No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g06640 FvH4_3g06680 |
| pyrus_communis | pycom03g06710 |
| rosa_chinensis | RchiOBHm_Chr7g0185271 |
| rosa_laevigata | RLG00000030277 |
| rosa_multiflora | Rmu_sc0000605.1_g000028 |
| rosa_roxburghii | Rroxscaffold_1G00051070 Rroxscaffold_3G00258470 |
| rosa_rugosa | Rorug04G0137600 |
| rosa_samantha | Rh2AG225600 Rh2DG233000 Rh3AG021000 Rh3BG021700 Rh3CG020400 Rh3CG354000 Rh3DG021500 Rh3DG357300 Rh4BG176500 Rh5AG269200 Rh5CG324900 Rh5CG409200 Rh5CG475200 Rh6DG366200 Rh7AG075400 Rh7DG072600 |
| rosa_wichuraiana | Rw3G028160 Rw5G040880 Rw7G006040 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 6 |
| AcuI | CTGAAG | 1 cut(s) | 201 |
| AfeI | AGCGCT | 1 cut(s) | 78 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 118 |
| AflII | CTTAAG | 1 cut(s) | 62 |
| AjnI | CCWGG | 1 cut(s) | 111 |
| AluBI | AGCT | 2 cut(s) | 29, 167 |
| AluI | AGCT | 2 cut(s) | 29, 167 |
| Aor51HI | AGCGCT | 1 cut(s) | 78 |
| AoxI | GGCC | 2 cut(s) | 6, 114 |
| AspLEI | GCGC | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 1 cut(s) | 61 |
| BalI | TGGCCA | 1 cut(s) | 8 |
| BccI | CCATC | 1 cut(s) | 144 |
| BciT130I | CCWGG | 1 cut(s) | 113 |
| BfoI | RGCGCY | 1 cut(s) | 80 |
| BfrI | CTTAAG | 1 cut(s) | 62 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 14 |
| Bme1390I | CCNGG | 1 cut(s) | 113 |
| BmrFI | CCNGG | 1 cut(s) | 113 |
| BmrI | ACTGGG | 1 cut(s) | 46 |
| BmuI | ACTGGG | 1 cut(s) | 46 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaJI | CCNNGG | 3 cut(s) | 9, 82, 117 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 118 |
| Bse1I | ACTGG | 2 cut(s) | 41, 163 |
| BseBI | CCWGG | 1 cut(s) | 113 |
| BseDI | CCNNGG | 3 cut(s) | 9, 82, 117 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BseNI | ACTGG | 2 cut(s) | 41, 163 |
| BsgI | GTGCAG | 1 cut(s) | 17 |
| BshFI | GGCC | 2 cut(s) | 8, 116 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 118 |
| BsnI | GGCC | 2 cut(s) | 8, 116 |
| BspANI | GGCC | 2 cut(s) | 8, 116 |
| BspTI | CTTAAG | 1 cut(s) | 62 |
| BsrI | ACTGG | 2 cut(s) | 41, 163 |
| BssECI | CCNNGG | 3 cut(s) | 9, 82, 117 |
| BssT1I | CCWWGG | 2 cut(s) | 82, 117 |
| Bst2UI | CCWGG | 1 cut(s) | 113 |
| BstAFI | CTTAAG | 1 cut(s) | 62 |
| BstDEI | CTNAG | 1 cut(s) | 91 |
| BstDSI | CCRYGG | 1 cut(s) | 9 |
| BstH2I | RGCGCY | 1 cut(s) | 80 |
| BstHHI | GCGC | 1 cut(s) | 79 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstNI | CCWGG | 1 cut(s) | 113 |
| BstSCI | CCNGG | 1 cut(s) | 111 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 143 |
