Rroxscaffold_1G00051070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005905
Physical Location & Seq
Reverse (-)
71554041 .. 71559320
5280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051070.1

Sequence Viewer

Length: 297 bp
ATGATAAATGCAGAGTCTTCTGTTCCGGGAGTAGAAATCAGTTTTATATACATGCTCGTCTATTTTGTTTTGCTTATTGCCCCTAATGTAAACTTGCAAGTGAAAGACTGTCTTAAGCAAAATGAAGAGCGCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCGACTCCCATAGCAATGGCTCTAACAAGACTGGTTTAGCTGAATATACACCTGAAGTTCTCTCTATCAAGGATCAACTTGCAAAAAGAACAGAGCAAAGCAGAGGCATTATCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.92

Weight (kDa)

6.56

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 169
AflII CTTAAG 1 cut(s) 113
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 2 cut(s) 218, 294
AluI AGCT 2 cut(s) 218, 294
AlwI GGATC 1 cut(s) 258
AoxI GGCC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 132
AsuC2I CCSGG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 164
BcnI CCSGG 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 133
BfrI CTTAAG 1 cut(s) 113
Bme1390I CCNGG 2 cut(s) 27, 164
BmrFI CCNGG 2 cut(s) 27, 164
BpiI GAAGAC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 133, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 133, 168
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 214
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 169
BsnI GGCC 1 cut(s) 167
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 1 cut(s) 167
BspPI GGATC 1 cut(s) 258
BspQI GCTCTTC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 2 cut(s) 133, 168
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 25, 162
BstV2I GAAGAC 1 cut(s) 9
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 167
CfoI GCGC 1 cut(s) 132
CviAII CATG 1 cut(s) 52
CviJI RGCY 4 cut(s) 167, 198, 218, 294
CviKI_1 RGCY 4 cut(s) 167, 198, 218, 294
DdeI CTNAG 1 cut(s) 142
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 55
FaiI YATR 5 cut(s) 47, 49, 53, 189, 225
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 1 cut(s) 51
GlaI GCGC 1 cut(s) 131
HaeII RGCGCY 1 cut(s) 133
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HinfI GANTC 3 cut(s) 14, 138, 182
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 11, 97, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 250
LguI GCTCTTC 1 cut(s) 120
LpnPI CCDG 5 cut(s) 39, 149, 176, 195, 243
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 9, 137
MlyI GAGTC 2 cut(s) 23, 176
MnlI CCTC 2 cut(s) 128, 275
MseI TTAA 2 cut(s) 114, 152
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 294
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 27, 164
MvaI CCWGG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 27
NdeII GATC 1 cut(s) 250
NlaIII CATG 1 cut(s) 55
NmeAIII GCCGAG 1 cut(s) 158
NspI RCATGY 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 120
PfeI GAWTC 1 cut(s) 138
PfoI TCCNGGA 1 cut(s) 25
PleI GAGTC 2 cut(s) 22, 176
PpsI GAGTC 2 cut(s) 22, 176
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 114, 152
Sau3AI GATC 1 cut(s) 250
SchI GAGTC 2 cut(s) 23, 176
ScrFI CCNGG 2 cut(s) 27, 164
SetI ASST 3 cut(s) 220, 232, 296
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
StyD4I CCNGG 2 cut(s) 25, 162
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 180
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 2 cut(s) 114, 152
Tru9I TTAA 2 cut(s) 114, 152
TspDTI ATGAA 1 cut(s) 138
Vha464I CTTAAG 1 cut(s) 113
XceI RCATGY 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.