Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000605.1

Orthogroup ID

OG0005905

Physical Location & Seq

Genomic Coordinates Reverse (-)

111431 .. 115270

Gene Structure 3840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000605.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgagcatagctttgcactgggagaatcaggtgaaagactgtcttaagcaaaatgaagagctcggaggaatcttagataagttaagaactgaccaggccaaggggttgctcgactcccatagcaatggttcgaacaagactggtttagctgaatatacacctgaagttctctctatcaagtcccgtgacctgacttcttcttcaagcgctgtggacgaggagagcaccaacctcgtcacaaggttcttttcttgccttcaggagaaggacttctttgccttacgcggagcaatcactgggaagtttgagaggaacacggatttgctaaagcgtgactctagcttcgctggaagtaacaatggcggttgtgctcgcagtcggctcctggggagactgggactggaagatcaacttgcaaaagaacagagcaaagcagaggcattatcagctgaggtattacagctctcagcaagactccaacaaaccactcaagcatacaatggtcttgcacgcctctataaaccggtgttgcgaaacatagaaagcagtctcattaagatgaaacaagatggccctgatcgacagtgcggcgagaacaatcaggccctgccgaagccgctcgatctcggcggagatagagttggagagccaggacaagctaatcgatggtggagaaagcgttttgagacagccgaggaaatagaggagagtgagagggagcgcgcggagagagaaatcggaatgagagagagagatgagagagtggcagtggctgtagtttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

261

Amino Acids

29.22

Weight (kDa)

5.71

Isoelectric Point (pI)