| BsuRI | GGCC | 2 cut(s) | 8, 116 |
| BtgI | CCRYGG | 1 cut(s) | 9 |
| BtsIMutI | CAGTG | 1 cut(s) | 34 |
| CfoI | GCGC | 1 cut(s) | 79 |
| CviJI | RGCY | 6 cut(s) | 8, 17, 29, 116, 147, 167 |
| CviKI_1 | RGCY | 6 cut(s) | 8, 17, 29, 116, 147, 167 |
| DdeI | CTNAG | 1 cut(s) | 91 |
| EaeI | YGGCCR | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 2 cut(s) | 82, 117 |
| Eco47III | AGCGCT | 1 cut(s) | 78 |
| Eco57I | CTGAAG | 1 cut(s) | 201 |
| EcoRII | CCWGG | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 2 cut(s) | 82, 117 |
| ErhI | CCWWGG | 2 cut(s) | 82, 117 |
| FaiI | YATR | 4 cut(s) | 20, 26, 141, 174 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 45, 77 |
| GlaI | GCGC | 1 cut(s) | 78 |
| HaeII | RGCGCY | 1 cut(s) | 80 |
| HaeIII | GGCC | 2 cut(s) | 8, 116 |
| HhaI | GCGC | 1 cut(s) | 79 |
| Hin6I | GCGC | 1 cut(s) | 77 |
| HinP1I | GCGC | 1 cut(s) | 77 |
| HinfI | GANTC | 3 cut(s) | 43, 87, 131 |
| HphI | GGTGA | 1 cut(s) | 61 |
| Hpy188III | TCNNGA | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 1 cut(s) | 34 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 1 cut(s) | 91 |
| HspAI | GCGC | 1 cut(s) | 77 |
| LmnI | GCTCC | 1 cut(s) | 84 |
| LpnPI | CCDG | 6 cut(s) | 22, 32, 98, 125, 144, 192 |
| MlsI | TGGCCA | 1 cut(s) | 8 |
| MluNI | TGGCCA | 1 cut(s) | 8 |
| MlyI | GAGTC | 1 cut(s) | 125 |
| MnlI | CCTC | 2 cut(s) | 7, 192 |
| Mox20I | TGGCCA | 1 cut(s) | 8 |
| MscI | TGGCCA | 1 cut(s) | 8 |
| MseI | TTAA | 2 cut(s) | 63, 101 |
| MslI | CAYNNNNRTG | 1 cut(s) | 141 |
| Msp20I | TGGCCA | 1 cut(s) | 8 |
| MspCI | CTTAAG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 113 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| PfeI | GAWTC | 2 cut(s) | 43, 87 |
| PleI | GAGTC | 1 cut(s) | 125 |
| PpsI | GAGTC | 1 cut(s) | 125 |
| Psp6I | CCWGG | 1 cut(s) | 111 |
| PspGI | CCWGG | 1 cut(s) | 111 |
| RseI | CAYNNNNRTG | 1 cut(s) | 141 |
| SaqAI | TTAA | 2 cut(s) | 63, 101 |
| SchI | GAGTC | 1 cut(s) | 125 |
| ScrFI | CCNGG | 1 cut(s) | 113 |
| SetI | ASST | 5 cut(s) | 31, 51, 169, 181, 203 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 141 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| StyD4I | CCNGG | 1 cut(s) | 111 |
| StyI | CCWWGG | 2 cut(s) | 82, 117 |
| TaqI | TCGA | 1 cut(s) | 129 |
| TfiI | GAWTC | 2 cut(s) | 43, 87 |
| Tru1I | TTAA | 2 cut(s) | 63, 101 |
| Tru9I | TTAA | 2 cut(s) | 63, 101 |
| TscAI | CASTG | 1 cut(s) | 41 |
| TspDTI | ATGAA | 1 cut(s) | 87 |
| TspGWI | ACGGA | 1 cut(s) | 26 |
| TspRI | CASTG | 1 cut(s) | 41 |
| Vha464I | CTTAAG | 1 cut(s) | 62 |