hsp92II CATG 2 cut(s) 110, 115
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 2 cut(s) 19, 421
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 9 cut(s) 46, 70, 218, 254, 320, 325, 347, 352, 366
LweI GCATC 1 cut(s) 93
MaeI CTAG 1 cut(s) 222
MalI GATC 2 cut(s) 21, 423
MboI GATC 2 cut(s) 19, 421
MboII GAAGA 4 cut(s) 89, 109, 112, 221
MhlI GDGCHC 1 cut(s) 303
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 3 cut(s) 66, 131, 214
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 2 cut(s) 21, 347
MnlI CCTC 5 cut(s) 196, 229, 299, 445, 470
Mox20I TGGCCA 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 108
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 158, 285, 323
MslI CAYNNNNRTG 1 cut(s) 363
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 464
MspCI CTTAAG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 335, 340
MvaI CCWGG 2 cut(s) 335, 340
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 2 cut(s) 19, 421
NlaIII CATG 2 cut(s) 110, 115
NsiI ATGCAT 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 92
PfeI GAWTC 3 cut(s) 170, 265, 309
PflMI CCANNNNNTGG 1 cut(s) 181
PleI GAGTC 2 cut(s) 20, 347
PpsI GAGTC 2 cut(s) 20, 347
Psp6I CCWGG 2 cut(s) 333, 338
PspGI CCWGG 2 cut(s) 333, 338
PvuII CAGCTG 1 cut(s) 464
RseI CAYNNNNRTG 1 cut(s) 363
SaqAI TTAA 3 cut(s) 158, 285, 323
Sau3AI GATC 2 cut(s) 19, 421
SchI GAGTC 2 cut(s) 21, 347
ScrFI CCNGG 2 cut(s) 335, 340
SduI GDGCHC 1 cut(s) 303
SetI ASST 4 cut(s) 156, 253, 403, 466
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 117
Sfr274I CTCGAG 1 cut(s) 92
SlaI CTCGAG 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 363
SmlI CTYRAG 2 cut(s) 92, 284
SmoI CTYRAG 2 cut(s) 92, 284
Sse9I AATT 3 cut(s) 66, 131, 214
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 333, 338
TaqI TCGA 3 cut(s) 8, 93, 351
TasI AATT 3 cut(s) 66, 131, 214
TfiI GAWTC 3 cut(s) 170, 265, 309
Tru1I TTAA 3 cut(s) 158, 285, 323
Tru9I TTAA 3 cut(s) 158, 285, 323
TspDTI ATGAA 1 cut(s) 309
Van91I CCANNNNNTGG 1 cut(s) 181
Vha464I CTTAAG 1 cut(s) 284
XapI RAATTY 1 cut(s) 66
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.