50.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005905)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06640 FvH4_3g06680
pyrus_communis	pycom03g06710
rosa_chinensis	RchiOBHm_Chr7g0185271
rosa_laevigata	RLG00000030277
rosa_multiflora	Rmu_sc0000605.1_g000028
rosa_roxburghii	Rroxscaffold_1G00051070 Rroxscaffold_3G00258470
rosa_rugosa	Rorug04G0137600
rosa_samantha	Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600
rosa_wichuraiana	Rw3G028160 Rw5G040880 Rw7G006040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	619
AccII	CGCG	3 cut(s)	285, 723, 725
AciI	CCGC	6 cut(s)	285, 363, 588, 617, 630, 725
AcuI	CTGAAG	2 cut(s)	183, 242
AfeI	AGCGCT	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflII	CTTAAG	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	523
AgsI	TTSAA	1 cut(s)	204
AjnI	CCWGG	3 cut(s)	93, 384, 649
AluBI	AGCT	7 cut(s)	11, 61, 149, 342, 449, 463, 659
AluI	AGCT	7 cut(s)	11, 61, 149, 342, 449, 463, 659
Alw21I	GWGCWC	3 cut(s)	63, 227, 373
Alw26I	GTCTC	3 cut(s)	385, 554, 680
AlwNI	CAGNNNCTG	2 cut(s)	607, 773
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	3 cut(s)	96, 571, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	326, 358
AsiGI	ACCGGT	1 cut(s)	523
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	209, 723, 725
AspS9I	GGNCC	2 cut(s)	572, 604
AsuHPI	GGTGA	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	3 cut(s)	63, 227, 373
BbvCI	CCTCAGC	1 cut(s)	450
BccI	CCATC	2 cut(s)	563, 660
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	3 cut(s)	95, 386, 651
BcoDI	GTCTC	3 cut(s)	385, 554, 680
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	774
BfoI	RGCGCY	1 cut(s)	210
BfrI	CTTAAG	1 cut(s)	44
BisI	GCNGC	2 cut(s)	589, 617
BlsI	GCNGC	2 cut(s)	590, 618
Bme1390I	CCNGG	3 cut(s)	95, 386, 651
BmgT120I	GGNCC	2 cut(s)	572, 604
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	3 cut(s)	95, 386, 651
BmrI	ACTGGG	3 cut(s)	28, 306, 404
BmuI	ACTGGG	3 cut(s)	28, 306, 404
Bpu10I	CCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	664
BsaJI	CCNNGG	3 cut(s)	99, 385, 693
BsaWI	WCCGGW	1 cut(s)	523
BsaXI	ACNNNNNCTCC	4 cut(s)	624, 654, 664, 694
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	5 cut(s)	23, 145, 301, 399, 405
Bse3DI	GCAATG	1 cut(s)	130
BseBI	CCWGG	3 cut(s)	95, 386, 651
BseCI	ATCGAT	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	99, 385, 693
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	130
BseMII	CTCAG	2 cut(s)	441, 480
BseNI	ACTGG	5 cut(s)	23, 145, 301, 399, 405
BsePI	GCGCGC	1 cut(s)	721
BseRI	GAGGAG	2 cut(s)	233, 719
Bsh1236I	CGCG	3 cut(s)	285, 723, 725
BshFI	GGCC	3 cut(s)	98, 573, 605
BshTI	ACCGGT	1 cut(s)	523
BshVI	ATCGAT	1 cut(s)	664
BsiHKAI	GWGCWC	3 cut(s)	63, 227, 373
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	2 cut(s)	166, 411
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	385, 554, 680
BsmFI	GGGAC	2 cut(s)	166, 411
BsnI	GGCC	3 cut(s)	98, 573, 605
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	3 cut(s)	63, 227, 373
Bsp143I	GATC	3 cut(s)	406, 577, 622
BspACI	CCGC	6 cut(s)	285, 363, 588, 617, 630, 725
BspANI	GGCC	3 cut(s)	98, 573, 605
BspCNI	CTCAG	2 cut(s)	442, 479
BspDI	ATCGAT	1 cut(s)	664
BspFNI	CGCG	3 cut(s)	285, 723, 725
BspLI	GGNNCC	1 cut(s)	383
BspQI	GCTCTTC	1 cut(s)	51
BspT104I	TTCGAA	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	130
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	5 cut(s)	23, 145, 301, 399, 405
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	3 cut(s)	99, 385, 693
BssHII	GCGCGC	1 cut(s)	721
BssMI	GATC	3 cut(s)	406, 577, 622
BssT1I	CCWWGG	1 cut(s)	99
Bst2UI	CCWGG	3 cut(s)	95, 386, 651
Bst4CI	ACNGT	2 cut(s)	41, 585
Bst6I	CTCTTC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	3 cut(s)	373, 511, 723
BstDEI	CTNAG	3 cut(s)	73, 450, 466
BstFNI	CGCG	3 cut(s)	285, 723, 725
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	3 cut(s)	209, 723, 725
BstKTI	GATC	3 cut(s)	409, 580, 625
BstMAI	GTCTC	3 cut(s)	385, 554, 680
BstMBI	GATC	3 cut(s)	406, 577, 622
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 616
BstNI	CCWGG	3 cut(s)	95, 386, 651
BstSCI	CCNGG	3 cut(s)	93, 384, 649
BstSFI	CTRYAG	1 cut(s)	774
BstUI	CGCG	3 cut(s)	285, 723, 725
BstXI	CCANNNNNNTGG	1 cut(s)	125
Bsu15I	ATCGAT	1 cut(s)	664
BsuRI	GGCC	3 cut(s)	98, 573, 605
BsuTUI	ATCGAT	1 cut(s)	664
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	4 cut(s)	16, 294, 590, 774
Cac8I	GCNNGC	3 cut(s)	373, 511, 723
CaiI	CAGNNNCTG	2 cut(s)	607, 773
CfoI	GCGC	3 cut(s)	209, 723, 725
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	2 cut(s)	572, 604
ClaI	ATCGAT	1 cut(s)	664
CspAI	ACCGGT	1 cut(s)	523
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
DdeI	CTNAG	3 cut(s)	73, 450, 466
DpnI	GATC	3 cut(s)	408, 579, 624
DpnII	GATC	3 cut(s)	406, 577, 622
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	63
Eco47III	AGCGCT	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	183, 242
EcoICRI	GAGCTC	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	3 cut(s)	93, 384, 649
EcoT14I	CCWWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	99
FaiI	YATR	6 cut(s)	8, 120, 156, 496, 519, 539
FalI	AAGNNNNNCTT	6 cut(s)	27, 59, 257, 289, 396, 428
FaqI	GGGAC	2 cut(s)	166, 411
Fnu4HI	GCNGC	2 cut(s)	589, 617
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	589, 617
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	3 cut(s)	208, 722, 724
GluI	GCNGC	2 cut(s)	589, 617
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	98, 573, 605
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	3 cut(s)	209, 723, 725
Hin6I	GCGC	3 cut(s)	207, 721, 723
HinP1I	GCGC	3 cut(s)	207, 721, 723
HinfI	GANTC	5 cut(s)	25, 69, 113, 335, 474
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	65, 740
Hpy188III	TCNNGA	1 cut(s)	260
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	259, 266
HpyCH4III	ACNGT	2 cut(s)	41, 585
HpyCH4V	TGCA	3 cut(s)	16, 416, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 616
HpyF3I	CTNAG	3 cut(s)	73, 450, 466
HspAI	GCGC	3 cut(s)	207, 721, 723
Kzo9I	GATC	3 cut(s)	406, 577, 622
LguI	GCTCTTC	1 cut(s)	51
LmnI	GCTCC	3 cut(s)	287, 387, 718
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	4 cut(s)	185, 235, 332, 353
MalI	GATC	3 cut(s)	408, 579, 624
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	3 cut(s)	406, 577, 622
MboII	GAAGA	4 cut(s)	68, 189, 192, 416
MhlI	GDGCHC	3 cut(s)	63, 227, 373
MlyI	GAGTC	3 cut(s)	107, 329, 468
MmeI	TCCRAC	2 cut(s)	502, 622
MroXI	GAANNNNTTC	1 cut(s)	269
MseI	TTAA	4 cut(s)	45, 83, 555, 784
MslI	CAYNNNNRTG	2 cut(s)	123, 557
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	44
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	3 cut(s)	95, 386, 651
MvaI	CCWGG	3 cut(s)	95, 386, 651
MvnI	CGCG	3 cut(s)	285, 723, 725
MwoI	GCNNNNNNNGC	2 cut(s)	446, 616
NdeII	GATC	3 cut(s)	406, 577, 622
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	2 cut(s)	606, 718
NmuCI	GTSAC	3 cut(s)	185, 235, 332
NspV	TTCGAA	1 cut(s)	131
PauI	GCGCGC	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	25, 69
PinAI	ACCGGT	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	590, 618
PleI	GAGTC	3 cut(s)	107, 329, 468
PpsI	GAGTC	3 cut(s)	107, 329, 468
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	3 cut(s)	93, 384, 649
PspGI	CCWGG	3 cut(s)	93, 384, 649
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	2 cut(s)	572, 604
PstNI	CAGNNNCTG	2 cut(s)	607, 773
PteI	GCGCGC	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	449
RseI	CAYNNNNRTG	2 cut(s)	123, 557
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	51
SaqAI	TTAA	4 cut(s)	45, 83, 555, 784
SatI	GCNGC	2 cut(s)	589, 617
Sau3AI	GATC	3 cut(s)	406, 577, 622
Sau96I	GGNCC	2 cut(s)	572, 604
SchI	GAGTC	3 cut(s)	107, 329, 468
ScrFI	CCNGG	3 cut(s)	95, 386, 651
SduI	GDGCHC	3 cut(s)	63, 227, 373
SfcI	CTRYAG	1 cut(s)	774
SfuI	TTCGAA	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	123, 557
SmlI	CTYRAG	2 cut(s)	44, 489
SmoI	CTYRAG	2 cut(s)	44, 489
SsiI	CCGC	6 cut(s)	285, 363, 588, 617, 630, 725
SspMI	CTAG	1 cut(s)	339
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	93, 384, 649
StyI	CCWWGG	1 cut(s)	99
TaaI	ACNGT	2 cut(s)	41, 585
TaqI	TCGA	5 cut(s)	111, 131, 580, 621, 664
TauI	GCSGC	2 cut(s)	591, 619
TfiI	GAWTC	2 cut(s)	25, 69
Tru1I	TTAA	4 cut(s)	45, 83, 555, 784
Tru9I	TTAA	4 cut(s)	45, 83, 555, 784
TscAI	CASTG	4 cut(s)	23, 301, 590, 774
TseFI	GTSAC	3 cut(s)	185, 235, 332
Tsp45I	GTSAC	3 cut(s)	185, 235, 332
TspDTI	ATGAA	2 cut(s)	69, 575
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	4 cut(s)	23, 301, 590, 774
Vha464I	CTTAAG	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.